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Gene: Derl3 (derlin 3) Rattus norvegicus

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Symbol:

Derl3

Name:

derlin 3

RGD ID:

1597373

Description:

Predicted to enable signal recognition particle binding activity. Predicted to be involved in several processes, including ERAD pathway; endoplasmic reticulum unfolded protein response; and negative regulation of retrograde protein transport, ER to cytosol. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DERL3 (derlin 3); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Der1-like domain family, member 3; derlin-3; LOC103694875; LOC690315; similar to Der1-like domain family, member 3; uncharacterized protein LOC103694875

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DERL3 (derlin 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Derl3 (Der1-like domain family, member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Derl3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DERL3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DERL3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Derl3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DERL3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DERL3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Derl3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Derl3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DERL2 (derlin 2)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	DERL3 (derlin 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DERL3 (derlin 3)	Alliance	DIOPT (HGNC\|OrthoFinder\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Derl3 (Der1-like domain family, member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Derl3 (Der1-like domain family, member 3)	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	derl3 (derlin 3)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	DFM1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	DFM1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Der-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Der-2	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	R151.6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R151.6	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	12,753,926 - 12,766,478 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	12,762,981 - 12,766,477 (-)	Ensembl				GRCr8
mRatBN7.2	20	12,754,490 - 12,768,454 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	12,763,543 - 12,767,027 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	13,471,091 - 13,473,652 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	12,832,012 - 12,834,573 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	13,303,805 - 13,306,366 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	13,692,102 - 13,707,645 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	13,704,314 - 13,706,205 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	15,858,297 - 15,863,183 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	13,163,287 - 13,165,848 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	14,255,751 - 14,258,312 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

1H-pyrazole (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (EXP)

aldehydo-D-glucose (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

bromobenzene (EXP)

cadmium atom (EXP)

cadmium dichloride (EXP)

calcitriol (ISO)

carbon nanotube (ISO)

ciguatoxin CTX1B (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) chloride (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

dextran sulfate (ISO)

dibutyl phthalate (ISO)

dichloroacetic acid (ISO)

diclofenac (ISO)

dioxygen (EXP)

endosulfan (EXP)

epoxiconazole (ISO)

folic acid (ISO)

fructose (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

glucose (ISO)

indole-3-methanol (EXP)

isoprenaline (ISO)

luteolin (EXP)

mono(2-ethylhexyl) phthalate (ISO)

Monobutylphthalate (ISO)

N-ethyl-N-nitrosourea (ISO)

N-methyl-4-phenylpyridinium (EXP)

N-nitrosodiethylamine (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

pravastatin (EXP,ISO)

pregnenolone 16alpha-carbonitrile (ISO)

quercetin (EXP)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

streptozocin (ISO)

sunitinib (ISO)

tebuconazole (ISO)

testosterone (EXP,ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (ISO)

triclosan (ISO)

tunicamycin (ISO)

valproic acid (ISO)

XL147 (ISO)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to stress (IEA)

endoplasmic reticulum unfolded protein response (IBA,IEA,ISO)

ERAD pathway (IBA,IEA,ISO)

negative regulation of retrograde protein transport, ER to cytosol (IEA,ISO)

proteasomal protein catabolic process (IEA)

protein N-linked glycosylation (IEA,ISO)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IBA,IEA,ISO)

Molecular Function

protein binding (ISO)

protein-containing complex binding (IEA,ISO)

signal recognition particle binding (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Endoplasmic Reticulum-associated degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16449189	PMID:19940266	PMID:22607976	PMID:25660456	PMID:26565908

Genomics

Comparative Map Data

Derl3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	12,753,926 - 12,766,478 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	12,762,981 - 12,766,477 (-)	Ensembl				GRCr8
mRatBN7.2	20	12,754,490 - 12,768,454 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	12,763,543 - 12,767,027 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	13,471,091 - 13,473,652 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	12,832,012 - 12,834,573 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	13,303,805 - 13,306,366 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	13,692,102 - 13,707,645 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	13,704,314 - 13,706,205 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	15,858,297 - 15,863,183 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	13,163,287 - 13,165,848 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	14,255,751 - 14,258,312 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

DERL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	23,834,503 - 23,839,006 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	23,834,503 - 23,839,128 (-)	Ensembl			hg38	GRCh38
GRCh37	22	24,176,690 - 24,181,193 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	22,506,690 - 22,511,201 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	22	22,501,245 - 22,505,755	NCBI
Celera	22	8,015,749 - 8,020,256 (-)	NCBI		Celera
Cytogenetic Map	22	q11.23	NCBI
HuRef	22	7,164,611 - 7,169,120 (-)	NCBI		HuRef
CHM1_1	22	24,188,905 - 24,193,409 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	24,281,689 - 24,286,190 (-)	NCBI		T2T-CHM13v2.0

Derl3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	75,729,232 - 75,731,775 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	75,729,247 - 75,731,775 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	75,893,398 - 75,895,941 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	75,893,413 - 75,895,941 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	75,356,143 - 75,358,686 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	75,337,114 - 75,339,657 (+)	NCBI		MGSCv36	mm8
Celera	10	76,938,087 - 76,940,630 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	38.61	NCBI

