Cebpg (CCAAT/enhancer binding protein gamma) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cebpg (CCAAT/enhancer binding protein gamma) Rattus norvegicus
Analyze
Symbol: Cebpg
Name: CCAAT/enhancer binding protein gamma
RGD ID: 2330
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity, bending. Involved in liver development and regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of RNA polymerase II transcription regulator complex. Orthologous to human CEBPG (CCAAT enhancer binding protein gamma); PARTICIPATES IN tuberculosis pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C/EBP; c/EBP gamma; CCAAT/enhancer binding protein (C/EBP) gamma; CCAAT/enhancer binding protein (C/EBP), gamma; CCAAT/enhancer binding protein ,gamma; CCAAT/enhancer-binding protein gamma; CEBPRNA; homolog to a human CCAAT/enhancer binding protein - gamma; rat homolog to a human CCAAT/enhancer binding protein - gamma
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,820,981 - 96,829,736 (-)NCBIGRCr8
mRatBN7.2187,683,060 - 87,692,772 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,684,019 - 87,694,569 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,083,770 - 93,090,520 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,549,756 - 101,556,506 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,842,069 - 94,848,819 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,286,956 - 91,297,459 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,287,917 - 91,296,656 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,417,890 - 92,442,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,552,695 - 87,559,447 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1187,630,805 - 87,637,558 (-)NCBI
Celera182,038,947 - 82,045,699 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CebpgRathereditary spastic paraplegia 75  ISOCEBPG (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegia 75ClinVarPMID:28492532

1 to 20 of 128 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CebpgRat(+)-catechin increases expressionISOCEBPG (Homo sapiens)6480464Catechin results in increased expression of CEBPG mRNACTDPMID:15465739
CebpgRat1,2-dimethylhydrazine decreases expressionISOCebpg (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of CEBPG mRNACTDPMID:22206623
CebpgRat1-nitropyrene increases expressionISOCEBPG (Homo sapiens)64804641-nitropyrene results in increased expression of CEBPG mRNACTDPMID:19041380
CebpgRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of CEBPG mRNACTDPMID:17557909
CebpgRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of CEBPG mRNACTDPMID:20068009
CebpgRat17beta-estradiol decreases expressionISOCebpg (Mus musculus)6480464Estradiol results in decreased expression of CEBPG mRNACTDPMID:39298647
CebpgRat17beta-estradiol increases expressionISOCEBPG (Homo sapiens)6480464Estradiol results in increased expression of CEBPG mRNACTDPMID:24758408 and PMID:31614463
CebpgRat17beta-estradiol multiple interactionsISOCEBPG (Homo sapiens)6480464EGF protein promotes the reaction [Estradiol results in increased expression of CEBPG mRNA]CTDPMID:24758408
CebpgRat1H-pyrazole increases expressionISOCebpg (Mus musculus)6480464pyrazole results in increased expression of CEBPG mRNACTDPMID:17945193
CebpgRat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOCEBPG (Homo sapiens)64804642 more ...CTDPMID:19095052
CebpgRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of CEBPG mRNACTDPMID:21215274 and PMID:33387578
CebpgRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of CEBPG mRNACTDPMID:32109520 and PMID:34747641
CebpgRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCEBPG (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of CEBPG mRNACTDPMID:20106945 and PMID:21632981
CebpgRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCebpg (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CEBPG mRNACTDPMID:21570461
CebpgRat2,3,7,8-Tetrachlorodibenzofuran increases expressionEXP 64804642 more ...CTDPMID:32109520
CebpgRat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionISOCEBPG (Homo sapiens)64804642 more ...CTDPMID:26705709
CebpgRat2-ethoxyethanol increases expressionEXP 64804642-ethoxyethanol results in increased expression of CEBPG mRNACTDPMID:19643169
CebpgRat2-hydroxypropanoic acid decreases expressionISOCEBPG (Homo sapiens)6480464Lactic Acid results in decreased expression of CEBPG mRNACTDPMID:30851411
CebpgRat2-methoxyethanol increases expressionEXP 6480464methyl cellosolve results in increased expression of CEBPG mRNACTDPMID:19643169
CebpgRat2-methylcholine affects expressionISOCEBPG (Homo sapiens)6480464beta-methylcholine affects the expression of CEBPG mRNACTDPMID:21179406

1 to 20 of 128 rows

Biological Process
1 to 20 of 24 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CebpgRatB cell differentiation involved_inISSUniProtKB:P535681600115GO_REF:0000024UniProtGO_REF:0000024
CebpgRatB cell differentiation involved_inISOCebpg (Mus musculus)1624291 PMID:1431100RGDPMID:1431100
CebpgRatDNA-templated transcription involved_inIEAInterPro:IPR0311061600115GO_REF:0000002InterProGO_REF:0000002
CebpgRatenucleate erythrocyte differentiation involved_inISOCebpg (Mus musculus)1624291 PMID:11060036RGDPMID:11060036
CebpgRatenucleate erythrocyte differentiation involved_inISSUniProtKB:P535681600115GO_REF:0000024UniProtGO_REF:0000024
CebpgRatimmune response involved_inISSUniProtKB:P535681600115GO_REF:0000024UniProtGO_REF:0000024
CebpgRatimmune response involved_inISOCebpg (Mus musculus)1624291 PMID:10587348RGDPMID:10587348
CebpgRatliver development involved_inIEP 69946PMID:1377818UniProt 
CebpgRatmRNA metabolic process acts_upstream_of_or_withinISOCebpg (Mus musculus)1624291MGI:2177053 PMID:9494081RGDPMID:9494081
CebpgRatnatural killer cell mediated cytotoxicity involved_inISSUniProtKB:P535681600115GO_REF:0000024UniProtGO_REF:0000024
CebpgRatnatural killer cell mediated cytotoxicity involved_inISOCebpg (Mus musculus)1624291 PMID:10587348RGDPMID:10587348
CebpgRatnegative regulation of DNA-binding transcription factor activity involved_inISSUniProtKB:P535688554148PMID:7501458UniProt 
CebpgRatnegative regulation of DNA-binding transcription factor activity involved_inISOCebpg (Mus musculus)1624291 PMID:7501458RGDPMID:7501458
CebpgRatpositive regulation of DNA repair involved_inISSUniProtKB:P535678554294PMID:16255782UniProt 
CebpgRatpositive regulation of DNA repair involved_inISOCEBPG (Homo sapiens)1624291 PMID:16255782RGDPMID:16255782
CebpgRatpositive regulation of transcription by RNA polymerase II involved_inISOCEBPG (Homo sapiens)1624291 PMID:15833715RGDPMID:15833715
CebpgRatpositive regulation of type II interferon production involved_inISSUniProtKB:P535681600115GO_REF:0000024UniProtGO_REF:0000024
CebpgRatpositive regulation of type II interferon production involved_inISOCebpg (Mus musculus)1624291 PMID:10587348RGDPMID:10587348
CebpgRatregulation of DNA-templated transcription involved_inIEAARBA:ARBA000281381600115GO_REF:0000117UniProtGO_REF:0000117
CebpgRatregulation of DNA-templated transcription involved_inIEAInterPro:IPR004827 and InterPro:IPR0463471600115GO_REF:0000002InterProGO_REF:0000002
1 to 20 of 24 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CebpgRatnucleoplasm located_inISOCEBPG (Homo sapiens)1624291 RGDGO_REF:0000052
CebpgRatnucleus located_inISOCebpg (Mus musculus)1624291 PMID:7501458RGDPMID:7501458
CebpgRatnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
CebpgRatnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
CebpgRatnucleus located_inISSUniProtKB:P535688554148PMID:7501458UniProt 
CebpgRatRNA polymerase II transcription regulator complex part_ofISOCEBPG (Homo sapiens)1624291 PMID:20102225 and PMID:23661758RGDPMID:20102225 and PMID:23661758

