Car13l1 (carbonic anhydrase 13 like 1) - Rat Genome Database

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Gene: Car13l1 (carbonic anhydrase 13 like 1) Rattus norvegicus
Analyze
Symbol: Car13l1 (Ensembl: AABR07063126.1)
Name: carbonic anhydrase 13 like 1
RGD ID: 1597710
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: carbonic anhydrase 13-like; LOC685173; similar to carbonic anhydrase 13
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr866,361,667 - 6,369,693 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl66,368,713 - 6,369,435 (+)EnsemblGRCr8
mRatBN7.26615,673 - 623,476 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6622,719 - 623,441 (+)EnsemblmRatBN7.2
Rnor_6.0618,708,775 - 18,717,266 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0628,607,037 - 28,611,557 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera6437,652 - 445,420 (+)NCBICelera
Cytogenetic Map6q11NCBI
JBrowse:




References

Genomics

Variants

.
Variants in Car13l1
42 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6125740059Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6120510098Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
4 3 2 2 11 5 9 2 1 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000003371   ⟹   ENSRNOP00000090831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl66,368,713 - 6,369,435 (+)Ensembl
mRatBN7.2 Ensembl6622,719 - 623,441 (+)Ensembl
RefSeq Acc Id: XM_039078103   ⟹   XP_038934031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr866,361,667 - 6,369,693 (+)NCBI
mRatBN7.26615,673 - 623,476 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038934031 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038934031   ⟸   XM_039078103
- UniProtKB: A0A8I6AP85 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090831   ⟸   ENSRNOT00000003371

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38815 BioCyc
Ensembl Genes ENSRNOG00000002495 Ensembl
NCBI Gene 685173 ENTREZGENE
PhenoGen Car13l1 PhenoGen
RatGTEx ENSRNOG00000002495 RatGTEx
UniProt A0A8I6AP85 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Car13l1  carbonic anhydrase 13 like 1  LOC685173  similar to carbonic anhydrase 13  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC685173  similar to carbonic anhydrase 13      Symbol and Name status set to provisional 70820 PROVISIONAL