Cdh22 (cadherin 22) - Rat Genome Database

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Gene: Cdh22 (cadherin 22) Rattus norvegicus
Analyze
Symbol: Cdh22
Name: cadherin 22
RGD ID: 2321
Description: Predicted to enable beta-catenin binding activity and cadherin binding activity. Involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Orthologous to human CDH22 (cadherin 22); INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 2-acetamidofluorene; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cadherin-22; PB-cadherin; pituitary and brain cadherin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,264,869 - 174,389,940 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3174,264,869 - 174,390,142 (-)EnsemblGRCr8
mRatBN7.23153,845,563 - 153,970,630 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,845,787 - 153,970,588 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3157,654,361 - 157,779,291 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03166,153,335 - 166,278,266 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,897,109 - 164,019,650 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,574,993 - 161,971,102 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,575,631 - 161,917,285 (-)Ensemblrn6Rnor6.0
Rnor_5.03167,759,873 - 168,153,365 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43156,155,004 - 156,275,540 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3152,449,958 - 152,516,313 (-)NCBICelera
RGSC_v3.16134,126,192 - 134,128,100 (+)NCBI
Cytogenetic Map3q42NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-acetamidofluorene  (EXP)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
aflatoxin B1  (ISO)
allethrin  (EXP)
ammonium chloride  (EXP)
amosite asbestos  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP)
choline  (ISO)
crocidolite asbestos  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
dichlorine  (EXP)
diuron  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
genistein  (EXP)
glyphosate  (EXP)
L-ascorbic acid  (EXP)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methoxychlor  (EXP)
morphine  (ISO)
N-methyl-N-nitrosourea  (EXP)
ozone  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
pyrethrins  (EXP)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
testosterone  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
undecane  (EXP)
valproic acid  (ISO)
venlafaxine hydrochloride  (EXP)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Molecular cloning and characterization of a newly identified member of the cadherin family, PB-cadherin. Sugimoto K, etal., J Biol Chem 1996 May 10;271(19):11548-56.
7. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:16038895   PMID:17187413  


Genomics

Comparative Map Data
Cdh22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,264,869 - 174,389,940 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3174,264,869 - 174,390,142 (-)EnsemblGRCr8
mRatBN7.23153,845,563 - 153,970,630 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,845,787 - 153,970,588 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3157,654,361 - 157,779,291 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03166,153,335 - 166,278,266 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,897,109 - 164,019,650 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,574,993 - 161,971,102 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,575,631 - 161,917,285 (-)Ensemblrn6Rnor6.0
Rnor_5.03167,759,873 - 168,153,365 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43156,155,004 - 156,275,540 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3152,449,958 - 152,516,313 (-)NCBICelera
RGSC_v3.16134,126,192 - 134,128,100 (+)NCBI
Cytogenetic Map3q42NCBI
CDH22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382046,173,739 - 46,308,498 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2046,173,737 - 46,309,009 (-)Ensemblhg38GRCh38
GRCh372044,802,378 - 44,937,137 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362044,235,783 - 44,313,741 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342044,235,782 - 44,313,741NCBI
Celera2041,513,832 - 41,591,744 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,543,684 - 41,678,251 (-)NCBIHuRef
CHM1_12044,704,993 - 44,839,771 (-)NCBICHM1_1
T2T-CHM13v2.02047,909,792 - 48,044,527 (-)NCBIT2T-CHM13v2.0
Cdh22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,953,421 - 165,076,892 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,953,427 - 165,076,773 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382165,111,501 - 165,234,924 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2165,111,507 - 165,234,853 (-)Ensemblmm10GRCm38
MGSCv372164,937,007 - 165,060,237 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362164,802,714 - 164,925,924 (-)NCBIMGSCv36mm8
Celera2171,049,727 - 171,171,625 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.43NCBI
Cdh22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544511,084,448 - 11,151,871 (+)Ensembl
ChiLan1.0NW_00495544511,084,448 - 11,151,871 (+)NCBIChiLan1.0ChiLan1.0
CDH22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,913,754 - 52,048,497 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,906,860 - 52,041,601 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,511,264 - 42,645,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,596,777 - 43,674,105 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,597,548 - 43,674,070 (-)EnsemblpanPan2panpan1.1
CDH22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,424,567 - 33,492,162 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,425,303 - 33,492,292 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2432,950,778 - 33,018,325 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02434,134,235 - 34,201,817 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2434,134,218 - 34,202,243 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,393,032 - 33,459,862 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,508,812 - 33,575,667 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02434,047,822 - 34,114,743 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdh22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,388,473 - 191,450,180 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365146,841,462 - 6,932,547 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365146,841,462 - 6,932,547 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,339,694 - 48,413,799 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11748,339,683 - 48,471,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,984,767 - 54,059,180 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDH22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1217,573,244 - 17,709,470 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl217,631,664 - 17,708,309 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605066,209,735 - 66,344,425 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247908,369,964 - 8,438,683 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247908,369,972 - 8,437,595 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cdh22
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15152,726,833 - 152,850,017 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:158
Count of miRNA genes:109
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000025150
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3166376089177728348Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161799493176036425Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat

Markers in Region
D3Got145  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23154,014,561 - 154,014,798 (+)MAPPERmRatBN7.2
Rnor_6.03161,803,373 - 161,803,609NCBIRnor6.0
Rnor_5.03167,988,278 - 167,988,514UniSTSRnor5.0
RGSC_v3.43156,319,513 - 156,319,748RGDRGSC3.4
RGSC_v3.43156,319,512 - 156,319,748UniSTSRGSC3.4
Celera3152,613,763 - 152,613,999UniSTS
RGSC_v3.13156,225,549 - 156,225,784RGD
RH 3.4 Map31459.2UniSTS
RH 3.4 Map31459.2RGD
RH 2.0 Map3991.0RGD
Cytogenetic Map3q42UniSTS
D3Got152  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23154,070,095 - 154,070,327 (+)MAPPERmRatBN7.2
Rnor_6.03162,012,527 - 162,012,758NCBIRnor6.0
Rnor_6.03161,858,907 - 161,859,138NCBIRnor6.0
Rnor_5.03168,194,776 - 168,195,007UniSTSRnor5.0
Rnor_5.03168,043,812 - 168,044,043UniSTSRnor5.0
RGSC_v3.43156,375,045 - 156,375,277RGDRGSC3.4
RGSC_v3.43156,375,046 - 156,375,277UniSTSRGSC3.4
Celera3152,669,273 - 152,669,504UniSTS
RGSC_v3.13156,281,082 - 156,281,313RGD
RH 3.4 Map31435.0RGD
RH 3.4 Map31435.0UniSTS
RH 2.0 Map3991.0RGD
Cytogenetic Map3q42UniSTS
AA963524  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83174,431,735 - 174,431,899 (+)Marker Load Pipeline
mRatBN7.23154,012,433 - 154,012,597 (+)MAPPERmRatBN7.2
Rnor_6.03161,801,245 - 161,801,408NCBIRnor6.0
Rnor_5.03167,986,150 - 167,986,313UniSTSRnor5.0
RGSC_v3.43156,317,384 - 156,317,547UniSTSRGSC3.4
Celera3152,611,635 - 152,611,798UniSTS
RH 3.4 Map31431.1UniSTS
Cytogenetic Map3q42UniSTS
RH127321  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23154,024,874 - 154,025,054 (+)MAPPERmRatBN7.2
Rnor_6.03161,813,687 - 161,813,866NCBIRnor6.0
Rnor_5.03167,998,592 - 167,998,771UniSTSRnor5.0
RGSC_v3.43156,329,826 - 156,330,005UniSTSRGSC3.4
Celera3152,624,077 - 152,624,256UniSTS
Cytogenetic Map3q42UniSTS
AW524509  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,851,121 - 153,851,223 (+)MAPPERmRatBN7.2
Rnor_6.03161,580,553 - 161,580,654NCBIRnor6.0
Rnor_5.03167,765,433 - 167,765,534UniSTSRnor5.0
RGSC_v3.43156,160,563 - 156,160,664UniSTSRGSC3.4
Celera3152,455,517 - 152,455,618UniSTS
RH 3.4 Map31431.0UniSTS
Cytogenetic Map3q42UniSTS
BF389765  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23154,038,965 - 154,039,148 (+)MAPPERmRatBN7.2
Rnor_6.03161,981,397 - 161,981,579NCBIRnor6.0
Rnor_6.03161,827,776 - 161,827,958NCBIRnor6.0
Rnor_5.03168,163,646 - 168,163,828UniSTSRnor5.0
Rnor_5.03168,012,681 - 168,012,863UniSTSRnor5.0
RGSC_v3.43156,343,915 - 156,344,097UniSTSRGSC3.4
Celera3152,638,150 - 152,638,332UniSTS
RH 3.4 Map31429.7UniSTS
Cytogenetic Map3q42UniSTS
BE108444  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,902,746 - 153,902,911 (+)MAPPERmRatBN7.2
Rnor_6.03161,905,502 - 161,905,666NCBIRnor6.0
Rnor_5.03168,087,751 - 168,087,915UniSTSRnor5.0
RGSC_v3.43156,208,625 - 156,208,789UniSTSRGSC3.4
Celera3152,504,214 - 152,504,378UniSTS
RH 3.4 Map31431.0UniSTS
Cytogenetic Map3q42UniSTS
AA859271  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23154,024,871 - 154,025,061 (+)MAPPERmRatBN7.2
Rnor_6.03161,813,684 - 161,813,873NCBIRnor6.0
Rnor_5.03167,998,589 - 167,998,778UniSTSRnor5.0
RGSC_v3.43156,329,823 - 156,330,012UniSTSRGSC3.4
Celera3152,624,074 - 152,624,263UniSTS
RH 3.4 Map31431.1UniSTS
Cytogenetic Map3q42UniSTS
UniSTS:224287  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,868,650 - 153,868,814 (+)MAPPERmRatBN7.2
Rnor_6.03161,869,106 - 161,869,269NCBIRnor6.0
Rnor_6.03161,678,213 - 161,678,376NCBIRnor6.0
Rnor_5.03167,863,118 - 167,863,281UniSTSRnor5.0
Rnor_5.03168,054,011 - 168,054,174UniSTSRnor5.0
RGSC_v3.43156,174,530 - 156,174,693UniSTSRGSC3.4
Celera3152,470,521 - 152,470,684UniSTS
Cytogenetic Map3q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 4 66 156 56 55 24 29 24 6 226 124 8 129 60 85 31 22 22