Molecular Function
1 to 20 of 22 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CebpgRatDNA binding enablesIDA 69946PMID:1377818UniProt 
CebpgRatDNA binding enablesIEAUniProtKB-KW:KW-02381600115GO_REF:0000043UniProtGO_REF:0000043
CebpgRatDNA binding enablesISOCebpg (Mus musculus)1624291 PMID:1431100RGDPMID:1431100
CebpgRatDNA binding enablesISOCEBPG (Homo sapiens)1624291 PMID:7665092RGDPMID:7665092
CebpgRatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISOCEBPG (Homo sapiens)1624291 PMID:15833715RGDPMID:15833715
CebpgRatDNA-binding transcription factor activity enablesIEAInterPro:IPR004827 more ...1600115GO_REF:0000002InterProGO_REF:0000002
CebpgRatDNA-binding transcription factor activity NOT|enablesISOCebpg (Mus musculus)1624291 PMID:7501458RGDPMID:7501458
CebpgRatDNA-binding transcription factor activity, RNA polymerase II-specific enablesIBAMGI:103573 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
CebpgRatDNA-binding transcription factor binding enablesISOCEBPG (Homo sapiens)1624291 PMID:7665092RGDPMID:7665092
CebpgRatDNA-binding transcription factor binding enablesISSUniProtKB:P535678554255PMID:7665092UniProt 
CebpgRatdouble-stranded DNA binding  IDA 69946 RGD 
CebpgRatprotein binding enablesISOCEBPG (Homo sapiens)1624291UniProtKB:O15212 more ...RGDPMID:16189514 more ...
CebpgRatprotein binding enablesISOCebpg (Mus musculus)1624291PR:P28033 more ...RGDPMID:12177065 and PMID:1371974
CebpgRatprotein binding enablesIPIUniProtKB:P0555469946PMID:1377818UniProt 
CebpgRatprotein binding enablesIPIUniProtKB:P2127269946PMID:1377818UniProt 
CebpgRatprotein-containing complex binding  IDA 69946heterodimerizationRGD 
CebpgRatRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesISOCebpg (Mus musculus)1624291 PMID:15833715RGDPMID:15833715
CebpgRatRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIBAMGI:103573 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
CebpgRatRNA polymerase II cis-regulatory region sequence-specific DNA binding, bending  IDA 69946 RGD 
CebpgRatsequence-specific DNA binding enablesISSUniProtKB:P535671600115GO_REF:0000024UniProtGO_REF:0000024
1 to 20 of 22 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CebpgRattuberculosis pathway  IEA 6907045 KEGGrno:05152

1 to 12 of 12 rows
#
Reference Title
Reference Citation
1. Ig/EBP (C/EBP gamma) is a transdominant negative inhibitor of C/EBP family transcriptional activators. Cooper C, etal., Nucleic Acids Res. 1995 Nov 11;23(21):4371-7.
2. Cloning of the cDNA encoding human C/EBP gamma, a protein binding to the PRE-I enhancer element of the human interleukin-4 promoter. Davydov IV, etal., Gene. 1995 Aug 19;161(2):271-5.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. CEBPG transcription factor correlates with antioxidant and DNA repair genes in normal bronchial epithelial cells but not in individuals with bronchogenic carcinoma. Mullins DN, etal., BMC Cancer. 2005 Oct 29;5:141.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Members of the C/EBP transcription factor family stimulate expression of the human and rat surfactant protein A (SP-A) genes. Rosenberg E, etal., Biochim Biophys Acta 2002 May 3;1575(1-3):82-90.
11. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
12. Molecular cloning of two C/EBP-related proteins that bind to the promoter and the enhancer of the alpha 1-fetoprotein gene. Further analysis of C/EBP beta and C/EBP gamma. Thomassin H, etal., Nucleic Acids Res 1992 Jun 25;20(12):3091-8.
1 to 12 of 12 rows
PMID:1371974   PMID:1431100   PMID:9494081   PMID:10587348   PMID:11060036   PMID:12213809   PMID:12223092   PMID:12477932   PMID:12757710   PMID:15833715   PMID:16735515  



Cebpg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,820,981 - 96,829,736 (-)NCBIGRCr8
mRatBN7.2187,683,060 - 87,692,772 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,684,019 - 87,694,569 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,083,770 - 93,090,520 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,549,756 - 101,556,506 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,842,069 - 94,848,819 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,286,956 - 91,297,459 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,287,917 - 91,296,656 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,417,890 - 92,442,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,552,695 - 87,559,447 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1187,630,805 - 87,637,558 (-)NCBI
Celera182,038,947 - 82,045,699 (-)NCBICelera
Cytogenetic Map1q21NCBI
CEBPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381933,373,709 - 33,382,686 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1933,373,685 - 33,382,686 (+)EnsemblGRCh38hg38GRCh38
GRCh371933,864,615 - 33,873,592 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,556,449 - 38,565,432 (+)NCBINCBI36Build 36hg18NCBI36
Build 341938,556,448 - 38,565,431NCBI
Celera1930,558,181 - 30,567,164 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1930,365,211 - 30,374,228 (+)NCBIHuRef
CHM1_11933,865,529 - 33,874,546 (+)NCBICHM1_1
T2T-CHM13v2.01935,893,494 - 35,902,471 (+)NCBIT2T-CHM13v2.0
Cebpg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39734,745,847 - 34,755,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl734,745,847 - 34,755,998 (-)EnsemblGRCm39 Ensembl
GRCm38735,046,422 - 35,056,566 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,046,422 - 35,056,573 (-)EnsemblGRCm38mm10GRCm38
MGSCv37735,831,441 - 35,841,585 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36734,755,545 - 34,765,263 (-)NCBIMGSCv36mm8
Celera730,182,296 - 30,192,439 (-)NCBICelera
Cytogenetic Map7B2NCBI
cM Map720.91NCBI
Cebpg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,137,106 - 3,141,733 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554683,137,106 - 3,141,733 (+)NCBIChiLan1.0ChiLan1.0
CEBPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22039,345,539 - 39,354,475 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11941,345,573 - 41,354,513 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01930,295,603 - 30,304,984 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11939,039,837 - 39,049,671 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1939,046,219 - 39,046,671 (+)Ensemblpanpan1.1panPan2
CEBPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,777,110 - 118,784,397 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,778,224 - 118,778,667 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,176,203 - 118,186,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,373,710 - 119,383,542 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,376,715 - 119,377,158 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11118,934,395 - 118,944,213 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,560,906 - 118,570,734 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,619,593 - 119,629,416 (-)NCBIUU_Cfam_GSD_1.0
Cebpg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093499,201,634 - 9,210,667 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365702,438,187 - 2,438,639 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365702,435,672 - 2,439,056 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEBPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl643,164,919 - 43,174,990 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1643,164,902 - 43,175,002 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,712,133 - 38,722,192 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEBPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1628,415,448 - 28,424,463 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660736,139,851 - 6,148,871 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cebpg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247949,729,876 - 9,736,516 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247949,727,616 - 9,736,729 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Cebpg
39 total Variants


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 92421894 92421895 T G snv ZF (KyushuU) View more Information

Predicted Target Of
Summary Value
Count of predictions:1423
Count of miRNA genes:355
Interacting mature miRNAs:508
Transcripts:ENSRNOT00000028703
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat

1 to 10 of 39 rows
RH127434  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,684,222 - 87,684,402 (+)MAPPERmRatBN7.2
Rnor_6.0191,288,118 - 91,288,297NCBIRnor6.0
Rnor_5.0192,419,053 - 92,419,232UniSTSRnor5.0
RGSC_v3.4187,550,898 - 87,551,077UniSTSRGSC3.4
Celera182,037,150 - 82,037,329UniSTS
RH 3.4 Map1861.7UniSTS
Cytogenetic Map1q21UniSTS
RH129375  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,684,082 - 87,684,237 (+)MAPPERmRatBN7.2
Rnor_6.0191,287,978 - 91,288,132NCBIRnor6.0
Rnor_5.0192,418,913 - 92,419,067UniSTSRnor5.0
RGSC_v3.4187,550,758 - 87,550,912UniSTSRGSC3.4
Celera182,037,010 - 82,037,164UniSTS
RH 3.4 Map1862.7UniSTS
Cytogenetic Map1q21UniSTS
RH132653  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,686,596 - 87,686,781 (+)MAPPERmRatBN7.2
Rnor_6.0191,290,492 - 91,290,676NCBIRnor6.0
Rnor_5.0192,421,427 - 92,421,611UniSTSRnor5.0
RGSC_v3.4187,553,272 - 87,553,456UniSTSRGSC3.4
Celera182,039,524 - 82,039,708UniSTS
RH 3.4 Map1862.0UniSTS
Cytogenetic Map1q21UniSTS
RH94774  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,686,019 - 87,686,280 (+)MAPPERmRatBN7.2
Rnor_6.0191,289,915 - 91,290,175NCBIRnor6.0
Rnor_5.0192,420,850 - 92,421,110UniSTSRnor5.0
RGSC_v3.4187,552,695 - 87,552,955UniSTSRGSC3.4
Celera182,038,947 - 82,039,207UniSTS
Cytogenetic Map1q21UniSTS
PMC305797P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,686,726 - 87,687,204 (+)MAPPERmRatBN7.2
Rnor_6.0191,290,622 - 91,291,099NCBIRnor6.0
Rnor_5.0192,421,557 - 92,422,034UniSTSRnor5.0
RGSC_v3.4187,553,402 - 87,553,879UniSTSRGSC3.4
Celera182,039,654 - 82,040,131UniSTS
Cytogenetic Map1q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000028703   ⟹   ENSRNOP00000028703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl187,684,019 - 87,694,569 (-)Ensembl
Rnor_6.0 Ensembl191,287,917 - 91,296,656 (-)Ensembl
RefSeq Acc Id: NM_012831   ⟹   NP_036963
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,822,984 - 96,829,736 (-)NCBI
mRatBN7.2187,686,020 - 87,692,772 (-)NCBI
Rnor_6.0191,289,915 - 91,296,667 (-)NCBI
Rnor_5.0192,417,890 - 92,442,666 (-)NCBI
RGSC_v3.4187,552,695 - 87,559,447 (-)RGD
Celera182,038,947 - 82,045,699 (-)RGD
Sequence:
RefSeq Acc Id: XM_039101538   ⟹   XP_038957466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,820,981 - 96,829,544 (-)NCBI
mRatBN7.2187,683,060 - 87,692,579 (-)NCBI
Protein RefSeqs NP_036963 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957466 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66589 (Get FASTA)   NCBI Sequence Viewer  
  CAA45745 (Get FASTA)   NCBI Sequence Viewer  
  EDM07634 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000103378
  ENSRNOP00000108317
GenBank Protein P26801 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036963   ⟸   NM_012831
- UniProtKB: P26801 (UniProtKB/Swiss-Prot),   B2GVA2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028703   ⟸   ENSRNOT00000028703
RefSeq Acc Id: XP_038957466   ⟸   XM_039101538
- Peptide Label: isoform X1
- UniProtKB: P26801 (UniProtKB/Swiss-Prot),   B2GVA2 (UniProtKB/TrEMBL)
bZIP