Derl3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	8,415,839 - 8,421,762 (+)	Ensembl
ChiLan1.0	NW_004955455	8,415,868 - 8,418,753 (+)	NCBI	ChiLan1.0	ChiLan1.0

DERL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	33,565,313 - 33,570,562 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	36,301,966 - 36,307,067 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	4,589,448 - 4,594,628 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	22,673,908 - 22,678,451 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	22,673,908 - 22,678,444 (-)	Ensembl			panPan2	panpan1.1

DERL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	28,688,307 - 28,690,400 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	28,688,106 - 28,690,400 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	27,761,400 - 27,763,725 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	30,093,061 - 30,095,386 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	30,093,129 - 30,095,386 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	28,174,380 - 28,176,705 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	27,792,314 - 27,794,639 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	28,780,177 - 28,785,974 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Derl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	141,478,848 - 141,482,070 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	1,271,797 - 1,275,214 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	1,271,980 - 1,275,212 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DERL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	49,871,218 - 49,877,672 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	49,871,077 - 49,875,022 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	53,313,332 - 53,315,464 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DERL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	6,944,291 - 6,949,948 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	6,947,403 - 6,949,845 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666100	423,257 - 428,076 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Derl3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	10,357,627 - 10,359,779 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	10,357,560 - 10,359,779 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Derl3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	11,549,596 - 11,552,152 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Derl3
29 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	85
Count of miRNA genes:	72
Interacting mature miRNAs:	82
Transcripts:	ENSRNOT00000038623
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8043920	15089182	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1	14100378	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Markers in Region

MARC_9679-9680:996688523:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	20	12,764,575 - 12,765,356 (+)	Marker Load Pipeline
mRatBN7.2	20	12,765,137 - 12,765,917 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	13,704,343 - 13,705,122	NCBI	Rnor6.0
Rnor_5.0	20	15,859,906 - 15,860,685	UniSTS	Rnor5.0
RGSC_v3.4	20	13,163,959 - 13,164,738	UniSTS	RGSC3.4
Celera	20	14,256,423 - 14,257,202	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
7	1	18	51	66	137	94	11	50	36	32	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC091362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC167034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000038623 ⟹ ENSRNOP00000029737

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	12,763,904 - 12,766,465 (-)	Ensembl
mRatBN7.2 Ensembl	20	12,764,466 - 12,767,027 (-)	Ensembl
Rnor_6.0 Ensembl	20	13,704,314 - 13,706,205 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086463 ⟹ ENSRNOP00000074042

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	12,764,466 - 12,767,027 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116934 ⟹ ENSRNOP00000085039

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	12,762,981 - 12,766,477 (-)	Ensembl
mRatBN7.2 Ensembl	20	12,763,543 - 12,766,893 (-)	Ensembl

RefSeq Acc Id:

NM_001109577 ⟹ NP_001103047

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,763,904 - 12,766,465 (-)	NCBI
mRatBN7.2	20	12,764,466 - 12,767,027 (-)	NCBI
Rnor_6.0	20	13,703,671 - 13,706,232 (-)	NCBI
Rnor_5.0	20	15,858,297 - 15,863,183 (-)	NCBI
RGSC_v3.4	20	13,163,287 - 13,165,848 (-)	RGD
Celera	20	14,255,751 - 14,258,312 (-)	RGD

Sequence:

show sequence

GCCGGCGCGCGCGCTGAAGATTTTTCGATGGCTGGGCAGAGGCTGGCGGCGGATTTCCTGCAGG
TGCCGGCGGTGACACGAGCCTACACCGCGGCCTGCGTCCTCACCACGGCCGCAGTGCAGCTGGA
GCTCCTCAGCCCCTTCCAGCTCTACTTCAACCCGCATCTGGTGTTCCGGAAGTTCCAGGTCTGG
AGGCTCATCACTACCTTCCTCTTCTTCGGGCCCCTGGGATTCGGCTTCTTTTTCAACATGCTCT
TCGTGTTCCGCTACTGCCGCATGCTGGAGGAGGGTTCTTTCCGTGGCCGCAAGGCCGACTTCGT
TTTCATGTTTCTCTTCGGTGGTGTTCTTATGACTCTGCTGGGATTCCTGGGCAGCATGTTTTTC
CTGGGACAGGCCCTCATGGCCATGCTGGTCTATGTGTGGAGCCGTCGCAGCCCGCATGTGAGGG
TCAACTTCTTTGGCTTACTCAACTTCCAGGCGCCATTCCTGCCCTGGGCCCTCATGGGCTTCTC
GCTGCTTCTGGGCAACTCGGTTATCACAGACCTGCTAGGGATCATTGTGGGCCACATCTACTAC
TTCCTAGAAGATGTCTTTCCCAACCAGCCTGGAGGCAAGAGACTGCTGCTGACCCCTAGCTTCT
TGAAGCTACTACTAGATGACCCTCAGGAGGACCCCAATTACCTGCCCCTCCCTGAGGAGCATCC
AGAGGCCTAACTGCAGCTCCTGGAACAGTAAGCGCACTCTGGTCAGCCCCAGGCTTTAGACAGC
ACTCTATCCTTCCCCTCCACCTCAGCTCGAGCTGAGCAGCACTCGGAAGGCTGGGCCTCCCTGC
AGCCTTGGTGCCTCAGCCAGCAACACCATGCACTTCTCTGTATCGTCTCTCCGCTCAACCACAG
TGACAGGACACGGAGCCCAGAGAGGCCTAAGACTGCCTAGAGATGCCCGGCAGAGTTCTGAACT
ACAGACCCAAGGACTCATCTTCACGCTGTCTGTCTGTCAGGGTCTTGATGGGGACCTCAGTCCC
AGTCATTAGAGCTGGTGCCATCCGCCTAGCCTGTCTTTGTCCTCACCTTCTCTAGCTGGTCCCA
TGGACAAGTTTGGCTCTCTGCCATGCTAGTGAGCCCAGGGCCTTGAGCTCTATTTAAGCAGCAG
CCCGGGTACAGCAGAGGTAGTTCTGGGACATCCCATCTGTCTTGCAGCTGAAGGCCTGTGTGGG
CAGGTGTCCCTACCTGGTTTTCCTTGTTGGTATACATCTGCCCCACGGGGCTTACTCCTGAATG
CCCACCCAACAGCATGGGAATTCCCCGTACCATTGCCTGTCATTTCTATGGTAACAAAAATGTT
TTCTACTGAGTCT

hide sequence

RefSeq Acc Id:

XM_008773838 ⟹ XP_008772060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,763,908 - 12,766,339 (-)	NCBI
mRatBN7.2	20	12,761,747 - 12,768,453 (-)	NCBI

Sequence:

show sequence

GGCTGGGCAGAGGCTGGCGGCGGATTTCCTGCAGGTGCCGGCGGTGACACGAGCCTACACCGCG
GCCTGCGTCCTCACCACGGCCGCAGTGGTGAGCGGGCCGGGCGGGCGTGGCGGCGCCATGGTTA
CAATCCCTGGCCGGTCAGAGGGGGTTAGGGATGTCGCCTGCTTCCGGGGTCTTACACGCTCCCC
GTCCCACAGCAGCTGGAGCTCCTCAGCCCCTTCCAGCTCTACTTCAACCCGCATCTGGTGTTCC
GGAAGTTCCAGGTCTGGAGGCTCATCACTACCTTCCTCTTCTTCGGGCCCCTGGGATTCGGCTT
CTTTTTCAACATGCTCTTCGTGTATCCTGGGCCACCTTGGCGGGTTGGAGGTGGGGTGAGCCCG
GGTGGGGGTTATGCTGGGCTAGTAACGGGGAAACTGAGGCCCAGTCGACGTGGCACTTCCTATG
CCAGTGTTGCAGGTTCCGCTACTGCCGCATGCTGGAGGAGGGTTCTTTCCGTGGCCGCAAGGCC
GACTTCGTTTTCATGTTTCTCTTCGGTGGTGTTCTTATGACTCTGCTGGGATTCCTGGGCAGCA
TGTTTTTCCTGGGACAGGCCCTCATGGCCATGCTGGTCTATGTGTGGAGCCGTCGCAGCCCGCA
TGTGAGGGTCAACTTCTTTGGCTTACTCAACTTCCAGGCGCCATTCCTGCCCTGGGCCCTCATG
GGCTTCTCGCTGCTTCTGGGCAACTCGGTTATCACAGACCTGCTAGGGATCATTGTGGGCCACA
TCTACTACTTCCTAGAAGATGTCTTTCCCAACCAGCCTGGAGGCAAGAGACTGCTGCTGACCCC
TAGCTTCTTGAAGCTACTACTAGATGACCCTCAGGAGGACCCCAATTACCTGCCCCTCCCTGAG
GAGCATCCAGAGGCCTAACTGCAGCTCCTGGAACAGTAAGCGCACTCTGGTCAGCCCCAGGCTT
TAGACAGCACTCTATCCTTCCCCTCCACCTCAGCTCGAGCTGAGCAGCACTCGGAAGGCTGGGC
CTCCCTGCAGCCTTGGTGCCTCAGCCAGCAACACCATGCACTTCTCTGTATCGTCTCTCCGCTC
AACCACAGTGACAGGACACGGAGCCCAGAGAGGCCTAAGACTGCCTAGAGATGCCCGGCAGAGT
TCTGAACTACAGACCCAAGGACTCATCTTCACGCTGTCTGTCTGTCAGGGTCTTGATGGGGACC
TCAGTCCCAGTCATTAGAGCTGGTGCCATCCGCCTAGCCTGTCTTTGTCCTCACCTTCTCTAGC
TGGTCCCATGGACAAGTTTGGCTCTCTGCCATGCTAGTGAGCCCAGGGCCTTGAGCTCTATTTA
AGCAGCAGCCCGGGTACAGCAGAGGTAGTTCTGGGACATCCCATCTGTCTTGCAGCTGAAGGCC
TGTGTGGGCAGGTGTCCCTACCTGGTTTTCCTTGTTGGTATACATCTGCCCCACGGGGCTTACT
CCTGAATGCCCACCCAACAGCATGGGAATTCCCCGTACCATTGCCTGTCATTTCTATGGTAACA
AAAATGTTTTCTACTGA

hide sequence

RefSeq Acc Id:

XM_008773839 ⟹ XP_008772061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,763,908 - 12,766,339 (-)	NCBI
mRatBN7.2	20	12,761,747 - 12,768,454 (-)	NCBI

Sequence:

show sequence

GGCTGGGCAGAGGCTGGCGGCGGATTTCCTGCAGGTGCCGGCGGTGACACGAGCCTACACCGCG
GCCTGCGTCCTCACCACGGCCGCAGTGGTGAGCGGGCCGGGCGGGCGTGGCGGCGCCATGGTTA
CAATCCCTGGCCGGTCAGAGGGGGTTAGGGATGTCGCCTGCTTCCGGGGTCTTACACGCTCCCC
GTCCCACAGCAGCTGGAGCTCCTCAGCCCCTTCCAGCTCTACTTCAACCCGCATCTGGTGTTCC
GGAAGTTCCAGGTCTGGAGGCTCATCACTACCTTCCTCTTCTTCGGGCCCCTGGGATTCGGCTT
CTTTTTCAACATGCTCTTCGTGTATCCTGGGCCACCTTGGCGGGTTGGAGGTGGGGTGAGCCCG
GGTGGGGGTTATGCTGGGCTAGTAACGGGGAAACTGAGGCCCAGTCGACGTGGCACTTCCTATG
CCAGTGTTGCAGGTTCCGCTACTGCCGCATGCTGGAGGAGGGTTCTTTCCGTGGCCGCAAGGCC
GACTTCGTTTTCATGTTTCTCTTCGGTGGTGTTCTTATGACTCTGCTGGGATTCCTGGGCAGCA
TGTTTTTCCTGGGACAGGCCCTCATGGCCATGCTGGTCTATGTGTGGAGCCGTCGCAGCCCGCA
TGTGAGGGTCAACTTCTTTGGCTTACTCAACTTCCAGGCGCCATTCCTGCCCTGGGCCCTCATG
GGCTTCTCGCTGCTTCTGGGCAACTCGGTTATCACAGACCTGCTAGGGATCATTGTGGGCCACA
TCTACTACTTCCTAGAAGATGTCTTTCCCAACCAGCCTGGAGGCAAGAGACTGCTGCTGACCCC
TAGCTTCTTGAAGCTACTACTAGATGACCCTCAGGAGGACCCCAATTACCTGCCCCTCCCTGAG
GAGCATCCAGAGGCCTAACTGCAGCTCCTGGAACATGACAGGACACGGAGCCCAGAGAGGCCTA
AGACTGCCTAGAGATGCCCGGCAGAGTTCTGAACTACAGACCCAAGGACTCATCTTCACGCTGT
CTGTCTGTCAGGGTCTTGATGGGGACCTCAGTCCCAGTCATTAGAGCTGGTGCCATCCGCCTAG
CCTGTCTTTGTCCTCACCTTCTCTAGCTGGTCCCATGGACAAGTTTGGCTCTCTGCCATGCTAG
TGAGCCCAGGGCCTTGAGCTCTATTTAAGCAGCAGCCCGGGTACAGCAGAGGTAGTTCTGGGAC
ATCCCATCTGTCTTGCAGCTGAAGGCCTGTGTGGGCAGGTGTCCCTACCTGGTTTTCCTTGTTG
GTATACATCTGCCCCACGGGGCTTACTCCTGAATGCCCACCCAACAGCATGGGAATTCCCCGTA
CCATTGCCTGTCATTTCTATGGTAACAAAAATGTTTTCTACTGA

hide sequence

RefSeq Acc Id:

XM_008773841 ⟹ XP_008772063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,761,185 - 12,766,478 (-)	NCBI
mRatBN7.2	20	12,761,747 - 12,768,447 (-)	NCBI

Sequence:

