Tafa4 (TAFA chemokine like family member 4) - Rat Genome Database

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Gene: Tafa4 (TAFA chemokine like family member 4) Rattus norvegicus
Analyze
Symbol: Tafa4
Name: TAFA chemokine like family member 4
RGD ID: 1597443
Description: Predicted to enable receptor ligand activity. Predicted to be involved in macrophage chemotaxis; phagocytosis; and superoxide anion generation. Predicted to act upstream of or within regulation of membrane potential and regulation of sensory perception of pain. Predicted to be located in membrane. Predicted to be active in extracellular space; glutamatergic synapse; and synaptic vesicle membrane. Orthologous to human TAFA4 (TAFA chemokine like family member 4); INTERACTS WITH 1-naphthyl isothiocyanate; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chemokine-like protein TAFA-4; Fam19a4; family with sequence similarity 19 (chemokine (C-C motif)-like), member A4; family with sequence similarity 19 member A4, C-C motif chemokine like; family with sequence similarity 19, member A4; LOC689043; similar to TAFA4 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84130,994,166 - 131,228,032 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4130,994,167 - 131,227,940 (-)EnsemblGRCr8
mRatBN7.24129,437,466 - 129,671,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4129,437,467 - 129,671,249 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4134,863,098 - 135,096,081 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04130,644,141 - 130,877,121 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04129,262,104 - 129,495,081 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04129,196,658 - 129,430,438 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4129,196,659 - 129,430,251 (-)Ensemblrn6Rnor6.0
Rnor_5.04193,702,284 - 193,933,576 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44131,539,009 - 131,783,777 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4118,319,911 - 118,547,558 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:24139797   PMID:25109685  


Genomics

Comparative Map Data
Tafa4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84130,994,166 - 131,228,032 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4130,994,167 - 131,227,940 (-)EnsemblGRCr8
mRatBN7.24129,437,466 - 129,671,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4129,437,467 - 129,671,249 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4134,863,098 - 135,096,081 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04130,644,141 - 130,877,121 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04129,262,104 - 129,495,081 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04129,196,658 - 129,430,438 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4129,196,659 - 129,430,251 (-)Ensemblrn6Rnor6.0
Rnor_5.04193,702,284 - 193,933,576 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44131,539,009 - 131,783,777 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4118,319,911 - 118,547,558 (-)NCBICelera
Cytogenetic Map4q34NCBI
TAFA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38368,731,766 - 68,932,547 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl368,731,764 - 68,953,297 (-)Ensemblhg38GRCh38
GRCh37368,780,917 - 68,981,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36368,863,607 - 69,064,401 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34368,863,607 - 69,064,401NCBI
Celera368,709,246 - 68,909,796 (-)NCBICelera
Cytogenetic Map3p14.1NCBI
HuRef368,782,334 - 68,982,838 (-)NCBIHuRef
CHM1_1368,723,972 - 68,924,498 (-)NCBICHM1_1
T2T-CHM13v2.0368,769,008 - 68,969,284 (-)NCBIT2T-CHM13v2.0
Tafa4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39696,808,167 - 97,037,452 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl696,808,164 - 97,037,374 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38696,831,206 - 97,060,411 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl696,831,203 - 97,060,413 (-)Ensemblmm10GRCm38
MGSCv37696,781,203 - 97,010,405 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36696,796,672 - 97,025,874 (-)NCBIMGSCv36mm8
Celera698,692,988 - 98,920,973 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map644.8NCBI
Tafa4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542118,920,551 - 19,083,915 (+)Ensembl
ChiLan1.0NW_00495542118,920,551 - 19,083,792 (+)NCBIChiLan1.0ChiLan1.0
TAFA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2268,686,850 - 68,888,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1368,691,637 - 68,891,542 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0368,666,666 - 68,867,917 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1370,034,273 - 70,234,376 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl370,035,940 - 70,186,928 (-)EnsemblpanPan2panpan1.1
TAFA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12022,843,151 - 22,963,722 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2022,837,094 - 22,962,831 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2022,771,694 - 22,937,923 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02022,822,741 - 22,993,879 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2022,822,709 - 22,993,874 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12022,516,744 - 22,689,385 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02022,860,046 - 23,027,518 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02022,930,485 - 23,095,589 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
TAFA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1350,142,700 - 50,353,424 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11350,142,679 - 50,353,448 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21355,225,682 - 55,435,345 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAFA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12229,764,294 - 29,957,792 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041136,834,713 - 137,029,530 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tafa4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247733,207,120 - 3,495,438 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247733,207,277 - 3,495,379 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tafa4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1650,008,993 - 50,165,021 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tafa4
991 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:710
Count of miRNA genes:299
Interacting mature miRNAs:382
Transcripts:ENSRNOT00000067881
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4121020385148834277Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat

Markers in Region
D4Got150  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24129,667,204 - 129,667,292 (+)MAPPERmRatBN7.2
Rnor_6.04129,426,207 - 129,426,294NCBIRnor6.0
Rnor_5.04193,929,532 - 193,929,619UniSTSRnor5.0
RGSC_v3.44131,779,732 - 131,779,820RGDRGSC3.4
RGSC_v3.44131,779,733 - 131,779,820UniSTSRGSC3.4
Celera4118,543,514 - 118,543,601UniSTS
RGSC_v3.14132,024,574 - 132,024,661RGD
RH 3.4 Map4794.3UniSTS
RH 3.4 Map4794.3RGD
RH 2.0 Map4869.5RGD
Cytogenetic Map4q34UniSTS
AU047656  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24129,444,645 - 129,444,831 (+)MAPPERmRatBN7.2
Rnor_6.04129,203,609 - 129,203,794NCBIRnor6.0
Rnor_5.04193,709,177 - 193,709,362UniSTSRnor5.0
RGSC_v3.44131,548,570 - 131,548,755UniSTSRGSC3.4
Celera4118,327,101 - 118,327,286UniSTS
Cytogenetic Map4q34UniSTS
AU047640  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84131,001,287 - 131,001,547 (+)Marker Load Pipeline
mRatBN7.24129,444,589 - 129,444,848 (+)MAPPERmRatBN7.2
Rnor_6.04129,203,553 - 129,203,811NCBIRnor6.0
Rnor_5.04193,709,121 - 193,709,379UniSTSRnor5.0
RGSC_v3.44131,548,514 - 131,548,772UniSTSRGSC3.4
Celera4118,327,045 - 118,327,303UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 14 121 43 41 25 17 25 5 80 38 1 110 8 60 16 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000067881   ⟹   ENSRNOP00000061075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4130,994,167 - 131,227,940 (-)Ensembl
mRatBN7.2 Ensembl4129,437,467 - 129,671,249 (-)Ensembl
Rnor_6.0 Ensembl4129,196,659 - 129,430,251 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111225   ⟹   ENSRNOP00000077857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4130,994,402 - 131,227,940 (-)Ensembl
mRatBN7.2 Ensembl4129,437,703 - 129,671,249 (-)Ensembl
RefSeq Acc Id: NM_001134700   ⟹   NP_001128172
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84130,994,166 - 131,227,940 (-)NCBI
mRatBN7.24129,437,466 - 129,671,249 (-)NCBI
Rnor_6.04129,196,658 - 129,430,251 (-)NCBI
Rnor_5.04193,702,284 - 193,933,576 (-)NCBI
RGSC_v3.44131,539,009 - 131,783,777 (-)RGD
Celera4118,319,911 - 118,547,558 (-)RGD
Sequence:
RefSeq Acc Id: XM_017592897   ⟹   XP_017448386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84131,010,381 - 131,208,221 (-)NCBI
mRatBN7.24129,453,689 - 129,652,819 (-)NCBI
Rnor_6.04129,196,659 - 129,411,513 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592898   ⟹   XP_017448387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84130,994,166 - 131,208,220 (-)NCBI
mRatBN7.24129,453,689 - 129,652,819 (-)NCBI
Rnor_6.04129,196,659 - 129,411,513 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108378   ⟹   XP_038964306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84131,010,381 - 131,228,032 (-)NCBI
mRatBN7.24129,453,689 - 129,671,320 (-)NCBI
RefSeq Acc Id: XM_063286713   ⟹   XP_063142783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84130,994,166 - 131,228,011 (-)NCBI
RefSeq Acc Id: XM_063286714   ⟹   XP_063142784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84130,994,166 - 131,208,221 (-)NCBI
RefSeq Acc Id: XM_063286715   ⟹   XP_063142785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84130,994,166 - 131,228,011 (-)NCBI
RefSeq Acc Id: NP_001128172   ⟸   NM_001134700
- Peptide Label: precursor
- UniProtKB: B1H244 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448386   ⟸   XM_017592897
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448387   ⟸   XM_017592898
- Peptide Label: isoform X2
- UniProtKB: B1H244 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061075   ⟸   ENSRNOT00000067881
RefSeq Acc Id: XP_038964306   ⟸   XM_039108378
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000077857   ⟸   ENSRNOT00000111225
RefSeq Acc Id: XP_063142785   ⟸   XM_063286715
- Peptide Label: isoform X2
- UniProtKB: B1H244 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142783   ⟸   XM_063286713
- Peptide Label: isoform X2
- UniProtKB: B1H244 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142784   ⟸   XM_063286714
- Peptide Label: isoform X2
- UniProtKB: B1H244 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1H244-F1-model_v2 AlphaFold B1H244 1-135 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597443 AgrOrtholog
BioCyc Gene G2FUF-43609 BioCyc
Ensembl Genes ENSRNOG00000005830 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067881 ENTREZGENE
  ENSRNOT00000067881.3 UniProtKB/TrEMBL
  ENSRNOT00000111225.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8364977 IMAGE-MGC_LOAD
InterPro Chemokine-like_FAM19A2 UniProtKB/TrEMBL
  TAFA_chemokine-like UniProtKB/TrEMBL
KEGG Report rno:689043 UniProtKB/TrEMBL
MGC_CLONE MGC:187609 IMAGE-MGC_LOAD
NCBI Gene 689043 ENTREZGENE
PANTHER CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER UniProtKB/TrEMBL
  CHEMOKINE-LIKE PROTEIN TAFA-4 UniProtKB/TrEMBL
Pfam TAFA UniProtKB/TrEMBL
PhenoGen Tafa4 PhenoGen
RatGTEx ENSRNOG00000005830 RatGTEx
UniProt A0A8I5Y9S7_RAT UniProtKB/TrEMBL
  B1H244 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Tafa4  TAFA chemokine like family member 4  Fam19a4  family with sequence similarity 19 member A4, C-C motif chemokine like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-06-01 Fam19a4  family with sequence similarity 19 member A4, C-C motif chemokine like  Fam19a4  family with sequence similarity 19 (chemokine (C-C motif)-like), member A4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-15 Fam19a4  family with sequence similarity 19 (chemokine (C-C motif)-like), member A4  LOC689043  similar to TAFA4 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC689043  similar to TAFA4 protein  LOC687122  similar to TAFA4 protein  Data merged from RGD:1588964 1643240 APPROVED
2006-11-20 LOC689043  similar to TAFA4 protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687122  similar to TAFA4 protein      Symbol and Name status set to provisional 70820 PROVISIONAL