Rpl23al8 (ribosomal protein L23A like 8) - Rat Genome Database

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Gene: Rpl23al8 (ribosomal protein L23A like 8) Rattus norvegicus
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Symbol: Rpl23al8
Name: ribosomal protein L23A like 8
RGD ID: 1597174
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN cytosolic ribosome (inferred); ribonucleoprotein complex (inferred); ribosomal subunit (inferred)
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L23a-like; large ribosomal subunit protein uL23-like; LOC299190; ribosomal protein L23A like 1; Rpl23al1; similar to 60S ribosomal protein L23a
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86109,382,515 - 109,382,953 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.26103,651,415 - 103,651,852 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6103,651,386 - 103,651,852 (-)EnsemblmRatBN7.2
Rnor_6.06107,500,155 - 107,501,547 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06118,039,899 - 118,044,068 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46108,058,141 - 108,058,607 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6101,481,199 - 101,482,591 (-)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Rpl23al8
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat


Expression

RNA-SEQ Expression

ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
2 1 5 1 3 4 3 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000050217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6103,651,386 - 103,651,852 (-)Ensembl
RefSeq Acc Id: XM_017594486   ⟹   XP_017449975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,382,515 - 109,382,953 (-)NCBI
mRatBN7.26103,651,415 - 103,651,852 (-)NCBI
Rnor_6.06107,500,155 - 107,501,547 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017449975 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000104767
  ENSRNOP00000104767.1
  ENSRNOP00000111134.1
RefSeq Acc Id: XP_017449975   ⟸   XM_017594486
- Sequence:

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-36845 BioCyc
Ensembl Genes ENSRNOG00000063643 Ensembl
  ENSRNOG00000086989 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040470.6 UniProtKB/TrEMBL
  ENSRNOT00000050217 ENTREZGENE
  ENSRNOT00000050217.5 UniProtKB/TrEMBL
NCBI Gene 299190 ENTREZGENE
PhenoGen Rpl23al8 PhenoGen
RatGTEx ENSRNOG00000063643 RatGTEx
  ENSRNOG00000086989 RatGTEx
UniProt A0ABK0L592_RAT UniProtKB/TrEMBL
  A0ABK0LXH7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rpl23al8  ribosomal protein L23A like 8  Rpl23al1  ribosomal protein L23A like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rpl23al1  ribosomal protein L23A like 1  LOC299190  similar to 60S ribosomal protein L23a  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC299190  similar to 60S ribosomal protein L23a      Symbol and Name status set to provisional 70820 PROVISIONAL