Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | autism spectrum disorder | | ISO | ALPP (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:35663546 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | autism spectrum disorder | | ISO | ALPP (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:35663546 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Alpp (Rattus norvegicus - Norway rat) |
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ALPP (Homo sapiens - human) |
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LOC100991867 (Pan paniscus - bonobo/pygmy chimpanzee) |
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LOC100157453 (Sus scrofa - pig) |
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ALPP (Chlorocebus sabaeus - green monkey) |
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Variants in Alpp
34 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | |||||||||||||
Low | 1 | 7 | |||||||||||
Below cutoff | 2 | 9 | 12 | 1 | 11 | 1 | 3 | 5 | 59 | 1 | 24 | 10 | 3 |
RefSeq Transcripts | XM_002727239 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_002730058 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC098189 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000009 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000025978 ⟹ ENSRNOP00000026095 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_002730058 ⟹ XP_002730104 | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | XP_002730104 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000026095 | ||
ENSRNOP00000026095.3 |
RefSeq Acc Id: | XP_002730104 ⟸ XM_002730058 |
- UniProtKB: | D4ADM6 (UniProtKB/TrEMBL), A6JWK4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000026095 ⟸ ENSRNOT00000025978 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D4ADM6-F1-model_v2 | AlphaFold | D4ADM6 | 1-529 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:2325055 | AgrOrtholog |
BioCyc Gene | G2FUF-26856 | BioCyc |
Ensembl Genes | ENSRNOG00000033672 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000025978.5 | UniProtKB/TrEMBL |
Gene3D-CATH | 3.40.720.10 | UniProtKB/TrEMBL |
InterPro | Alkaline_phosphatase | UniProtKB/TrEMBL |
Alkaline_phosphatase_AS | UniProtKB/TrEMBL | |
Alkaline_phosphatase_core | UniProtKB/TrEMBL | |
NCBI Gene | 100359675 | ENTREZGENE |
PANTHER | ALKALINE PHOSPHATASE, GERM CELL TYPE | UniProtKB/TrEMBL |
PTHR11596 | UniProtKB/TrEMBL | |
Pfam | Alk_phosphatase | UniProtKB/TrEMBL |
PhenoGen | Alpp | PhenoGen |
PRINTS | ALKPHPHTASE | UniProtKB/TrEMBL |
PROSITE | ALKALINE_PHOSPHATASE | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000033672 | RatGTEx |
SMART | alkPPc | UniProtKB/TrEMBL |
Superfamily-SCOP | Alkaline_phosphatase_core | UniProtKB/TrEMBL |
UniProt | A6JWK4 | ENTREZGENE, UniProtKB/TrEMBL |
D4ADM6 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2012-07-24 | Alpp | alkaline phosphatase, placental | LOC100359675 | rCG23846-like | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2010-05-20 | LOC100359675 | rCG23846-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL |