Rps12l9 (ribosomal protein S12 like 9) - Rat Genome Database

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Gene: Rps12l9 (ribosomal protein S12 like 9) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps12l9 (Ensembl: Rps12l2)
Name: ribosomal protein S12 like 9 (Ensembl:ribosomal protein S12-like 2)
RGD ID: 2321033
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in maintenance of translational fidelity and ribosomal small subunit biogenesis. Part of cytosolic large ribosomal subunit and cytosolic small ribosomal subunit. Orthologous to human RPS12 (ribosomal protein S12).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S12-like; LOC100359593; LOC100364427; ribosomal protein S12-like; small ribosomal subunit protein eS12-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,744,739 - 85,745,265 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl185,744,750 - 85,745,253 (+)EnsemblGRCr8
mRatBN7.2176,616,556 - 76,617,067 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,616,570 - 76,617,079 (+)EnsemblmRatBN7.2
Rnor_6.0177,820,655 - 77,821,156 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0179,085,342 - 79,085,837 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4176,268,115 - 76,268,441 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera171,106,975 - 71,107,460 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:925037   PMID:3308890   PMID:3366245   PMID:28131823  


Genomics

Variants

.
Variants in Rps12l9
3 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 49 67 132 95 11 48 30 32 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000073324   ⟹   ENSRNOP00000093531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,616,570 - 76,617,079 (+)Ensembl
RefSeq Acc Id: XM_039100817   ⟹   XP_038956745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,744,739 - 85,745,265 (+)NCBI
mRatBN7.2176,616,556 - 76,617,067 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038956745 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000097853
RefSeq Acc Id: XP_038956745   ⟸   XM_039100817
- UniProtKB: P63324 (UniProtKB/Swiss-Prot),   A0A8I6AKK1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000093531   ⟸   ENSRNOT00000073324

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2321033 AgrOrtholog
BioCyc Gene G2FUF-60634 BioCyc
Ensembl Genes ENSRNOG00000062534 Ensembl
  ENSRNOG00000067461 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000073153 ENTREZGENE
Gene3D-CATH 3.30.1330.30 UniProtKB/Swiss-Prot
InterPro L30e-like UniProtKB/Swiss-Prot
  Ribosomal_eS12_CS UniProtKB/Swiss-Prot
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/Swiss-Prot
  Ribosomal_S12e UniProtKB/Swiss-Prot
NCBI Gene 100364427 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S12 UniProtKB/Swiss-Prot
Pfam Ribosomal_L7Ae UniProtKB/Swiss-Prot
PhenoGen Rps12l9 PhenoGen
PRINTS RIBSOMALS12E UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_S12E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000062534 RatGTEx
  ENSRNOG00000067461 RatGTEx
Superfamily-SCOP L30e-like UniProtKB/Swiss-Prot
UniProt A0A8I6AKK1 ENTREZGENE
  P63324 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P09388 UniProtKB/Swiss-Prot
  P12728 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps12l9  ribosomal protein S12 like 9  LOC100364427  ribosomal protein S12-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC100364427  ribosomal protein S12-like  LOC100359593  ribosomal protein S12-like  Data merged from RGD:2323601 737654 PROVISIONAL
2010-05-06 LOC100359593  ribosomal protein S12-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100364427  ribosomal protein S12-like      Symbol and Name status set to provisional 70820 PROVISIONAL