Rpl19l4 (ribosomal protein L19 like 4) - Rat Genome Database

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Gene: Rpl19l4 (ribosomal protein L19 like 4) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl19l4
Name: ribosomal protein L19 like 4
RGD ID: 2321393
Description: Predicted to enable single-stranded RNA binding activity. Predicted to be involved in retrotransposition. Predicted to be located in membrane and ribosome. Predicted to be part of ribonucleoprotein complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100364265; ribosomal protein L19-like; uncharacterized protein LOC100364265
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8521,686,113 - 21,689,366 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl521,678,488 - 21,694,111 (-)EnsemblGRCr8
mRatBN7.2516,880,899 - 16,898,782 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl516,880,899 - 16,896,524 (-)EnsemblmRatBN7.2
Rnor_6.0516,766,958 - 16,782,819 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl516,767,024 - 16,782,647 (-)Ensemblrn6Rnor6.0
Rnor_5.0521,544,713 - 21,560,336 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera516,255,402 - 16,271,269 (-)NCBICelera
Cytogenetic Map5q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl19l4
11 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000072844
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)51373115343590997Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5862723052665523Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51460607859606078Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1578774Tcas8Tongue tumor susceptibility QTL 83.47tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)51570745160707451Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5692228237468560Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51748608062486080Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)51297048025683802Rat
2303577Gluco47Glucose level QTL 473blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51652001961520019Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)51748608062486080Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5862723053627230Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
9 10 45 129 76 75 44 34 44 6 232 108 9 106 63 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000072844   ⟹   ENSRNOP00000067202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl521,678,488 - 21,694,111 (-)Ensembl
mRatBN7.2 Ensembl516,880,899 - 16,896,524 (-)Ensembl
Rnor_6.0 Ensembl516,767,024 - 16,782,647 (-)Ensembl
RefSeq Acc Id: XM_063288519   ⟹   XP_063144589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8521,686,113 - 21,689,366 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063144589 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067202.1
Ensembl Acc Id: ENSRNOP00000067202   ⟸   ENSRNOT00000072844
RefSeq Acc Id: XP_063144589   ⟸   XM_063288519
Protein Domains
Large ribosomal subunit protein eL19

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6QI82-F1-model_v2 AlphaFold Q6QI82 1-632 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-42113 BioCyc
Ensembl Genes ENSRNOG00000012088 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072844.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.240 UniProtKB/TrEMBL
  L1 transposable element, trimerization domain UniProtKB/TrEMBL
InterPro 60S_ribosomal_L19/L19e_sf UniProtKB/TrEMBL
  Ribosomal_eL19 UniProtKB/TrEMBL
  Ribosomal_L19/L19e UniProtKB/TrEMBL
  Ribosomal_L19e_C UniProtKB/TrEMBL
NCBI Gene 100364265 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L19 UniProtKB/TrEMBL
Pfam Ribosomal_L19e_C UniProtKB/TrEMBL
PhenoGen Rpl19l4 PhenoGen
RatGTEx ENSRNOG00000012088 RatGTEx
SMART Ribosomal_L19e UniProtKB/TrEMBL
Superfamily-SCOP Ribosomal_L19/L19e UniProtKB/TrEMBL
UniProt M0RC92_RAT UniProtKB/TrEMBL
  Q6QI82_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl19l4  ribosomal protein L19 like 4  LOC100364265  ribosomal protein L19-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100364265  ribosomal protein L19-like      Symbol and Name status set to provisional 70820 PROVISIONAL