Rps20-ps11 (ribosomal protein S20, pseudogene 11) - Rat Genome Database

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Gene: Rps20-ps11 (ribosomal protein S20, pseudogene 11) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps20-ps11 (Ensembl: Rps20)
Name: ribosomal protein S20, pseudogene 11 (Ensembl:ribosomal protein S20)
RGD ID: 2324274
Description: Orthologous to human RPS20 (ribosomal protein S20); INTERACTS WITH bisphenol A.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S20; LOC100362684; ribosomal protein S20-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Rps20  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85160,825,066 - 160,825,584 (+)NCBIGRCr8
mRatBN7.25155,541,751 - 155,542,269 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl94,159,021 - 4,159,547 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl322,430,259 - 22,430,740 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05161,889,229 - 161,889,746 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5161,889,342 - 161,889,701 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl322,964,230 - 22,964,732 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05165,588,421 - 165,588,937 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45162,082,445 - 162,082,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5153,870,243 - 153,870,778 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in Rps20-ps11
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2
Medium 3 43 57 41 17 41 8 11 74 35 41 11 8
Low 6 6 6 13 6 8
Below cutoff 2 22 18 18 1 18 21 15 15

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000040481   ⟹   ENSRNOP00000066077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5155,541,742 - 155,542,269 (+)Ensembl
Rnor_6.0 Ensembl5161,889,342 - 161,889,701 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000041813   ⟹   ENSRNOP00000065886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,430,259 - 22,430,740 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000051449   ⟹   ENSRNOP00000069127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl94,159,021 - 4,159,547 (-)Ensembl
RefSeq Acc Id: NR_176832
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85160,825,066 - 160,825,584 (+)NCBI
mRatBN7.25155,541,751 - 155,542,269 (+)NCBI
Protein Sequences
GenBank Protein AAH58496 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000066077   ⟸   ENSRNOT00000040481
RefSeq Acc Id: ENSRNOP00000065886   ⟸   ENSRNOT00000041813
RefSeq Acc Id: ENSRNOP00000069127   ⟸   ENSRNOT00000051449

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P60868-F1-model_v2 AlphaFold P60868 1-119 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324274 AgrOrtholog
BioCyc Gene G2FUF-39300 BioCyc
Ensembl Genes ENSRNOG00000029627 Ensembl
  ENSRNOG00000030345 Ensembl
  ENSRNOG00000030596 Ensembl
  ENSRNOG00000071148 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000040481 ENTREZGENE
NCBI Gene 100362684 ENTREZGENE
PhenoGen Rps20-ps11 PhenoGen
RatGTEx ENSRNOG00000029627 RatGTEx
  ENSRNOG00000030345 RatGTEx
  ENSRNOG00000030596 RatGTEx
  ENSRNOG00000071148 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-15 Rps20-ps11  ribosomal protein S20, pseudogene 11  LOC100362684  ribosomal protein S20-like  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2010-05-06 LOC100362684  ribosomal protein S20-like      Symbol and Name status set to provisional 70820 PROVISIONAL