show sequence

GAGCAGACAGTGCTCTTAACTGCTGAGCCATCTTTCCAGCCCAAGTGTTAAGTTTTATTTGAAT
AAAATGAAATCACTAGTTTAGTTTTGTGAGACAGCGTTTTGTTATGTGGCTCAGGTGTCATGAG
GAGAACTCACTATCCTGCCTCCGATTTCCTCCTGCTAGGGTTCTAGATACATCTGATAATTGTA
TATTTATTTGTGTATTTATTTAGATACATCTGATAACTGATATTTATTTGTTTGGGGCTAGGGT
TTCACTATGTAACCCTAGCTGGCCTAGAACTCTCTCTGTTGACAAGACAAGTCTCGGACTTTCA
GAGATCTGCCTGCCTCTGCCTTTGGAGTGTTGCGAATGAAGACAGGCAGTACCACACCCAGTGG
TTGTCTTACTTTACACATTTGCTTACCACCTTTACTGTTCTCCCCAGTGGCTGAGCCATTTTAA
ATCTCCACAAAAACCGCATGAAAAAAATGTACGTTTCCATATCCTAGACAGCACACGTTACTGT
TTTGTTTGTATAACCTTTTAGTGAGCACAGGGACCTTTTAGAAGTGACCATTAAATGTCATCTC
CTCATCTTGGCTTCCCAGGTTAACTTACTTACCTTGGAGGTTCGTCTCAGGCATTATTTTCCAT
CAAGGAGCTGTTCTAGGTCGCGTGGTATTGAACTGTCTGGACCATGATGGACAGTGTCTTTGGT
TGGCTACAGGATCCCCAGCATTTATCAGATTGTTCGGCACACAGTAGGTCCTCAATAAATGGTT
AACTAATAGCATTTTTCTTTTCTACCAAATTTCTTTTTTTTTTTTTTTCCGGAGCTGGGGACCG
AACCCAGGGCCTTGAGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCTTTCT
ACCAAATTTCAAGTTCCTCTCCAGTCTGCTCGCTTGCTCCAGCATGGCTCTGAACCTTCTTCGG
TCGGATCCTCACTAAAGCGCACACTCAGGAGGATCACGACTGGAACTTGCACAAGATAGCTGGA
CTCCAGAGTTTTACAGGGTGTTGCCAGTAAAGCAGAGGCCGGCCGGAGGCCAGCCCAGCAAATC
GGCCCGCCCCTTGCTCGCCTCTTTGTGCTTCTTTTCATGGTCCGCCCCCGTGGCAAGCTCGTGG
GTTTTTGCTATTGGTTCTTCTCTAGATGATGTCAAACGACCAATTCTGATTGGCTACAAAACCT
CCCACGCCTCCATAGCAGCCACAACAACCGCCACGTGCTCTACCGTGGGACTTCCTTATTGGCT
AGCCGCCTCAACACACCTGGCCGGCCCGCTTTCTCTTCCCATTGGCTTTCCAGTCCCCAGGCTC
GGCTCCTCCGACGCTGATTGGTCCTCAGAGAGCGAGGCGGGGCTTGGGGCGGGTAAAGAGCGCG
GGTTTGCCGGCGCGCGCGCTGAAGATTTTTCGATGGCTGGGCAGAGGCTGGCGGCGGATTTCCT
GCAGGTGCCGGCGGTGACACGAGCCTACACCGCGGCCTGCGTCCTCACCACGGCCGCAGTGCAG
CTGGAGCTCCTCAGCCCCTTCCAGCTCTACTTCAACCCGCATCTGGTGTTCCGGAAGTTCCAGG
TCTGGAGGCTCATCACTACCTTCCTCTTCTTCGGGCCCCTGGGATTCGGCTTCTTTTTCAACAT
GCTCTTCGTGTTCCGCTACTGCCGCATGCTGGAGGAGGGTTCTTTCCGTGGCCGCAAGGCCGAC
TTCGTTTTCATGTTTCTCTTCGGTGGTGTTCTTATGACTCTGCTGGGATTCCTGGGCAGCATGT
TTTTCCTGGGACAGGCCCTCATGGCCATGCTGGTCTATGTGTGGAGCCGTCGCAGCCCGCATGT
GAGGGTCAACTTCTTTGGCTTACTCAACTTCCAGGCGCCATTCCTGCCCTGGGCCCTCATGGGC
TTCTCGCTGCTTCTGGGCAACTCGGTTATCACAGACCTGCTAGGGATCATTGTGGGCCACATCT
ACTACTTCCTAGAAGATGTCTTTCCCAACCAGCCTGGAGGCAAGAGACTGCTGCTGACCCCTAG
CTTCTTGAAGCTACTACTAGATGACCCTCAGGAGGACCCCAATTACCTGCCCCTCCCTGAGGAG
CATCCAGAGGCCTAACTGCAGCTCCTGGAACAGTGTTGCCCACCCATGACCGAGTCCTCTAGGA
GGGATTCATTCTAGAGCAGCACGGTCCCCCCATCTGGCAGCAGCTTGTCTGGATGTATCAGGAC
CAAGGCCAGCAGGAGCTGACATTCCTGTCAACCTCTACAAGGACTTACTGAGCAGAGAGAGCCC
CTGGGAAGCTGGAAAGCACCAGAAACAACAATGACTGAACTCTGCTCTGGGGGCCTTGTGGCTG
GCTATGCAGACCAGAGGGCAGGACAGGCAATGACTGACGCATCTTCCTGGCCACATACCCTCCA
ATCCACACGGGTTCTAGCTCAGGCTGGACTCCTGCCTCTCCTTTTTATGCTAGTGTACCAAAGA
AACTGAACATGTTACCTTTTATTTAAAAGTGTTACTAGCCCTGCCTGGGGCTCCTATACAAAAA
CAACACACAACCCAAA

hide sequence

RefSeq Acc Id:

XM_008773842 ⟹ XP_008772064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,763,908 - 12,766,476 (-)	NCBI
mRatBN7.2	20	12,761,747 - 12,768,451 (-)	NCBI

Sequence:

show sequence

GAGCAGACAGTGCTCTTAACTGCTGAGCCATCTTTCCAGCCCAAGTGTTAAGTTTTATTTGAAT
AAAATGAAATCACTAGTTTAGTTTTGTGAGACAGCGTTTTGTTATGTGGCTCAGGTGTCATGAG
GAGAACTCACTATCCTGCCTCCGATTTCCTCCTGCTAGGGTTCTAGATACATCTGATAATTGTA
TATTTATTTGTGTATTTATTTAGATACATCTGATAACTGATATTTATTTGTTTGGGGCTAGGGT
TTCACTATGTAACCCTAGCTGGCCTAGAACTCTCTCTGTTGACAAGACAAGTCTCGGACTTTCA
GAGATCTGCCTGCCTCTGCCTTTGGAGTGTTGCGAATGAAGACAGGCAGTACCACACCCAGTGG
TTGTCTTACTTTACACATTTGCTTACCACCTTTACTGTTCTCCCCAGTGGCTGAGCCATTTTAA
ATCTCCACAAAAACCGCATGAAAAAAATGTACGTTTCCATATCCTAGACAGCACACGTTACTGT
TTTGTTTGTATAACCTTTTAGTGAGCACAGGGACCTTTTAGAAGTGACCATTAAATGTCATCTC
CTCATCTTGGCTTCCCAGGTTAACTTACTTACCTTGGAGGTTCGTCTCAGGCATTATTTTCCAT
CAAGGAGCTGTTCTAGGTCGCGTGGTATTGAACTGTCTGGACCATGATGGACAGTGTCTTTGGT
TGGCTACAGGATCCCCAGCATTTATCAGATTGTTCGGCACACAGTAGGTCCTCAATAAATGGTT
AACTAATAGCATTTTTCTTTTCTACCAAATTTCTTTTTTTTTTTTTTTCCGGAGCTGGGGACCG
AACCCAGGGCCTTGAGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCTTTCT
ACCAAATTTCAAGTTCCTCTCCAGTCTGCTCGCTTGCTCCAGCATGGCTCTGAACCTTCTTCGG
TCGGATCCTCACTAAAGCGCACACTCAGGAGGATCACGACTGGAACTTGCACAAGATAGCTGGA
CTCCAGAGTTTTACAGGGTGTTGCCAGTAAAGCAGAGGCCGGCCGGAGGCCAGCCCAGCAAATC
GGCCCGCCCCTTGCTCGCCTCTTTGTGCTTCTTTTCATGGTCCGCCCCCGTGGCAAGCTCGTGG
GTTTTTGCTATTGGTTCTTCTCTAGATGATGTCAAACGACCAATTCTGATTGGCTACAAAACCT
CCCACGCCTCCATAGCAGCCACAACAACCGCCACGTGCTCTACCGTGGGACTTCCTTATTGGCT
AGCCGCCTCAACACACCTGGCCGGCCCGCTTTCTCTTCCCATTGGCTTTCCAGTCCCCAGGCTC
GGCTCCTCCGACGCTGATTGGTCCTCAGAGAGCGAGGCGGGGCTTGGGGCGGGTAAAGAGCGCG
GGTTTGCCGGCGCGCGCGCTGAAGATTTTTCGATGGCTGGGCAGAGGCTGGCGGCGGATTTCCT
GCAGGTGCCGGCGGTGACACGAGCCTACACCGCGGCCTGCGTCCTCACCACGGCCGCAGTGCTG
GAGCTCCTCAGCCCCTTCCAGCTCTACTTCAACCCGCATCTGGTGTTCCGGAAGTTCCAGGTCT
GGAGGCTCATCACTACCTTCCTCTTCTTCGGGCCCCTGGGATTCGGCTTCTTTTTCAACATGCT
CTTCGTGTTCCGCTACTGCCGCATGCTGGAGGAGGGTTCTTTCCGTGGCCGCAAGGCCGACTTC
GTTTTCATGTTTCTCTTCGGTGGTGTTCTTATGACTCTGCTGGGATTCCTGGGCAGCATGTTTT
TCCTGGGACAGGCCCTCATGGCCATGCTGGTCTATGTGTGGAGCCGTCGCAGCCCGCATGTGAG
GGTCAACTTCTTTGGCTTACTCAACTTCCAGGCGCCATTCCTGCCCTGGGCCCTCATGGGCTTC
TCGCTGCTTCTGGGCAACTCGGTTATCACAGACCTGCTAGGGATCATTGTGGGCCACATCTACT
ACTTCCTAGAAGATGTCTTTCCCAACCAGCCTGGAGGCAAGAGACTGCTGCTGACCCCTAGCTT
CTTGAAGCTACTACTAGATGACCCTCAGGAGGACCCCAATTACCTGCCCCTCCCTGAGGAGCAT
CCAGAGGCCTAACTGCAGCTCCTGGAACAGTAAGCGCACTCTGGTCAGCCCCAGGCTTTAGACA
GCACTCTATCCTTCCCCTCCACCTCAGCTCGAGCTGAGCAGCACTCGGAAGGCTGGGCCTCCCT
GCAGCCTTGGTGCCTCAGCCAGCAACACCATGCACTTCTCTGTATCGTCTCTCCGCTCAACCAC
AGTGACAGGACACGGAGCCCAGAGAGGCCTAAGACTGCCTAGAGATGCCCGGCAGAGTTCTGAA
CTACAGACCCAAGGACTCATCTTCACGCTGTCTGTCTGTCAGGGTCTTGATGGGGACCTCAGTC
CCAGTCATTAGAGCTGGTGCCATCCGCCTAGCCTGTCTTTGTCCTCACCTTCTCTAGCTGGTCC
CATGGACAAGTTTGGCTCTCTGCCATGCTAGTGAGCCCAGGGCCTTGAGCTCTATTTAAGCAGC
AGCCCGGGTACAGCAGAGGTAGTTCTGGGACATCCCATCTGTCTTGCAGCTGAAGGCCTGTGTG
GGCAGGTGTCCCTACCTGGTTTTCCTTGTTGGTATACATCTGCCCCACGGGGCTTACTCCTGAA
TGCCCACCCAACAGCATGGGAATTCCCCGTACCATTGCCTGTCATTTCTATGGTAACAAAAATG
TTTTCTACTGA

hide sequence

RefSeq Acc Id:

XM_039099084 ⟹ XP_038955012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,761,185 - 12,766,339 (-)	NCBI
mRatBN7.2	20	12,761,747 - 12,768,454 (-)	NCBI

RefSeq Acc Id:

XM_039099085 ⟹ XP_038955013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,753,926 - 12,766,339 (-)	NCBI
mRatBN7.2	20	12,754,490 - 12,768,454 (-)	NCBI

RefSeq Acc Id:

XM_039099086 ⟹ XP_038955014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,763,908 - 12,766,339 (-)	NCBI
mRatBN7.2	20	12,761,747 - 12,768,454 (-)	NCBI

RefSeq Acc Id:

XM_039099087 ⟹ XP_038955015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,763,908 - 12,766,478 (-)	NCBI
mRatBN7.2	20	12,761,747 - 12,768,451 (-)	NCBI

RefSeq Acc Id:

XM_039099089 ⟹ XP_038955017

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,763,908 - 12,766,476 (-)	NCBI
mRatBN7.2	20	12,761,747 - 12,768,453 (-)	NCBI

RefSeq Acc Id:

XM_063279523 ⟹ XP_063135593

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,763,908 - 12,766,478 (-)	NCBI

RefSeq Acc Id:

XM_063279524 ⟹ XP_063135594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,761,185 - 12,766,476 (-)	NCBI

RefSeq Acc Id:

XM_063279525 ⟹ XP_063135595

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,763,908 - 12,766,476 (-)	NCBI

RefSeq Acc Id:

XM_063279526 ⟹ XP_063135596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,761,185 - 12,766,478 (-)	NCBI

RefSeq Acc Id:

XM_063279527 ⟹ XP_063135597

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	12,763,908 - 12,766,478 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001103047	(Get FASTA)	NCBI Sequence Viewer
	XP_008772060	(Get FASTA)	NCBI Sequence Viewer
	XP_008772061	(Get FASTA)	NCBI Sequence Viewer
	XP_008772063	(Get FASTA)	NCBI Sequence Viewer
	XP_008772064	(Get FASTA)	NCBI Sequence Viewer
	XP_038955012	(Get FASTA)	NCBI Sequence Viewer
	XP_038955013	(Get FASTA)	NCBI Sequence Viewer
	XP_038955014	(Get FASTA)	NCBI Sequence Viewer
	XP_038955015	(Get FASTA)	NCBI Sequence Viewer
	XP_038955017	(Get FASTA)	NCBI Sequence Viewer
	XP_063135593	(Get FASTA)	NCBI Sequence Viewer
	XP_063135594	(Get FASTA)	NCBI Sequence Viewer
	XP_063135595	(Get FASTA)	NCBI Sequence Viewer
	XP_063135596	(Get FASTA)	NCBI Sequence Viewer
	XP_063135597	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67034	(Get FASTA)	NCBI Sequence Viewer
	EDL97173	(Get FASTA)	NCBI Sequence Viewer
	EDL97174	(Get FASTA)	NCBI Sequence Viewer
	EDL97175	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000029737
	ENSRNOP00000029737.4
	ENSRNOP00000085039
	ENSRNOP00000085039.1

RefSeq Acc Id:

NP_001103047 ⟸ NM_001109577

- UniProtKB:

G3V8X2 (UniProtKB/TrEMBL), A6JKF8 (UniProtKB/TrEMBL), B2RZ58 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGQRLAADFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFF
GPLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSMFFLGQALMAML
VYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVITDLLGIIVGHIYYFLEDVFPNQ
PGGKRLLLTPSFLKLLLDDPQEDPNYLPLPEEHPEA

hide sequence

Ensembl Acc Id:

ENSRNOP00000029737 ⟸ ENSRNOT00000038623

RefSeq Acc Id:	XP_038955013 ⟸ XM_039099085
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A2D0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955014 ⟸ XM_039099086
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038955012 ⟸ XM_039099084
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A2D0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008772061 ⟸ XM_008773839
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A2D0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSPASGVLHAPRPTAAGAPQPLPALLQPASGVPEVPGLEAHHYLPLLRAPGIRLLFQHALRVSW ATLAGWRWGEPGWGLCWASNGETEAQSTWHFLCQCCRFRYCRMLEEGSFRGRKADFVFMFLFGG VLMTLLGFLGSMFFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSV ITDLLGIIVGHIYYFLEDVFPNQPGGKRLLLTPSFLKLLLDDPQEDPNYLPLPEEHPEA hide sequence

RefSeq Acc Id:	XP_038955017 ⟸ XM_039099089
- Peptide Label:	isoform X6
- UniProtKB:	B2RZ58 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008772060 ⟸ XM_008773838
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A2D0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSPASGVLHAPRPTAAGAPQPLPALLQPASGVPEVPGLEAHHYLPLLRAPGIRLLFQHALRVSW ATLAGWRWGEPGWGLCWASNGETEAQSTWHFLCQCCRFRYCRMLEEGSFRGRKADFVFMFLFGG VLMTLLGFLGSMFFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSV ITDLLGIIVGHIYYFLEDVFPNQPGGKRLLLTPSFLKLLLDDPQEDPNYLPLPEEHPEA hide sequence

RefSeq Acc Id:	XP_008772064 ⟸ XM_008773842
- Peptide Label:	isoform X3
- UniProtKB:	B2RZ58 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGQRLAADFLQVPAVTRAYTAACVLTTAAVLELLSPFQLYFNPHLVFRKFQVWRLITTFLFFG PLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSMFFLGQALMAMLV YVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVITDLLGIIVGHIYYFLEDVFPNQP GGKRLLLTPSFLKLLLDDPQEDPNYLPLPEEHPEA hide sequence

RefSeq Acc Id:	XP_038955015 ⟸ XM_039099087
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K732 (UniProtKB/TrEMBL), B2RZ58 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008772063 ⟸ XM_008773841
- Peptide Label:	isoform X2
- UniProtKB:	G3V8X2 (UniProtKB/TrEMBL), A6JKF8 (UniProtKB/TrEMBL), B2RZ58 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGQRLAADFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFF GPLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSMFFLGQALMAML VYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVITDLLGIIVGHIYYFLEDVFPNQ PGGKRLLLTPSFLKLLLDDPQEDPNYLPLPEEHPEA hide sequence

Ensembl Acc Id:

ENSRNOP00000074042 ⟸ ENSRNOT00000086463

Ensembl Acc Id:

ENSRNOP00000085039 ⟸ ENSRNOT00000116934

RefSeq Acc Id:	XP_063135596 ⟸ XM_063279526
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K732 (UniProtKB/TrEMBL), B2RZ58 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135594 ⟸ XM_063279524
- Peptide Label:	isoform X3
- UniProtKB:	B2RZ58 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135597 ⟸ XM_063279527
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K732 (UniProtKB/TrEMBL), B2RZ58 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135593 ⟸ XM_063279523
- Peptide Label:	isoform X2
- UniProtKB:	A6JKF8 (UniProtKB/TrEMBL), G3V8X2 (UniProtKB/TrEMBL), B2RZ58 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135595 ⟸ XM_063279525
- Peptide Label:	isoform X3
- UniProtKB:	B2RZ58 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V8X2-F1-model_v2	AlphaFold	G3V8X2	1-228	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701530

Promoter ID:

EPDNEW_R12054

Type:

single initiation site

Name:

LOC103694875_1

Description:

derlin-3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	13,706,217 - 13,706,277	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1597373	AgrOrtholog
BioCyc Gene	G2FUF-4164	BioCyc
Ensembl Genes	ENSRNOG00000028243	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000038623	ENTREZGENE
	ENSRNOT00000038623.7	UniProtKB/TrEMBL
	ENSRNOT00000116934	ENTREZGENE
	ENSRNOT00000116934.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1540.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7303301	IMAGE-MGC_LOAD
InterPro	DER1	UniProtKB/TrEMBL
	Rhomboid-like_sf	UniProtKB/TrEMBL
KEGG Report	rno:690315	UniProtKB/TrEMBL
MGC_CLONE	MGC:189282	IMAGE-MGC_LOAD
NCBI Gene	690315	ENTREZGENE
PANTHER	DER1-LIKE PROTEIN, DERLIN	UniProtKB/TrEMBL
Pfam	DER1	UniProtKB/TrEMBL
PhenoGen	Derl3	PhenoGen
RatGTEx	ENSRNOG00000028243	RatGTEx
Superfamily-SCOP	SSF144091	UniProtKB/TrEMBL
UniProt	A0A0G2K732	ENTREZGENE
	A0A8I6A2D0	ENTREZGENE, UniProtKB/TrEMBL
	A6JKF8	ENTREZGENE, UniProtKB/TrEMBL
	B2RZ58	ENTREZGENE, UniProtKB/TrEMBL
	G3V8X2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Derl3	derlin 3	LOC103694875	derlin-3	Data merged from RGD:9125074	737654	PROVISIONAL
2014-08-25	LOC103694875	derlin-3			Symbol and Name status set to provisional	70820	PROVISIONAL
2012-07-16	Derl3	derlin 3	Derl3	Der1-like domain family, member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Derl3	Der1-like domain family, member 3	LOC690315	similar to Der1-like domain family, member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC690315	similar to Der1-like domain family, member 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)