Cldn25 (claudin 25) - Rat Genome Database

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Gene: Cldn25 (claudin 25) Rattus norvegicus
Analyze
Symbol: Cldn25
Name: claudin 25
RGD ID: 2322263
Description: Predicted to enable structural molecule activity. Predicted to be located in tight junction. Predicted to be active in bicellular tight junction and plasma membrane. Orthologous to human CLDN25 (claudin 25); INTERACTS WITH bisphenol A (ortholog); fluoranthene (ortholog); maleic acid (ortholog).
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: claudin 25-like; LOC100360390; putative claudin-25
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8858,288,411 - 58,289,145 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl858,288,411 - 58,289,145 (-)EnsemblGRCr8
mRatBN7.2849,391,930 - 49,392,664 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,391,975 - 49,392,664 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx854,897,796 - 54,898,530 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0853,176,669 - 53,177,403 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0851,040,920 - 51,041,654 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd859,112,319 - 59,113,053 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive861,309,447 - 61,310,181 (-)NCBILyon_Normotensive
Lyon_Hypertensive859,740,167 - 59,740,901 (-)NCBILyon_Hypertensive
F344_StmMcwi851,145,132 - 51,145,866 (-)NCBIF344_StmMcwi
Rnor_6.0853,360,490 - 53,362,387 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl853,361,323 - 53,362,006 (-)Ensemblrn6Rnor6.0
Rnor_5.0851,975,500 - 51,976,389 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4852,311,669 - 52,312,358 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera848,948,370 - 48,950,267 (-)NCBICelera
Cytogenetic Map8q23NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:30734065  


Genomics

Comparative Map Data
Cldn25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8858,288,411 - 58,289,145 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl858,288,411 - 58,289,145 (-)EnsemblGRCr8
mRatBN7.2849,391,930 - 49,392,664 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,391,975 - 49,392,664 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx854,897,796 - 54,898,530 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0853,176,669 - 53,177,403 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0851,040,920 - 51,041,654 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd859,112,319 - 59,113,053 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive861,309,447 - 61,310,181 (-)NCBILyon_Normotensive
Lyon_Hypertensive859,740,167 - 59,740,901 (-)NCBILyon_Hypertensive
F344_StmMcwi851,145,132 - 51,145,866 (-)NCBIF344_StmMcwi
Rnor_6.0853,360,490 - 53,362,387 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl853,361,323 - 53,362,006 (-)Ensemblrn6Rnor6.0
Rnor_5.0851,975,500 - 51,976,389 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4852,311,669 - 52,312,358 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera848,948,370 - 48,950,267 (-)NCBICelera
Cytogenetic Map8q23NCBI
CLDN25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811113,779,796 - 113,780,485 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11113,779,796 - 113,780,485 (+)Ensemblhg38GRCh38
GRCh3711113,650,518 - 113,651,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611113,155,728 - 113,156,417 (+)NCBIBuild 36Build 36hg18NCBI36
Celera11110,803,400 - 110,804,089 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11109,579,048 - 109,579,737 (+)NCBIHuRef
CHM1_111113,533,813 - 113,534,502 (+)NCBICHM1_1
T2T-CHM13v2.011113,790,104 - 113,790,793 (+)NCBIT2T-CHM13v2.0
Cldn25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39948,958,857 - 48,959,642 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl948,958,902 - 48,959,642 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38949,047,557 - 49,048,342 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl949,047,602 - 49,048,294 (-)Ensemblmm10GRCm38
MGSCv37948,855,781 - 48,856,372 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36948,855,707 - 48,856,399 (-)NCBIMGSCv36mm8
Celera946,344,959 - 46,345,550 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.58NCBI
Cldn25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495565958,925 - 59,882 (-)NCBIChiLan1.0ChiLan1.0
CLDN25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29114,522,941 - 114,523,630 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111115,617,299 - 115,617,988 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011108,658,470 - 108,659,159 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111112,500,922 - 112,501,611 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11112,500,922 - 112,501,611 (+)EnsemblpanPan2panpan1.1
CLDN25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1519,491,351 - 19,492,543 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl519,491,754 - 19,492,440 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha519,415,008 - 19,415,930 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0519,512,215 - 19,513,137 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl519,512,405 - 19,513,091 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,576,093 - 19,577,015 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0519,476,833 - 19,477,755 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0519,524,980 - 19,525,902 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cldn25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494795,885,652 - 95,886,559 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936612819,228 - 819,917 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936612819,228 - 819,917 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl941,407,272 - 41,408,995 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1941,407,244 - 41,408,058 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2946,225,012 - 46,225,668 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11105,157,968 - 105,159,832 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1105,158,252 - 105,158,938 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604320,860,354 - 20,861,043 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldn25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247849,259,743 - 9,271,806 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247849,255,348 - 9,272,047 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cldn25
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1843,537,359 - 43,538,048 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cldn25
6 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
5684993Bmd84Bone mineral density QTL 844.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)85158969958991895Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83776085958991895Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83776085961459705Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84961020468373388Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)85076395167219641Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
6 7 19 24 12 10 2 47 2 2 99 72 18 14 24 8 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000077145   ⟹   ENSRNOP00000071515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl858,288,411 - 58,289,145 (-)Ensembl
mRatBN7.2 Ensembl849,391,975 - 49,392,664 (-)Ensembl
Rnor_6.0 Ensembl853,361,323 - 53,362,006 (-)Ensembl
RefSeq Acc Id: NM_001398571   ⟹   NP_001385500
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,288,411 - 58,289,145 (-)NCBI
mRatBN7.2849,391,930 - 49,392,664 (-)NCBI
Dahl_SR_JrHsd859,112,319 - 59,113,053 (-)NCBI
Lyon_Normotensive861,309,447 - 61,310,181 (-)NCBI
Lyon_Hypertensive859,740,167 - 59,740,901 (-)NCBI
F344_StmMcwi851,145,132 - 51,145,866 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001385500 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071515
  ENSRNOP00000071515.2
Ensembl Acc Id: ENSRNOP00000071515   ⟸   ENSRNOT00000077145
RefSeq Acc Id: NP_001385500   ⟸   NM_001398571
- UniProtKB: A0A0G2K0N4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K0N4-F1-model_v2 AlphaFold A0A0G2K0N4 1-228 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2322263 AgrOrtholog
BioCyc Gene G2FUF-30588 BioCyc
Ensembl Genes ENSRNOG00000057454 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000077145 ENTREZGENE
  ENSRNOT00000077145.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
NCBI Gene 100360390 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PhenoGen Cldn25 PhenoGen
PRINTS CLAUDIN UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000057454 RatGTEx
UniProt A0A0G2K0N4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-01 Cldn25  claudin 25  LOC100360390  claudin 25-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100360390  claudin 25-like      Symbol and Name status set to provisional 70820 PROVISIONAL