Hbb-bs (hemoglobin, beta adult s chain) - Rat Genome Database

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Gene: Hbb-bs (hemoglobin, beta adult s chain) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Hbb-bs (Ensembl: Hbbl1)
Name: hemoglobin, beta adult s chain (Ensembl:hemoglobin subunit beta like 1)
RGD ID: 1597422
Description: Human ortholog(s) of this gene implicated in several diseases, including acute chest syndrome; congenital hemolytic anemia (multiple); polycythemia (multiple); sickle cell disease (multiple); and thalassemia (multiple). Orthologous to human HBB (hemoglobin subunit beta) and HBD (hemoglobin subunit delta); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: beta-2-globin; beta-globin; beta-hemoglobin; hemoglobin beta chain, minor-form; hemoglobin beta-2 chain; hemoglobin subunit beta-2; III beta-3 globin; LOC103694857; LOC689064
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81167,630,245 - 167,631,630 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21158,218,356 - 158,219,741 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1158,120,200 - 158,252,012 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1166,216,373 - 166,217,758 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01173,396,390 - 173,397,775 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01166,284,588 - 166,285,973 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1166,611,768 - 166,613,149 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1171,626,362 - 171,627,743 (-)NCBILyon_Normotensive
Lyon_Hypertensive1168,293,632 - 168,295,013 (-)NCBILyon_Hypertensive
F344_StmMcwi1166,812,670 - 166,814,055 (-)NCBIF344_StmMcwi
Rnor_6.01168,964,202 - 168,965,568 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1168,945,449 - 168,965,566 (+)Ensemblrn6Rnor6.0
Rnor_5.01175,098,754 - 175,100,120 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41161,578,126 - 161,579,492 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1156,255,533 - 156,256,825 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Differential gene expression pattern of diabetic rat retinas after intravitreal injection of erythropoietin. Chu Q, etal., Clin Experiment Ophthalmol. 2011 Mar;39(2):142-51. doi: 10.1111/j.1442-9071.2010.02437.x.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Functional alterations in adult and fetal hemoglobin Sassari Asp-alpha 126(H9)-->His. The role of alpha 1 alpha 2 contact. Sanna MT, etal., J Biol Chem. 1994 Jul 15;269(28):18338-42.
Additional References at PubMed
PMID:2263193   PMID:2587229   PMID:2748344   PMID:2777087   PMID:3357786   PMID:3453111   PMID:22516433   PMID:29476059  


Genomics

Variants

.
Variants in Hbb-bs
15 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889419Cstrr2Cold stress response QTL 20.05urine catecholamine amount (VT:0010502)absolute change in urine norepinephrine level (CMO:0001634)1165278545168003898Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1131179947176179947Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)1137611478182611478Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1153679879198679879Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130419227175419227Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1132760429191848948Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1153679879205813246Rat
8694166Bw147Body weight QTL 1476.830.001body mass (VT:0001259)body weight gain (CMO:0000420)1153788989198788989Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1142582336182383862Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1160573753210707719Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130419227175419227Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1139442053223964440Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1160573753210707719Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1165278545210278545Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1161077990206077990Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1127329268206393015Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1159894717207261263Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1163992710208992710Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1109493780193400781Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1141173126169168317Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1155359438194575574Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1140833106185833106Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1153679879232414077Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1160574007235238518Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1116099376191260518Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1131243790176243790Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1129182274174182274Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1132760429191848948Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1162753891207753891Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611176289080Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1153680016182383862Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1153680016183564652Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1128019551173019551Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1139442053223964440Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1140048073185048073Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1135021436178317588Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1140048073185048073Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753210707719Rat
8693608Alc24Alcohol consumption QTL 242.30.74drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1159863716177663210Rat
1576310Schws2Schwannoma susceptibility QTL 20.029nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1153788989198788989Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1165707719210707719Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1135021436180021436Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1132760429191190115Rat
152025212Bw190Body weight QTL 1905.7body mass (VT:0001259)1132966869206393015Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1140915717185915717Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1132760429191848948Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1160573753210707719Rat
7411599Foco11Food consumption QTL 1118.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1153788989198788989Rat