Sequence


Ensembl Acc Id: ENSRNOT00000025150   ⟹   ENSRNOP00000025150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3174,264,869 - 174,390,142 (-)Ensembl
mRatBN7.2 Ensembl3153,845,787 - 153,970,588 (-)Ensembl
Rnor_6.0 Ensembl3161,575,631 - 161,917,285 (-)Ensembl
RefSeq Acc Id: NM_019161   ⟹   NP_062034
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,264,869 - 174,389,892 (-)NCBI
mRatBN7.23153,845,563 - 153,970,588 (-)NCBI
Rnor_6.03161,574,993 - 161,970,872 (-)NCBI
Rnor_5.03167,759,873 - 168,153,365 (-)NCBI
RGSC_v3.43156,155,004 - 156,275,540 (-)RGD
Celera3152,449,958 - 152,516,313 (-)RGD
Sequence:
RefSeq Acc Id: XM_039104424   ⟹   XP_038960352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,264,869 - 174,335,226 (-)NCBI
mRatBN7.23153,845,563 - 153,915,856 (-)NCBI
RefSeq Acc Id: XM_039104425   ⟹   XP_038960353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,264,869 - 174,323,693 (-)NCBI
mRatBN7.23153,845,563 - 153,904,411 (-)NCBI
RefSeq Acc Id: XM_039104426   ⟹   XP_038960354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,264,869 - 174,295,253 (-)NCBI
mRatBN7.23153,845,563 - 153,880,248 (-)NCBI
RefSeq Acc Id: XR_005501800
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,277,336 - 174,389,940 (-)NCBI
mRatBN7.23153,858,030 - 153,970,630 (-)NCBI
RefSeq Acc Id: NP_062034   ⟸   NM_019161
- Peptide Label: precursor
- UniProtKB: Q63561 (UniProtKB/Swiss-Prot),   Q63315 (UniProtKB/Swiss-Prot),   A6JXE3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025150   ⟸   ENSRNOT00000025150
RefSeq Acc Id: XP_038960352   ⟸   XM_039104424
- Peptide Label: isoform X1
- UniProtKB: Q63315 (UniProtKB/Swiss-Prot),   Q63561 (UniProtKB/Swiss-Prot),   A6JXE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960353   ⟸   XM_039104425
- Peptide Label: isoform X2
- UniProtKB: A6JXE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960354   ⟸   XM_039104426
- Peptide Label: isoform X3
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63315-F1-model_v2 AlphaFold Q63315 1-813 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692676
Promoter ID:EPDNEW_R3200
Type:multiple initiation site
Name:Cdh22_1
Description:cadherin 22
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03161,917,253 - 161,917,313EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2321 AgrOrtholog
BioCyc Gene G2FUF-46809 BioCyc
Ensembl Genes ENSRNOG00000018557 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000025150 ENTREZGENE
  ENSRNOT00000025150.7 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.900.10 UniProtKB/Swiss-Prot
  Cadherins UniProtKB/Swiss-Prot
InterPro Cadherin UniProtKB/Swiss-Prot
  Cadherin-like_dom UniProtKB/Swiss-Prot
  Cadherin-like_sf UniProtKB/Swiss-Prot
  Cadherin_CS UniProtKB/Swiss-Prot
  Cadherin_cytoplasmic-dom UniProtKB/Swiss-Prot
  Catenin_binding_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:29182 UniProtKB/Swiss-Prot
NCBI Gene 29182 ENTREZGENE
PANTHER CADHERIN-22 UniProtKB/Swiss-Prot
  PTHR24027 UniProtKB/Swiss-Prot
Pfam Cadherin UniProtKB/Swiss-Prot
  Cadherin_C UniProtKB/Swiss-Prot
PhenoGen Cdh22 PhenoGen
PRINTS CADHERIN UniProtKB/Swiss-Prot
PROSITE CADHERIN_1 UniProtKB/Swiss-Prot
  CADHERIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018557 RatGTEx
SMART SM00112 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot
TIGR TC228999
  TC229000
UniProt A6JXE3 ENTREZGENE, UniProtKB/TrEMBL
  A6JXE4 ENTREZGENE, UniProtKB/TrEMBL
  CAD22_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q63561 ENTREZGENE
UniProt Secondary Q63561 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Cdh22  cadherin 22      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed preferentially in pituitary gland and brain 69804