Name Modeler Protein Id AA Range Protein Structure
AF-P26801-F1-model_v2 AlphaFold P26801 1-150 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689964
Promoter ID:EPDNEW_R487
Type:initiation region
Name:Cebpg_1
Description:CCAAT/enhancer binding protein gamma
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0191,296,614 - 91,296,674EPDNEW


1 to 24 of 24 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-59996 BioCyc
Ensembl Genes ENSRNOG00000021144 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000150483 ENTREZGENE
  ENSRNOT00000169211 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7934938 IMAGE-MGC_LOAD
InterPro bZIP UniProtKB/Swiss-Prot
  bZIP_sf UniProtKB/Swiss-Prot
  C/EBP UniProtKB/Swiss-Prot
KEGG Report rno:25301 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188349 IMAGE-MGC_LOAD
NCBI Gene 25301 ENTREZGENE
PANTHER CCAAT/ENHANCER BINDING PROTEIN UniProtKB/Swiss-Prot
  CCAAT/ENHANCER-BINDING PROTEIN GAMMA UniProtKB/Swiss-Prot
Pfam bZIP_2 UniProtKB/Swiss-Prot
PhenoGen Cebpg PhenoGen
PROSITE BZIP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000021144 RatGTEx
SMART BRLZ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57959 UniProtKB/Swiss-Prot
TIGR TC232805
UniProt A0A8L2QFI0_RAT UniProtKB/TrEMBL
  B2GVA2 ENTREZGENE, UniProtKB/TrEMBL
  CEBPG_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 24 of 24 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Cebpg  CCAAT/enhancer binding protein gamma  Cebpg  CCAAT/enhancer binding protein (C/EBP), gamma  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Cebpg  CCAAT/enhancer binding protein (C/EBP), gamma    CCAAT/enhancer binding protein ,gamma  Name updated 1299863 APPROVED
2002-11-06 Cebpg  CCAAT/enhancer binding protein ,gamma    CCAAT/enhancer binding protein (C/EBP), gamma  Name updated 625702 APPROVED
2001-07-23 Cebpg  Rat homolog to a human CCAAT/enhancer binding protein - gamma      Name withdrawn 67952 WITHDRAWN
2001-07-23 Cebpg  CCAAT/enhancer binding protein (C/EBP), gamma      Name updated to reflect Human and Mouse nomenclature 67952 APPROVED