Rps26l6 (ribosomal protein S26 like 6) - Rat Genome Database

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Gene: Rps26l6 (ribosomal protein S26 like 6) Rattus norvegicus
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Symbol: Rps26l6
Name: ribosomal protein S26 like 6
RGD ID: 2319518
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN cytosolic ribosome (inferred); ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S26-like; LOC100361756; ribosomal protein S26 like 56; ribosomal protein S26-like; small ribosomal subunit protein eS26-like
Latest Assembly: GRCr8 - GRCr8 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X72,416,099 - 72,416,435 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX72,416,066 - 72,416,437 (+)EnsemblGRCr8
GRCr8 EnsemblX112,618,781 - 112,785,748 (-)EnsemblGRCr8
mRatBN7.2X68,350,312 - 68,350,725 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX107,822,019 - 107,823,594 (+)EnsemblmRatBN7.2
Rnor_6.0X74,188,378 - 74,188,724 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX74,188,381 - 74,188,723 (+)Ensemblrn6Rnor6.0
Rnor_5.0X74,996,933 - 74,997,279 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X91,308,979 - 91,309,317 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX69,717,907 - 69,718,253 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps26l6
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 11 48 117 89 89 58 51 58 5 248 118 1 106 49 57 31 3 3

Sequence


Ensembl Acc Id: ENSRNOT00000051134   ⟹   ENSRNOP00000048116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX72,416,066 - 72,416,437 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX112,618,781 - 112,785,748 (-)Ensembl
mRatBN7.2 EnsemblX107,822,019 - 107,823,594 (+)Ensembl
Rnor_6.0 EnsemblX74,188,381 - 74,188,723 (+)Ensembl
RefSeq Acc Id: XM_002730273   ⟹   XP_002730319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X72,416,099 - 72,416,435 (+)NCBI
mRatBN7.2X68,350,312 - 68,350,725 (+)NCBI
Rnor_6.0X74,188,378 - 74,188,724 (+)NCBI
Rnor_5.0X74,996,933 - 74,997,279 (+)NCBI
RGSC_v3.4X91,308,979 - 91,309,317 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_002730319 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048116
  ENSRNOP00000048116.2
  ENSRNOP00000095087.2
RefSeq Acc Id: XP_002730319   ⟸   XM_002730273
- UniProtKB: D3Z8D7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048116   ⟸   ENSRNOT00000051134

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2030 BioCyc
Ensembl Genes ENSRNOG00000029512 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000051310 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051134 ENTREZGENE
  ENSRNOT00000051134.3 UniProtKB/TrEMBL
  ENSRNOT00000076781.3 UniProtKB/TrEMBL
Gene3D-CATH Ribosomal protein S26e UniProtKB/TrEMBL
InterPro Ribosomal_eS26 UniProtKB/TrEMBL
  Ribosomal_eS26_CS UniProtKB/TrEMBL
  Ribosomal_eS26_sf UniProtKB/TrEMBL
NCBI Gene 100361756 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S26 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S26 UniProtKB/TrEMBL
Pfam Ribosomal_S26e UniProtKB/TrEMBL
PhenoGen Rps26l6 PhenoGen
PROSITE RIBOSOMAL_S26E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029512 RatGTEx
  ENSRNOG00000051310 RatGTEx
UniProt A0A8I6ASV1_RAT UniProtKB/TrEMBL
  D3Z8D7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-19 Rps26l6  ribosomal protein S26 like 6  Rps26l6  ribosomal protein S26 like 56  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rps26l6  ribosomal protein S26 like 56  LOC100361756  ribosomal protein S26-like  Symbol and Name Changed 1299863 APPROVED
2010-05-05 LOC100361756  ribosomal protein S26-like      Symbol and Name status set to provisional 70820 PROVISIONAL