Stx19 (syntaxin 19) - Rat Genome Database

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Gene: Stx19 (syntaxin 19) Rattus norvegicus
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Symbol: Stx19
Name: syntaxin 19
RGD ID: 1597703
Description: Predicted to enable SNAP receptor activity. Predicted to be involved in intracellular protein transport; membrane fusion; and vesicle-mediated transport. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human STX19 (syntaxin 19); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC685180; similar to syntaxin 19; syntaxin-19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81113,619,436 - 13,624,634 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1113,593,134 - 13,629,410 (+)EnsemblGRCr8
mRatBN7.211172,855 - 178,053 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl11171,395 - 179,191 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx118,769,008 - 8,774,204 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0111,562,267 - 1,567,463 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.011667,048 - 672,244 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.071,145,002 - 1,149,978 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.071,133,989 - 1,138,965 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera13182,296 - 187,494 (+)NCBICelera
Cytogenetic Map11p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Stx19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81113,619,436 - 13,624,634 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1113,593,134 - 13,629,410 (+)EnsemblGRCr8
mRatBN7.211172,855 - 178,053 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl11171,395 - 179,191 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx118,769,008 - 8,774,204 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0111,562,267 - 1,567,463 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.011667,048 - 672,244 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.071,145,002 - 1,149,978 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.071,133,989 - 1,138,965 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera13182,296 - 187,494 (+)NCBICelera
Cytogenetic Map11p12NCBI
STX19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38394,014,365 - 94,028,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl394,012,043 - 94,028,654 (-)Ensemblhg38GRCh38
GRCh37393,733,209 - 93,747,441 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36395,215,903 - 95,230,144 (-)NCBIBuild 36Build 36hg18NCBI36
Celera392,116,939 - 92,131,179 (-)NCBICelera
Cytogenetic Map3q11.2NCBI
HuRef391,095,915 - 91,110,158 (-)NCBIHuRef
CHM1_1393,696,301 - 93,710,542 (-)NCBICHM1_1
T2T-CHM13v2.0396,712,494 - 96,726,726 (-)NCBIT2T-CHM13v2.0
Stx19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391662,635,039 - 62,643,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1662,635,039 - 62,644,709 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381662,814,676 - 62,822,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1662,814,676 - 62,824,346 (+)Ensemblmm10GRCm38
MGSCv371662,814,502 - 62,822,548 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361662,756,932 - 62,764,978 (+)NCBIMGSCv36mm8
Celera1663,123,377 - 63,131,418 (+)NCBICelera
Cytogenetic Map16C1.3NCBI
cM Map1636.43NCBI
Stx19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554073,397,284 - 3,437,421 (+)Ensembl
ChiLan1.0NW_0049554073,397,284 - 3,437,421 (+)NCBIChiLan1.0ChiLan1.0
STX19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2291,925,852 - 91,974,898 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1391,929,934 - 91,945,006 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0391,079,351 - 91,093,741 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1397,759,197 - 97,773,498 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl397,759,213 - 97,760,097 (-)EnsemblpanPan2panpan1.1
STX19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1331,726,019 - 1,736,949 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl331,726,695 - 1,727,579 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha331,903,226 - 1,916,301 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0331,822,874 - 1,835,972 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl331,826,083 - 1,826,967 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1331,731,883 - 1,744,958 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0331,767,183 - 1,780,253 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0331,992,040 - 2,005,119 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stx19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602155,368,450 - 155,369,359 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936666146,314 - 154,950 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936666145,946 - 147,292 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13165,867,924 - 165,874,123 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113165,858,563 - 165,872,678 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213176,541,458 - 176,557,579 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STX19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12286,673,139 - 86,688,288 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2286,673,654 - 86,691,972 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604179,994,530 - 80,009,021 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stx19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247896,744,858 - 6,756,127 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247896,740,514 - 6,757,694 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Stx19
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11214,621,283 - 214,626,675 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stx19
15 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11381815448818154Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat

Markers in Region
RH144230  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.211172,117 - 172,238 (+)MAPPERmRatBN7.2
Rnor_6.071,144,265 - 1,144,385NCBIRnor6.0
Rnor_5.071,133,252 - 1,133,372UniSTSRnor5.0
Celera13181,559 - 181,679UniSTS
Cytogenetic Map11q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 13 40 52 95 68 3 46 20 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000102767   ⟹   ENSRNOP00000097435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1113,617,968 - 13,627,151 (+)Ensembl
mRatBN7.2 Ensembl11171,395 - 179,191 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171744   ⟹   ENSRNOP00000110212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1113,593,134 - 13,629,410 (+)Ensembl
RefSeq Acc Id: NM_001109460   ⟹   NP_001102930
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81113,619,436 - 13,624,634 (+)NCBI
mRatBN7.211172,855 - 178,053 (+)NCBI
Rnor_6.071,145,002 - 1,149,978 (+)NCBI
Rnor_5.071,133,989 - 1,138,965 (+)NCBI
Celera13182,296 - 187,494 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001102930 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL83249 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000097435
  ENSRNOP00000097435.1
  ENSRNOP00000110212.1
RefSeq Acc Id: NP_001102930   ⟸   NM_001109460
- UniProtKB: A0A8I6ASN7 (UniProtKB/TrEMBL),   A6KSZ9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000097435   ⟸   ENSRNOT00000102767
Ensembl Acc Id: ENSRNOP00000110212   ⟸   ENSRNOT00000171744
Protein Domains
t-SNARE coiled-coil homology

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597703 AgrOrtholog
BioCyc Gene G2FUF-22337 BioCyc
Ensembl Genes ENSRNOG00000070368 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000102767 ENTREZGENE
  ENSRNOT00000102767.2 UniProtKB/TrEMBL
  ENSRNOT00000171744.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  1.20.58.70 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/TrEMBL
  Syntaxin_N UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
KEGG Report rno:685180 UniProtKB/TrEMBL
NCBI Gene 685180 ENTREZGENE
PANTHER PTHR19957 UniProtKB/TrEMBL
  PTHR19957:SF29 UniProtKB/TrEMBL
Pfam Syntaxin UniProtKB/TrEMBL
PhenoGen Stx19 PhenoGen
PROSITE SYNTAXIN UniProtKB/TrEMBL
  T_SNARE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000070368 RatGTEx
SMART t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/TrEMBL
UniProt A0A8I6ASN7 ENTREZGENE, UniProtKB/TrEMBL
  A6KSZ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Stx19  syntaxin 19  LOC685180  similar to syntaxin 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685180  similar to syntaxin 19      Symbol and Name status set to provisional 70820 PROVISIONAL