Eif2s3y (eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Eif2s3y (eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked) Rattus norvegicus
Analyze
Symbol: Eif2s3y
Name: eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked
RGD ID: 2314438
Description: Predicted to enable translation initiation factor activity. Predicted to contribute to tRNA binding activity. Predicted to be involved in formation of translation preinitiation complex. Predicted to act upstream of or within positive regulation of male gonad development and spermatogenesis. Predicted to be part of eukaryotic translation initiation factor 2 complex. Human ortholog(s) of this gene implicated in MEHMO syndrome. Orthologous to several human genes including EIF2S3 (eukaryotic translation initiation factor 2 subunit gamma); INTERACTS WITH tetrachloromethane; 17beta-estradiol (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: eIF-2-gamma Y; eukaryotic translation initiation factor 2 subunit 3, Y-linked; eukaryotic translation initiation factor 2 subunit gamma, Y-linked; eukaryotic translation initiation factor 2, subunit 3 gamma; MGC187904
RGD Orthologs
Human
Mouse
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8Y944,653 - 964,303 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblY944,618 - 964,778 (+)EnsemblGRCr8
mRatBN7.2Y869,654 - 889,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblY869,689 - 889,340 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxY563,276 - 582,913 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0Y672,727 - 692,364 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0Y1,312,374 - 1,332,011 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0Y914,062 - 933,699 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblY914,045 - 933,699 (+)Ensemblrn6Rnor6.0
Rnor_5.02121,602,412 - 121,610,541 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera295,105,251 - 95,110,788 (-)NCBICelera
Cytogenetic MapYq11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:20333173   PMID:24759410   PMID:35352799  


Genomics

Comparative Map Data
Eif2s3y
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8Y944,653 - 964,303 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblY944,618 - 964,778 (+)EnsemblGRCr8
mRatBN7.2Y869,654 - 889,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblY869,689 - 889,340 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxY563,276 - 582,913 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0Y672,727 - 692,364 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0Y1,312,374 - 1,332,011 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0Y914,062 - 933,699 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblY914,045 - 933,699 (+)Ensemblrn6Rnor6.0
Rnor_5.02121,602,412 - 121,610,541 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera295,105,251 - 95,110,788 (-)NCBICelera
Cytogenetic MapYq11NCBI
EIF2S3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381210,505,890 - 10,523,135 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1210,505,602 - 10,523,135 (+)Ensemblhg38GRCh38
GRCh371210,658,489 - 10,675,734 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,549,649 - 10,552,520 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1215,804,929 - 15,807,573 (+)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1210,385,492 - 10,388,136 (+)NCBIHuRef
CHM1_11210,627,994 - 10,630,638 (+)NCBICHM1_1
T2T-CHM13v2.01210,377,306 - 10,394,552 (+)NCBIT2T-CHM13v2.0
Eif2s3y
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39Y1,010,562 - 1,049,136 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblY1,010,543 - 1,028,847 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38Y1,010,562 - 1,049,134 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblY1,010,543 - 1,028,847 (+)Ensemblmm10GRCm38
MGSCv37Y347,055 - 365,037 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36Y347,055 - 365,037 (+)NCBIMGSCv36mm8
CeleraY3,837,791 - 3,855,773 (+)NCBICelera
Cytogenetic MapYpterNCBI
EIF2S3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21015,968,177 - 15,974,926 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,964,934 - 15,972,318 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,529,977 - 10,532,133 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,796,930 - 10,813,685 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,796,985 - 10,813,243 (+)EnsemblpanPan2panpan1.1

