Sall4 (spalt-like transcription factor 4) - Rat Genome Database

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Gene: Sall4 (spalt-like transcription factor 4) Rattus norvegicus
Analyze
Symbol: Sall4
Name: spalt-like transcription factor 4
RGD ID: 1597672
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including chordate embryonic development; regulation of transcription by RNA polymerase II; and ventricular septum development. Predicted to be located in heterochromatin and nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Duane retraction syndrome; Duane-radial ray syndrome; Holt-Oram syndrome; IVIC syndrome; and ventricular septal defect. Orthologous to human SALL4 (spalt like transcription factor 4); INTERACTS WITH aflatoxin B1; azoxystrobin; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC686412; sal-like 4; sal-like 4 (Drosophila); sal-like protein 4; similar to sal-like 4 isoform a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83177,891,705 - 177,909,743 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3177,891,705 - 177,909,743 (-)EnsemblGRCr8
mRatBN7.23157,474,067 - 157,491,055 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3157,474,642 - 157,490,822 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd3175,962,662 - 175,980,652 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive3182,823,513 - 182,841,502 (-)NCBILyon_Normotensive
Lyon_Hypertensive3174,790,340 - 174,808,330 (-)NCBILyon_Hypertensive
F344_StmMcwi3155,686,971 - 155,704,963 (-)NCBIF344_StmMcwi
Rnor_6.03165,520,155 - 165,538,176 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3165,520,392 - 165,537,940 (-)Ensemblrn6Rnor6.0
Rnor_5.03171,656,504 - 171,674,423 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera3156,038,840 - 156,055,436 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
heterochromatin  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
protein-containing complex  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Duane radial ray syndrome (Okihiro syndrome) maps to 20q13 and results from mutations in SALL4, a new member of the SAL family. Al-Baradie R, etal., Am J Hum Genet. 2002 Nov;71(5):1195-9. Epub 2002 Oct 22.
2. Novel frameshift variant in gene SALL4 causing Okihiro syndrome. Alves LU, etal., Eur J Med Genet. 2016 Feb;59(2):80-5. doi: 10.1016/j.ejmg.2015.12.015. Epub 2016 Jan 11.
3. Sall1, sall2, and sall4 are required for neural tube closure in mice. Bohm J, etal., Am J Pathol. 2008 Nov;173(5):1455-63. doi: 10.2353/ajpath.2008.071039. Epub 2008 Sep 25.
4. SALL4 is a novel diagnostic marker for testicular germ cell tumors. Cao D, etal., Am J Surg Pathol. 2009 Jul;33(7):1065-77. doi: 10.1097/PAS.0b013e3181a13eef.
5. SALL4 is a novel sensitive and specific marker of ovarian primitive germ cell tumors and is particularly useful in distinguishing yolk sac tumor from clear cell carcinoma. Cao D, etal., Am J Surg Pathol. 2009 Jun;33(6):894-904. doi: 10.1097/PAS.0b013e318198177d.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. SALL4 is a marker of the embryonal subtype of hepatoblastoma. Gnemmi V, etal., Histopathology. 2013 Sep;63(3):425-8. doi: 10.1111/his.12187. Epub 2013 Jul 3.
8. Immunohistochemical expression of SALL4 in hepatocellular carcinoma, a potential pitfall in the differential diagnosis of yolk sac tumors. Gonzalez-Roibon N, etal., Hum Pathol. 2013 Jul;44(7):1293-9. doi: 10.1016/j.humpath.2012.10.017. Epub 2013 Jan 21.
9. Okihiro syndrome is caused by SALL4 mutations. Kohlhase J, etal., Hum Mol Genet. 2002 Nov 1;11(23):2979-87.
10. Mutations at the SALL4 locus on chromosome 20 result in a range of clinically overlapping phenotypes, including Okihiro syndrome, Holt-Oram syndrome, acro-renal-ocular syndrome, and patients previously reported to represent thalidomide embryopathy. Kohlhase J, etal., J Med Genet. 2003 Jul;40(7):473-8.
11. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
12. GOA pipeline RGD automated data pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Comprehensive gene review and curation RGD comprehensive gene curation
16. The murine homolog of SALL4, a causative gene in Okihiro syndrome, is essential for embryonic stem cell proliferation, and cooperates with Sall1 in anorectal, heart, brain and kidney development. Sakaki-Yumoto M, etal., Development. 2006 Aug;133(15):3005-13. doi: 10.1242/dev.02457. Epub 2006 Jun 21.
17. A family with features overlapping Okihiro syndrome, hemifacial microsomia and isolated Duane anomaly caused by a novel SALL4 mutation. Terhal P, etal., Am J Med Genet A. 2006 Feb 1;140(3):222-6.
18. Genetic variation of SAL-Like 4 (SALL4) in ventricular septal defect. Wang B, etal., Int J Cardiol. 2010 Nov 19;145(2):224-6. doi: 10.1016/j.ijcard.2009.05.067. Epub 2009 Jul 19.
19. A Sall4 mutant mouse model useful for studying the role of Sall4 in early embryonic development and organogenesis. Warren M, etal., Genesis. 2007 Jan;45(1):51-8.
20. Diversified clinical presentations associated with a novel sal-like 4 gene mutation in a Chinese pedigree with Duane retraction syndrome. Yang MM, etal., Mol Vis. 2013 May 6;19:986-94. Print 2013.
Additional References at PubMed
PMID:16380715   PMID:17060609   PMID:17295837   PMID:19796622   PMID:20720539   PMID:26523946  


