LOC100360491 (60S ribosomal protein L13-like) - Rat Genome Database

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Gene: LOC100360491 (60S ribosomal protein L13-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100360491
Name: 60S ribosomal protein L13-like
RGD ID: 2322065
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: large ribosomal subunit protein eL13-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,568,584 - 85,575,407 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1485,570,399 - 85,571,393 (+)EnsemblGRCr8
mRatBN7.21481,356,644 - 81,357,364 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,356,642 - 81,357,364 (-)EnsemblmRatBN7.2
Rnor_6.01486,751,142 - 86,751,844 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,751,157 - 86,751,792 (+)Ensemblrn6Rnor6.0
Rnor_5.01480,385,623 - 80,386,348 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41487,245,025 - 87,245,660 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1480,238,321 - 80,239,023 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC100360491
76 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 6 48 139 73 68 45 85 45 6 294 165 11 118 66 87 23 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000067997   ⟹   ENSRNOP00000064082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1481,356,642 - 81,357,364 (-)Ensembl
Rnor_6.0 Ensembl1486,751,157 - 86,751,792 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163783   ⟹   ENSRNOP00000112009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1485,570,399 - 85,571,393 (+)Ensembl
RefSeq Acc Id: XM_063273845   ⟹   XP_063129915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,568,584 - 85,575,407 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063129915 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000112009.1
Ensembl Acc Id: ENSRNOP00000064082   ⟸   ENSRNOT00000067997
RefSeq Acc Id: XP_063129915   ⟸   XM_063273845
- UniProtKB: D3ZD02 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112009   ⟸   ENSRNOT00000163783

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZRM9-F1-model_v2 AlphaFold D3ZRM9 1-211 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699485
Promoter ID:EPDNEW_R10000
Type:multiple initiation site
Name:LOC100360491_1
Description:60S ribosomal protein L13-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01486,751,119 - 86,751,179EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2322065 AgrOrtholog
BioCyc Gene G2FUF-15084 BioCyc
Ensembl Genes ENSRNOG00000061438 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000163783.1 UniProtKB/TrEMBL
NCBI Gene 100360491 ENTREZGENE
PhenoGen LOC100360491 PhenoGen
RatGTEx ENSRNOG00000061438 RatGTEx
UniProt A0ABK0LZB3_RAT UniProtKB/TrEMBL
  D3ZD02 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-06 LOC100360491  60S ribosomal protein L13-like      Symbol and Name status set to provisional 70820 PROVISIONAL