Variants

.
Variants in Eif2s3y
43 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 13 11 105 207 83 86 58 123 58 16 415 265 9 191 81 50 28 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000088593   ⟹   ENSRNOP00000068958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblY944,618 - 964,778 (+)Ensembl
mRatBN7.2 EnsemblY869,689 - 889,340 (+)Ensembl
Rnor_6.0 EnsemblY914,045 - 933,699 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblY922,440 - 923,133 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104935   ⟹   ENSRNOP00000094242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblY869,689 - 887,025 (+)Ensembl
RefSeq Acc Id: NM_001167666   ⟹   NP_001161138
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8Y944,653 - 964,303 (+)NCBI
mRatBN7.2Y869,689 - 889,341 (+)NCBI
Rnor_6.0Y914,062 - 933,699 (+)NCBI
RGSC_v3.42102,222,332 - 102,223,486 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001161138 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58737 (Get FASTA)   NCBI Sequence Viewer  
  ACX55123 (Get FASTA)   NCBI Sequence Viewer  
  ACX55124 (Get FASTA)   NCBI Sequence Viewer  
  C9WPN6 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000068958
  ENSRNOP00000068958.1
GenBank Protein JAC06680 (Get FASTA)   NCBI Sequence Viewer  
  XRQ54477 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001161138   ⟸   NM_001167666
- UniProtKB: C9WPN7 (UniProtKB/Swiss-Prot),   A0A0G2JU42 (UniProtKB/Swiss-Prot),   A0A096MIV4 (UniProtKB/Swiss-Prot),   W8CEN7 (UniProtKB/Swiss-Prot),   C9WPN6 (UniProtKB/Swiss-Prot),   A0A8L2R4R9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068958   ⟸   ENSRNOT00000088593
Ensembl Acc Id: ENSRNOP00000094242   ⟸   ENSRNOT00000104935
Protein Domains
tr-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-C9WPN6-F1-model_v2 AlphaFold C9WPN6 1-472 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702077
Promoter ID:EPDNEW_R12601
Type:multiple initiation site
Name:Eif2s3y_1
Description:eukaryotic translation initiation factor 2, subunit 3, structuralgene Y-linked
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0Y914,045 - 914,105EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2314438 AgrOrtholog
BioCyc Gene G2FUF-576 BioCyc
Ensembl Genes ENSRNOG00000060048 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000088593 ENTREZGENE
  ENSRNOT00000088593.3 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
  Translation factors UniProtKB/Swiss-Prot
InterPro EFTu-like_2 UniProtKB/Swiss-Prot
  eIF2G UniProtKB/Swiss-Prot
  eIF2g_dom_2 UniProtKB/Swiss-Prot
  eIF2g_GTP-bd UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  TF_GTP-bd_dom UniProtKB/Swiss-Prot
  TIF2_gsu_C UniProtKB/Swiss-Prot
  Transl_B-barrel_sf UniProtKB/Swiss-Prot
  Transl_elong_EF1A/Init_IF2_C UniProtKB/Swiss-Prot
KEGG Report rno:100312984 UniProtKB/Swiss-Prot
NCBI Gene 100312984 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER UniProtKB/Swiss-Prot
  EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3, Y-LINKED UniProtKB/Swiss-Prot
Pfam eIF2_C UniProtKB/Swiss-Prot
  GTP_EFTU UniProtKB/Swiss-Prot
  GTP_EFTU_D2 UniProtKB/Swiss-Prot
PhenoGen Eif2s3y PhenoGen
PRINTS ELONGATNFCT UniProtKB/Swiss-Prot
PROSITE G_TR_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000060048 RatGTEx
Superfamily-SCOP SSF50447 UniProtKB/Swiss-Prot
  SSF50465 UniProtKB/Swiss-Prot
  SSF52540 UniProtKB/Swiss-Prot
UniProt A0A096MIV4 ENTREZGENE
  A0A0G2JU42 ENTREZGENE
  A0A8L2R4R9 ENTREZGENE, UniProtKB/TrEMBL
  C9WPN6 ENTREZGENE
  C9WPN7 ENTREZGENE
  IF2H_RAT UniProtKB/Swiss-Prot
  W8CEN7 ENTREZGENE
UniProt Secondary A0A096MIV4 UniProtKB/Swiss-Prot
  A0A0G2JU42 UniProtKB/Swiss-Prot
  C9WPN7 UniProtKB/Swiss-Prot
  W8CEN7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-11-13 Eif2s3y  eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked      Symbol and Name status set to provisional 70820 PROVISIONAL