Genomics

Comparative Map Data
Sall4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83177,891,705 - 177,909,743 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3177,891,705 - 177,909,743 (-)EnsemblGRCr8
mRatBN7.23157,474,067 - 157,491,055 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3157,474,642 - 157,490,822 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd3175,962,662 - 175,980,652 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive3182,823,513 - 182,841,502 (-)NCBILyon_Normotensive
Lyon_Hypertensive3174,790,340 - 174,808,330 (-)NCBILyon_Hypertensive
F344_StmMcwi3155,686,971 - 155,704,963 (-)NCBIF344_StmMcwi
Rnor_6.03165,520,155 - 165,538,176 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3165,520,392 - 165,537,940 (-)Ensemblrn6Rnor6.0
Rnor_5.03171,656,504 - 171,674,423 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera3156,038,840 - 156,055,436 (-)NCBICelera
Cytogenetic Map3q42NCBI
SALL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382051,782,331 - 51,802,521 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2051,782,331 - 51,802,521 (-)Ensemblhg38GRCh38
GRCh372050,398,870 - 50,419,060 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362049,833,988 - 49,852,421 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342049,833,991 - 49,852,421NCBI
Celera2047,105,283 - 47,123,757 (-)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2047,147,931 - 47,166,405 (-)NCBIHuRef
CHM1_12050,305,475 - 50,323,937 (-)NCBICHM1_1
T2T-CHM13v2.02053,553,791 - 53,573,978 (-)NCBIT2T-CHM13v2.0
Sall4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392168,590,252 - 168,609,121 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2168,590,252 - 168,609,863 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382168,748,332 - 168,767,201 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2168,748,332 - 168,767,943 (-)Ensemblmm10GRCm38
MGSCv372168,573,832 - 168,592,701 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362168,440,991 - 168,458,333 (-)NCBIMGSCv36mm8
Celera2174,694,286 - 174,713,507 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map288.99NCBI
Sall4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554456,824,770 - 6,842,187 (+)Ensembl
ChiLan1.0NW_0049554456,824,797 - 6,841,141 (+)NCBIChiLan1.0ChiLan1.0
SALL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22157,535,985 - 57,556,278 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12057,529,106 - 57,549,399 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02048,130,387 - 48,150,569 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12049,252,320 - 49,272,973 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2049,254,039 - 49,273,589 (-)EnsemblpanPan2panpan1.1
SALL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12437,941,498 - 37,959,713 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2437,940,034 - 38,037,287 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2437,180,959 - 37,200,584 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02438,651,355 - 38,669,523 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2438,649,920 - 38,749,658 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12437,887,041 - 37,905,946 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02438,020,086 - 38,039,234 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02438,565,716 - 38,585,336 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sall4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640187,831,936 - 187,849,998 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365143,285,531 - 3,303,644 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365143,285,778 - 3,302,179 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SALL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1753,084,310 - 53,103,190 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11753,082,610 - 53,103,023 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21759,526,086 - 59,533,416 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SALL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1212,179,721 - 12,199,629 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl212,182,357 - 12,199,321 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605060,576,222 - 60,593,578 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sall4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247904,162,454 - 4,170,923 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247904,153,157 - 4,170,813 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Sall4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15149,232,900 - 149,248,859 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:30
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000070964, ENSRNOT00000071119
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat

Markers in Region
UniSTS:234614  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23157,474,128 - 157,474,212 (+)MAPPERmRatBN7.2
Rnor_6.03165,519,879 - 165,519,962NCBIRnor6.0
Rnor_5.03171,656,228 - 171,656,311UniSTSRnor5.0
Celera3156,038,564 - 156,038,647UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 61 95 71 67 56 3 56 5 199 86 8 78 34 84 11 4 4

Sequence


Ensembl Acc Id: ENSRNOT00000070964   ⟹   ENSRNOP00000066945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3157,474,642 - 157,490,822 (-)Ensembl
Rnor_6.0 Ensembl3165,520,392 - 165,537,940 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000071119   ⟹   ENSRNOP00000067726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3177,891,705 - 177,909,743 (-)Ensembl
mRatBN7.2 Ensembl3157,474,642 - 157,490,822 (-)Ensembl
Rnor_6.0 Ensembl3165,520,392 - 165,537,940 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000129273   ⟹   ENSRNOP00000105607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3177,891,705 - 177,909,626 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000135943   ⟹   ENSRNOP00000107563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3177,891,705 - 177,907,930 (-)Ensembl
RefSeq Acc Id: NM_001427495   ⟹   NP_001414424
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83177,891,705 - 177,909,743 (-)NCBI
Dahl_SR_JrHsd3175,962,662 - 175,980,652 (-)NCBI
Lyon_Normotensive3182,823,513 - 182,841,502 (-)NCBI
Lyon_Hypertensive3174,790,340 - 174,808,330 (-)NCBI
F344_StmMcwi3155,686,971 - 155,704,963 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001414424 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL96356 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067726
  ENSRNOP00000067726.1
  ENSRNOP00000105607.1
  ENSRNOP00000107563.1
Ensembl Acc Id: ENSRNOP00000066945   ⟸   ENSRNOT00000070964
Ensembl Acc Id: ENSRNOP00000067726   ⟸   ENSRNOT00000071119
RefSeq Acc Id: NP_001414424   ⟸   NM_001427495
- UniProtKB: A6JXQ3 (UniProtKB/TrEMBL),   M0RDM1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105607   ⟸   ENSRNOT00000129273
Ensembl Acc Id: ENSRNOP00000107563   ⟸   ENSRNOT00000135943
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RDM1-F1-model_v2 AlphaFold M0RDM1 1-1070 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597672 AgrOrtholog
BioCyc Gene G2FUF-46693 BioCyc
Ensembl Genes ENSRNOG00000050035 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071119 ENTREZGENE
  ENSRNOT00000071119.5 UniProtKB/TrEMBL
  ENSRNOT00000129273.1 UniProtKB/TrEMBL
  ENSRNOT00000135943.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Sal_C2H2-zinc-finger UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene 686412 ENTREZGENE
PANTHER SAL-LIKE PROTEIN UniProtKB/TrEMBL
  SAL-LIKE PROTEIN 4 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Sall4 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000050035 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0ABK0LJ04_RAT UniProtKB/TrEMBL
  A0ABK0LPA9_RAT UniProtKB/TrEMBL
  A6JXQ3 ENTREZGENE, UniProtKB/TrEMBL
  M0RDM1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-11 Sall4  spalt-like transcription factor 4  Sall4  sal-like 4 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-16 Sall4  sal-like 4 (Drosophila)  LOC686412  similar to sal-like 4 isoform a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC686412  similar to sal-like 4 isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL