Etfrf1 (electron transfer flavoprotein regulatory factor 1) - Rat Genome Database

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Gene: Etfrf1 (electron transfer flavoprotein regulatory factor 1) Rattus norvegicus
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Symbol: Etfrf1
Name: electron transfer flavoprotein regulatory factor 1
RGD ID: 2320673
Description: Predicted to enable enzyme inhibitor activity. Predicted to be involved in negative regulation of oxidative phosphorylation. Predicted to be active in mitochondrion. Orthologous to human ETFRF1 (electron transfer flavoprotein regulatory factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ghiso; LOC100361188; LYR motif containing 5; LYR motif-containing protein 5; Lyrm5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84179,910,651 - 179,916,095 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4179,910,914 - 179,916,095 (+)EnsemblGRCr8
mRatBN7.24178,179,814 - 178,188,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4178,180,077 - 178,185,258 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4184,480,939 - 184,486,119 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04180,265,439 - 180,270,619 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04178,885,860 - 178,891,040 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04179,476,996 - 179,482,398 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,481,263 - 179,481,603 (+)Ensemblrn6Rnor6.0
Rnor_5.04243,658,384 - 243,664,740 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44182,859,926 - 182,865,036 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4166,699,235 - 166,704,636 (+)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:27499296  


Genomics

Comparative Map Data
Etfrf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84179,910,651 - 179,916,095 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4179,910,914 - 179,916,095 (+)EnsemblGRCr8
mRatBN7.24178,179,814 - 178,188,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4178,180,077 - 178,185,258 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4184,480,939 - 184,486,119 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04180,265,439 - 180,270,619 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04178,885,860 - 178,891,040 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04179,476,996 - 179,482,398 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,481,263 - 179,481,603 (+)Ensemblrn6Rnor6.0
Rnor_5.04243,658,384 - 243,664,740 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44182,859,926 - 182,865,036 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4166,699,235 - 166,704,636 (+)NCBICelera
Cytogenetic Map4q44NCBI
ETFRF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,195,237 - 25,205,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,194,775 - 25,209,645 (+)Ensemblhg38GRCh38
GRCh371225,348,171 - 25,358,077 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361225,239,417 - 25,249,216 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1230,495,105 - 30,504,913 (+)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1225,118,871 - 25,128,664 (+)NCBIHuRef
CHM1_11225,313,295 - 25,323,105 (+)NCBICHM1_1
T2T-CHM13v2.01225,066,455 - 25,076,393 (+)NCBIT2T-CHM13v2.0
Etfrf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396145,156,860 - 145,162,891 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6145,156,860 - 145,162,665 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386145,211,134 - 145,217,368 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6145,211,134 - 145,216,939 (+)Ensemblmm10GRCm38
MGSCv376145,159,654 - 145,165,062 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366145,168,315 - 145,174,098 (+)NCBIMGSCv36mm8
Celera6148,285,421 - 148,290,828 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.37NCBI
Etfrf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541320,293,398 - 20,293,738 (+)Ensembl
ChiLan1.0NW_00495541320,287,287 - 20,294,430 (+)NCBIChiLan1.0ChiLan1.0
ETFRF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21071,611,798 - 71,620,914 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11271,608,194 - 71,617,290 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01261,108,760 - 61,117,849 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11263,724,570 - 63,733,659 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1263,720,327 - 63,733,659 (-)EnsemblpanPan2panpan1.1
ETFRF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12722,296,949 - 22,303,772 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2722,297,418 - 22,303,221 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2724,071,274 - 24,078,100 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02722,495,680 - 22,502,504 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2722,496,149 - 22,501,952 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12722,310,893 - 22,317,716 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02722,329,749 - 22,336,543 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02724,238,203 - 24,245,004 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Etfrf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494584,191,385 - 84,200,331 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365482,114,831 - 2,115,174 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365482,114,271 - 2,123,187 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETFRF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl548,545,565 - 48,555,738 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1548,549,475 - 48,555,589 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2552,270,373 - 52,276,359 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ETFRF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11124,962,053 - 24,974,431 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1124,962,087 - 24,962,442 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606910,162,989 - 10,173,756 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Etfrf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475213,847,231 - 13,855,273 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Etfrf1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v162,972,333 - 2,979,057 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Etfrf1
52 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:337
Count of miRNA genes:200
Interacting mature miRNAs:233
Transcripts:ENSRNOT00000021284
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4176806581181925369Rat

Markers in Region
AA943468  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24178,180,185 - 178,180,307 (+)MAPPERmRatBN7.2
Rnor_6.04179,477,326 - 179,477,447NCBIRnor6.0
Rnor_5.04243,658,630 - 243,658,751UniSTSRnor5.0
RGSC_v3.44182,859,960 - 182,860,081UniSTSRGSC3.4
Celera4166,699,565 - 166,699,686UniSTS
RH 3.4 Map41077.3UniSTS
Cytogenetic Map4q44UniSTS
AI176545  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24178,185,022 - 178,185,177 (+)MAPPERmRatBN7.2
Rnor_6.04179,482,163 - 179,482,317NCBIRnor6.0
Rnor_5.04243,663,467 - 243,663,621UniSTSRnor5.0
RGSC_v3.44182,864,797 - 182,864,951UniSTSRGSC3.4
Celera4166,704,401 - 166,704,555UniSTS
RH 3.4 Map41077.9UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021284   ⟹   ENSRNOP00000021284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4179,481,263 - 179,481,603 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101701   ⟹   ENSRNOP00000078423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4179,910,914 - 179,916,095 (+)Ensembl
mRatBN7.2 Ensembl4178,180,077 - 178,185,258 (+)Ensembl
RefSeq Acc Id: NM_001399056   ⟹   NP_001385985
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,910,914 - 179,916,095 (+)NCBI
mRatBN7.24178,180,077 - 178,185,258 (+)NCBI
RefSeq Acc Id: NM_001399057   ⟹   NP_001385986
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,910,914 - 179,916,095 (+)NCBI
mRatBN7.24178,180,077 - 178,185,258 (+)NCBI
RefSeq Acc Id: XM_006237673   ⟹   XP_006237735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,910,651 - 179,916,095 (+)NCBI
mRatBN7.24178,179,814 - 178,188,630 (+)NCBI
Rnor_6.04179,476,996 - 179,482,398 (+)NCBI
Rnor_5.04243,658,384 - 243,664,740 (+)NCBI
Sequence:
RefSeq Acc Id: XP_006237735   ⟸   XM_006237673
- Peptide Label: isoform X1
- UniProtKB: D4AD58 (UniProtKB/TrEMBL),   A6IMZ9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021284   ⟸   ENSRNOT00000021284
Ensembl Acc Id: ENSRNOP00000078423   ⟸   ENSRNOT00000101701
RefSeq Acc Id: NP_001385985   ⟸   NM_001399056
- UniProtKB: D4AD58 (UniProtKB/TrEMBL),   A6IMZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385986   ⟸   NM_001399057
- UniProtKB: D4AD58 (UniProtKB/TrEMBL),   A6IMZ9 (UniProtKB/TrEMBL)
Protein Domains
Complex 1 LYR protein

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AD58-F1-model_v2 AlphaFold D4AD58 1-86 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2320673 AgrOrtholog
BioCyc Gene G2FUF-42458 BioCyc
Ensembl Genes ENSRNOG00000015848 Ensembl
  ENSRNOG00000063524 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000101701 ENTREZGENE
  ENSRNOT00000101701.2 UniProtKB/TrEMBL
InterPro Complex1_LYR UniProtKB/TrEMBL
  Complex1_LYR_ETFRF1_LYRM5 UniProtKB/TrEMBL
  ETF_Regulatory_Factor_1 UniProtKB/TrEMBL
NCBI Gene 100361188 ENTREZGENE
PANTHER ELECTRON TRANSFER FLAVOPROTEIN REGULATORY FACTOR 1 UniProtKB/TrEMBL
  GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATED UniProtKB/TrEMBL
Pfam Complex1_LYR UniProtKB/TrEMBL
PhenoGen Etfrf1 PhenoGen
RatGTEx ENSRNOG00000015848 RatGTEx
  ENSRNOG00000063524 RatGTEx
UniProt A6IMZ9 ENTREZGENE, UniProtKB/TrEMBL
  D4AD58 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Etfrf1  electron transfer flavoprotein regulatory factor 1  Etfrf1  electron transfer flavoprotein regulatory factor 1  Data merged from RGD:149736212 737654 PROVISIONAL
2021-08-09 Etfrf1  electron transfer flavoprotein regulatory factor 1      Symbol and Name status set to provisional 45752 PROVISIONAL
2016-08-29 Etfrf1  electron transfer flavoprotein regulatory factor 1  Lyrm5  LYR motif containing 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-08-10 Lyrm5  LYR motif containing 5  LOC100361188  ghiso  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100361188  ghiso      Symbol and Name status set to provisional 70820 PROVISIONAL