Markers in Region
AI036344  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21158,218,397 - 158,218,506 (-)MAPPERmRatBN7.2
Rnor_6.01168,965,418 - 168,965,526NCBIRnor6.0
Rnor_5.01175,098,796 - 175,098,904UniSTSRnor5.0
RGSC_v3.41161,578,168 - 161,578,276UniSTSRGSC3.4
Cytogenetic Map1q32UniSTS
Hbb-b1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1156,262,234 - 156,262,291UniSTS
Celera1156,256,379 - 156,256,436UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q22UniSTS
Hbb-b1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21158,243,935 - 158,244,689 (-)MAPPERmRatBN7.2
mRatBN7.21158,218,599 - 158,219,353 (-)MAPPERmRatBN7.2
mRatBN7.21158,237,209 - 158,237,963 (-)MAPPERmRatBN7.2
Rnor_6.01168,964,571 - 168,965,324NCBIRnor6.0
Rnor_6.01168,957,845 - 168,958,598NCBIRnor6.0
Rnor_5.01175,098,998 - 175,099,751UniSTSRnor5.0
Rnor_5.01175,128,184 - 175,128,937UniSTSRnor5.0
Celera1156,255,703 - 156,256,456UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1q32UniSTS
Hbb-b1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1156,261,406 - 156,262,441UniSTS
Celera1156,255,595 - 156,256,586UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 10 26 67 128 87 11 25 34 32 5 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001111269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DY319996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X06701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X67616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000019913   ⟹   ENSRNOP00000019914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1158,236,972 - 158,238,356 (-)Ensembl
Rnor_6.0 Ensembl1168,945,567 - 168,953,025 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087661   ⟹   ENSRNOP00000068875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1158,218,358 - 158,231,777 (-)Ensembl
Rnor_6.0 Ensembl1168,945,449 - 168,965,566 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089102   ⟹   ENSRNOP00000072853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1158,218,357 - 158,231,637 (-)Ensembl
Rnor_6.0 Ensembl1168,964,202 - 168,965,566 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089125   ⟹   ENSRNOP00000068726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1158,120,200 - 158,251,837 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090422   ⟹   ENSRNOP00000070324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1158,224,173 - 158,238,388 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090678   ⟹   ENSRNOP00000069937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1158,218,358 - 158,238,511 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090745   ⟹   ENSRNOP00000071528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1158,243,698 - 158,245,082 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099220   ⟹   ENSRNOP00000084256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1158,218,358 - 158,252,012 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113702   ⟹   ENSRNOP00000091885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1158,224,162 - 158,238,511 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114441   ⟹   ENSRNOP00000085307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1158,243,694 - 158,251,868 (-)Ensembl
RefSeq Acc Id: NM_001111269   ⟹   NP_001104739
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81167,630,245 - 167,631,630 (-)NCBI
mRatBN7.21158,218,356 - 158,219,741 (-)NCBI
Dahl_SR_JrHsd1166,611,768 - 166,613,149 (-)NCBI
Lyon_Normotensive1171,626,362 - 171,627,743 (-)NCBI
Lyon_Hypertensive1168,293,632 - 168,295,013 (-)NCBI
F344_StmMcwi1166,812,670 - 166,814,055 (-)NCBI
Rnor_6.01168,964,202 - 168,965,568 (+)NCBI
Rnor_5.01175,098,754 - 175,100,120 (-)NCBI
RGSC_v3.41161,578,126 - 161,579,492 (-)RGD
Celera1156,255,533 - 156,256,825 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001104739 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA29887 (Get FASTA)   NCBI Sequence Viewer  
  CAA47876 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019914.5
  ENSRNOP00000071528.1
GenBank Protein P11517 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001104739   ⟸   NM_001111269
- UniProtKB: P11517 (UniProtKB/Swiss-Prot),   A0A1K0FUA6 (UniProtKB/TrEMBL),   A0A1K0GGD1 (UniProtKB/TrEMBL),   A0A0G2JTW9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072853   ⟸   ENSRNOT00000089102
Ensembl Acc Id: ENSRNOP00000068875   ⟸   ENSRNOT00000087661
Ensembl Acc Id: ENSRNOP00000019914   ⟸   ENSRNOT00000019913
Ensembl Acc Id: ENSRNOP00000070324   ⟸   ENSRNOT00000090422
Ensembl Acc Id: ENSRNOP00000085307   ⟸   ENSRNOT00000114441
Ensembl Acc Id: ENSRNOP00000084256   ⟸   ENSRNOT00000099220
Ensembl Acc Id: ENSRNOP00000071528   ⟸   ENSRNOT00000090745
Ensembl Acc Id: ENSRNOP00000069937   ⟸   ENSRNOT00000090678
Ensembl Acc Id: ENSRNOP00000068726   ⟸   ENSRNOT00000089125
Ensembl Acc Id: ENSRNOP00000091885   ⟸   ENSRNOT00000113702
Protein Domains
GLOBIN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P11517-F1-model_v2 AlphaFold P11517 1-147 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690274
Promoter ID:EPDNEW_R799
Type:multiple initiation site
Name:LOC103694857_1
Description:hemoglobin subunit beta-2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01168,964,184 - 168,964,244EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597422 AgrOrtholog
BioCyc Gene G2FUF-58137 BioCyc
Ensembl Genes ENSRNOG00000047098 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000019913.7 UniProtKB/Swiss-Prot
  ENSRNOT00000090745.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.490.10 UniProtKB/Swiss-Prot
InterPro Globin UniProtKB/Swiss-Prot
  Globin-like_sf UniProtKB/Swiss-Prot
  Globin/Proto UniProtKB/Swiss-Prot
  Haemoglobin_b UniProtKB/Swiss-Prot
  Hemoglobin_oxygen_transport UniProtKB/Swiss-Prot
KEGG Report rno:100134871 UniProtKB/Swiss-Prot
  rno:689064 UniProtKB/Swiss-Prot
NCBI Gene 689064 ENTREZGENE
PANTHER HEMOGLOBIN FAMILY MEMBER UniProtKB/Swiss-Prot
  HEMOGLOBIN SUBUNIT BETA UniProtKB/Swiss-Prot
Pfam Globin UniProtKB/Swiss-Prot
PhenoGen Hbb-bs PhenoGen
PRINTS BETAHAEM UniProtKB/Swiss-Prot
PROSITE GLOBIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000047098 RatGTEx
Superfamily-SCOP SSF46458 UniProtKB/Swiss-Prot
UniProt A0A0G2JTW9 ENTREZGENE
  A0A1K0FUA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A1K0GGD1 ENTREZGENE, UniProtKB/TrEMBL
  HBB2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Hbb-bs  hemoglobin, beta adult s chain  LOC103694857  hemoglobin subunit beta-2  Data merged from RGD:9218369 737654 PROVISIONAL
2019-08-08 Hbb-bs  hemoglobin, beta adult s chain  LOC689064  beta-globin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103694857  hemoglobin subunit beta-2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC689064  beta-globin      Symbol and Name status set to provisional 70820 PROVISIONAL