Micos10l1 (mitochondrial contact site and cristae organizing system subunit 10 like 1) - Rat Genome Database

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Gene: Micos10l1 (mitochondrial contact site and cristae organizing system subunit 10 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Micos10l1
Name: mitochondrial contact site and cristae organizing system subunit 10 like 1
RGD ID: 2319136
Description: Predicted to be located in mitochondrial inner membrane. Predicted to be part of MICOS complex. Predicted to be active in mitochondrion. Orthologous to human MICOS10 (mitochondrial contact site and cristae organizing system subunit 10).
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC100361944; LOC100361944; MICOS complex subunit Mic10-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8697,101,080 - 97,101,484 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl697,101,133 - 97,101,363 (+)EnsemblGRCr8
mRatBN7.2691,365,250 - 91,365,507 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl691,365,250 - 91,365,480 (+)EnsemblmRatBN7.2
Rnor_6.0695,558,741 - 95,559,037 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl695,558,782 - 95,559,009 (+)Ensemblrn6Rnor6.0
Rnor_5.06104,996,568 - 104,996,963 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4695,082,684 - 95,082,914 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera689,826,075 - 89,826,371 (+)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000042226
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 3 8 24 10 8 5 13 5 1 58 27 2 25 15 16 3 10 10

Sequence


Ensembl Acc Id: ENSRNOT00000042226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl697,101,133 - 97,101,363 (+)Ensembl
mRatBN7.2 Ensembl691,365,250 - 91,365,480 (+)Ensembl
Rnor_6.0 Ensembl695,558,782 - 95,559,009 (+)Ensembl
RefSeq Acc Id: XM_006240216   ⟹   XP_006240278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,101,080 - 97,101,484 (+)NCBI
mRatBN7.2691,365,250 - 91,365,507 (+)NCBI
Rnor_6.0695,558,741 - 95,559,037 (+)NCBI
Rnor_5.06104,996,568 - 104,996,963 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006240278 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_006240278   ⟸   XM_006240216
- UniProtKB: A0A8I6AGY6 (UniProtKB/TrEMBL)
- Sequence:

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2319136 AgrOrtholog
BioCyc Gene G2FUF-37138 BioCyc
Ensembl Genes ENSRNOG00000029172 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000042226 ENTREZGENE
NCBI Gene 100361944 ENTREZGENE
PhenoGen Micos10l1 PhenoGen
RatGTEx ENSRNOG00000029172 RatGTEx
UniProt A0A8I6AGY6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Micos10l1  mitochondrial contact site and cristae organizing system subunit 10 like 1  LOC100361944  hypothetical protein LOC100361944  Symbol and Name Changed 1299863 APPROVED
2010-05-05 LOC100361944  hypothetical protein LOC100361944      Symbol and Name status set to provisional 70820 PROVISIONAL