Rplp2l3 (ribosomal protein lateral stalk subunit P2 like 3) - Rat Genome Database

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Gene: Rplp2l3 (ribosomal protein lateral stalk subunit P2 like 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rplp2l3
Name: ribosomal protein lateral stalk subunit P2 like 3
RGD ID: 2324107
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translational elongation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPLP2 (ribosomal protein lateral stalk subunit P2).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S acidic ribosomal protein P2-like; large ribosomal subunit protein P2-like; LOC100362751; ribosomal protein P2-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,098,898 - 43,287,569 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1443,098,898 - 43,105,511 (-)EnsemblGRCr8
mRatBN7.21442,745,280 - 42,745,734 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1442,745,272 - 42,745,703 (-)EnsemblmRatBN7.2
Rnor_6.01444,375,428 - 44,375,880 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,375,457 - 44,375,804 (-)Ensemblrn6Rnor6.0
Rnor_5.01444,194,975 - 44,195,427 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41445,439,133 - 45,453,103 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1441,896,245 - 41,896,697 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rplp2l3
1249 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:20
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000042825
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143123808072970315Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142252151767521517Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141889519263895192Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141790672654251504Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
RH127513  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21567,638,524 - 67,638,739 (-)MAPPERmRatBN7.2
mRatBN7.21567,638,524 - 67,638,739 (+)MAPPERmRatBN7.2
mRatBN7.21442,745,339 - 42,745,554 (+)MAPPERmRatBN7.2
Rnor_6.01444,375,488 - 44,375,702NCBIRnor6.0
Rnor_6.01575,067,443 - 75,067,657NCBIRnor6.0
Rnor_5.01444,195,035 - 44,195,249UniSTSRnor5.0
Rnor_5.01578,628,135 - 78,628,349UniSTSRnor5.0
RGSC_v3.41445,439,196 - 45,439,410UniSTSRGSC3.4
RGSC_v3.41574,072,195 - 74,072,409UniSTSRGSC3.4
Celera1567,074,812 - 67,075,026UniSTS
Celera1441,896,305 - 41,896,519UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map1q41UniSTS
RH129225  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21567,638,528 - 67,638,740 (+)MAPPERmRatBN7.2
mRatBN7.21442,745,338 - 42,745,550 (-)MAPPERmRatBN7.2
mRatBN7.21442,745,338 - 42,745,550 (+)MAPPERmRatBN7.2
mRatBN7.21567,638,528 - 67,638,740 (-)MAPPERmRatBN7.2
Rnor_6.01575,067,447 - 75,067,658NCBIRnor6.0
Rnor_6.01444,375,487 - 44,375,698NCBIRnor6.0
Rnor_5.01444,195,034 - 44,195,245UniSTSRnor5.0
Rnor_5.01578,628,139 - 78,628,350UniSTSRnor5.0
RGSC_v3.41445,439,195 - 45,439,406UniSTSRGSC3.4
RGSC_v3.41574,072,199 - 74,072,410UniSTSRGSC3.4
Celera1567,074,816 - 67,075,027UniSTS
Celera1441,896,304 - 41,896,515UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map1q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 10 56 131 81 82 51 68 51 6 296 155 11 112 68 73 31 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000042825   ⟹   ENSRNOP00000041625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1443,098,922 - 43,105,511 (-)Ensembl
mRatBN7.2 Ensembl1442,745,272 - 42,745,703 (-)Ensembl
Rnor_6.0 Ensembl1444,375,457 - 44,375,804 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000133360   ⟹   ENSRNOP00000107305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1443,098,898 - 43,099,381 (-)Ensembl
RefSeq Acc Id: XM_039092742   ⟹   XP_038948670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,098,898 - 43,287,569 (-)NCBI
mRatBN7.21442,745,280 - 42,745,734 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038948670 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041625
  ENSRNOP00000041625.1
  ENSRNOP00000107305.1
Ensembl Acc Id: ENSRNOP00000041625   ⟸   ENSRNOT00000042825
RefSeq Acc Id: XP_038948670   ⟸   XM_039092742
- UniProtKB: D3ZN03 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000107305   ⟸   ENSRNOT00000133360

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZN03-F1-model_v2 AlphaFold D3ZN03 1-115 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699319
Promoter ID:EPDNEW_R9837
Type:multiple initiation site
Name:LOC100362751_1
Description:ribosomal protein P2-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01444,375,862 - 44,375,922EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324107 AgrOrtholog
BioCyc Gene G2FUF-15748 BioCyc
Ensembl Genes ENSRNOG00000031052 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042825 ENTREZGENE
  ENSRNOT00000042825.3 UniProtKB/TrEMBL
  ENSRNOT00000133360.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1410 UniProtKB/TrEMBL
InterPro P1/P2_N_sf UniProtKB/TrEMBL
  Ribosomal_L12 UniProtKB/TrEMBL
  Ribosomal_P2 UniProtKB/TrEMBL
NCBI Gene 100362751 ENTREZGENE
PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2 UniProtKB/TrEMBL
  PTHR21141 UniProtKB/TrEMBL
Pfam Ribosomal_60s UniProtKB/TrEMBL
PhenoGen Rplp2l3 PhenoGen
RatGTEx ENSRNOG00000031052 RatGTEx
UniProt A0ABK0LYY2_RAT UniProtKB/TrEMBL
  D3ZN03 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rplp2l3  ribosomal protein lateral stalk subunit P2 like 3  Rplp2l1  ribosomal protein lateral stalk subunit P2 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rplp2l1  ribosomal protein lateral stalk subunit P2 like 1  LOC100362751  ribosomal protein P2-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100362751  ribosomal protein P2-like      Symbol and Name status set to provisional 70820 PROVISIONAL