Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | juvenile rheumatoid arthritis | | ISO | STAB1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19565504 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | juvenile rheumatoid arthritis | | ISO | STAB1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19565504 | |
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# | Reference Title | Reference Citation |
1. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
2. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Stab1 (Rattus norvegicus - Norway rat) |
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STAB1 (Homo sapiens - human) |
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Stab1 (Mus musculus - house mouse) |
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Stab1 (Chinchilla lanigera - long-tailed chinchilla) |
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STAB1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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STAB1 (Canis lupus familiaris - dog) |
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Stab1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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STAB1 (Sus scrofa - pig) |
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STAB1 (Chlorocebus sabaeus - green monkey) |
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Stab1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Stab1
100 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 23 | 5 | 4 | 12 | 4 | 8 | 16 | 29 | 1 | ||||
Low | 3 | 20 | 52 | 37 | 7 | 37 | 8 | 11 | 66 | 19 | 12 | 10 | 8 |
Below cutoff |
RefSeq Transcripts | NM_001427304 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006222122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006222123 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006222125 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008771053 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008771054 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008771055 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095096 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095098 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095100 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063274969 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_214279 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005494942 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC095672 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH474046 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ233524 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000016 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000025394 ⟹ ENSRNOP00000025394 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000113467 ⟹ ENSRNOP00000077821 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001427304 ⟹ NP_001414233 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_008771053 ⟹ XP_008769275 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008771054 ⟹ XP_008769276 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008771055 ⟹ XP_008769277 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039095096 ⟹ XP_038951024 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039095098 ⟹ XP_038951026 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039095100 ⟹ XP_038951028 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063274969 ⟹ XP_063131039 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_005494942 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_001414233 | (Get FASTA) | NCBI Sequence Viewer |
XP_008769275 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008769276 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008769277 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951024 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951026 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951028 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063131039 | (Get FASTA) | NCBI Sequence Viewer | |
XP_214279 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL88963 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000025394 | ||
ENSRNOP00000025394.6 | |||
ENSRNOP00000077821 | |||
ENSRNOP00000077821.1 |
RefSeq Acc Id: | XP_008769277 ⟸ XM_008771055 |
- Peptide Label: | isoform X4 |
- UniProtKB: | D3ZWH1 (UniProtKB/TrEMBL), A6KG05 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008769276 ⟸ XM_008771054 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A6KG05 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008769275 ⟸ XM_008771053 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I5Y895 (UniProtKB/TrEMBL), A6KG05 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000025394 ⟸ ENSRNOT00000025394 |
RefSeq Acc Id: | XP_038951024 ⟸ XM_039095096 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A6KG05 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951026 ⟸ XM_039095098 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A6KG05 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951028 ⟸ XM_039095100 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | ENSRNOP00000077821 ⟸ ENSRNOT00000113467 |
RefSeq Acc Id: | NP_001414233 ⟸ NM_001427304 |
- Peptide Label: | precursor |
RefSeq Acc Id: | XP_063131039 ⟸ XM_063274969 |
- Peptide Label: | isoform X6 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZWH1-F1-model_v2 | AlphaFold | D3ZWH1 | 1-2252 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13699925 | ||||||||
Promoter ID: | EPDNEW_R10448 | ||||||||
Type: | single initiation site | ||||||||
Name: | Stab1_1 | ||||||||
Description: | stabilin 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:2324745 | AgrOrtholog |
BioCyc Gene | G2FUF-12160 | BioCyc |
Ensembl Genes | ENSRNOG00000018434 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000025394.8 | UniProtKB/TrEMBL |
ENSRNOT00000113467.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.30.180.10 | UniProtKB/TrEMBL |
3.10.100.10 | UniProtKB/TrEMBL | |
Laminin | UniProtKB/TrEMBL | |
Tie2 ligand-binding domain superfamily | UniProtKB/TrEMBL | |
InterPro | C-type_lectin-like | UniProtKB/TrEMBL |
C-type_lectin_fold | UniProtKB/TrEMBL | |
EGF-like_Ca-bd_dom | UniProtKB/TrEMBL | |
EGF_3 | UniProtKB/TrEMBL | |
EGF_dom_MSP1-like | UniProtKB/TrEMBL | |
EGF_laminin | UniProtKB/TrEMBL | |
FAS1_dom_sf | UniProtKB/TrEMBL | |
FAS1_domain | UniProtKB/TrEMBL | |
Link | UniProtKB/TrEMBL | |
KEGG Report | rno:100363145 | UniProtKB/TrEMBL |
NCBI Gene | 100363145 | ENTREZGENE |
PANTHER | STABILIN | UniProtKB/TrEMBL |
STABILIN-1 | UniProtKB/TrEMBL | |
Pfam | EGF | UniProtKB/TrEMBL |
EGF_3 | UniProtKB/TrEMBL | |
Fasciclin | UniProtKB/TrEMBL | |
Xlink | UniProtKB/TrEMBL | |
PhenoGen | Stab1 | PhenoGen |
PROSITE | EGF_1 | UniProtKB/TrEMBL |
EGF_2 | UniProtKB/TrEMBL | |
EGF_3 | UniProtKB/TrEMBL | |
FAS1 | UniProtKB/TrEMBL | |
LINK_1 | UniProtKB/TrEMBL | |
LINK_2 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000018434 | RatGTEx |
SMART | EGF | UniProtKB/TrEMBL |
EGF_CA | UniProtKB/TrEMBL | |
EGF_Lam | UniProtKB/TrEMBL | |
FAS1 | UniProtKB/TrEMBL | |
LINK | UniProtKB/TrEMBL | |
Superfamily-SCOP | BIgH3_FAS1 | UniProtKB/TrEMBL |
C-type_lectin_fold | UniProtKB/TrEMBL | |
EGF/Laminin | UniProtKB/TrEMBL | |
UniProt | A0A8I5Y895 | ENTREZGENE, UniProtKB/TrEMBL |
A6KG05 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZWH1 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2012-08-30 | LOC100363145 | stabilin 1 | Stab1 | stabilin 1 | Data merged from RGD:1310327 | 737654 | APPROVED |
2012-08-30 | Stab1 | stabilin 1 | LOC100363145 | stabilin 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2010-05-12 | LOC100363145 | stabilin 1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2008-04-30 | Stab1 | stabilin 1 | Stab1_predicted | stabilin 1 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Stab1_predicted | stabilin 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |