Glb1 (galactosidase, beta 1) - Rat Genome Database

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Gene: Glb1 (galactosidase, beta 1) Rattus norvegicus
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Symbol: Glb1
Name: galactosidase, beta 1
RGD ID: 1597145
Description: Enables beta-galactosidase activity and galactoside binding activity. Involved in galactose catabolic process; response to Thyroglobulin triiodothyronine; and response to cortisone. Predicted to be located in Golgi apparatus and extracellular space. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in GM1 gangliosidosis (multiple) and mucopolysaccharidosis IV (multiple). Orthologous to human GLB1 (galactosidase beta 1); PARTICIPATES IN Fabry disease pathway; galactose metabolic pathway; galactosemia pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: beta-galactosidase; galactosidase, beta 1 (mapped); Glb1_mapped
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,963,718 - 123,036,326 (+)NCBIGRCr8
mRatBN7.28114,085,508 - 114,158,127 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,085,508 - 114,158,127 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,702,274 - 119,775,293 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08117,901,534 - 117,974,533 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,744,315 - 115,817,349 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,439,328 - 122,511,939 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,439,328 - 122,511,939 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,752,146 - 121,824,793 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,791,550 - 118,864,281 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8113,332,049 - 113,404,466 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Object Symbol
Species
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Original Reference(s)
Glb1RatD-bifunctional protein deficiency  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: D-bifunctional protein deficiencyClinVarPMID:10338095 more ...
Glb1Ratgenetic disease  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:10338095 more ...
Glb1RatGM1 gangliosidosis  ISOGLB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10338095 more ...
Glb1RatGM1 gangliosidosis  ISOGLB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10338095 more ...
Glb1RatGM1 gangliosidosis type 1  ISOGLB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10338095 more ...
Glb1RatGM1 gangliosidosis type 1  ISOGLB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10338095 more ...
Glb1RatGM1 gangliosidosis type 2  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: GM1 gangliosidosis type 2ClinVarPMID:10338095 more ...
Glb1RatGM1 gangliosidosis type 3  ISOGLB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10338095 more ...
Glb1Rathigh grade glioma  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: EpendymomaClinVar 
Glb1Ratintellectual disability  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868 and PMID:28492532
Glb1RatJoubert syndrome 9  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Joubert syndrome 9ClinVarPMID:10338095 more ...
Glb1Ratmucopolysaccharidosis IV  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Morquio syndromeClinVar 
Glb1Ratmucopolysaccharidosis type IVB  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Mucopolysaccharidosis and MPS-IV-BClinVarPMID:10338095 more ...
Glb1Ratneuronal ceroid lipofuscinosis 6A  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neuronal ceroid lipofuscinosis 6ClinVarPMID:10338095 more ...
Glb1Ratosteogenesis imperfecta type 7  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Osteogenesis imperfecta type 7ClinVarPMID:28492532
Glb1Ratprogressive familial intrahepatic cholestasis  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Progressive familial intrahepatic cholestasisClinVarPMID:16941474 more ...
Glb1RatPseudo-Zellweger Syndrome  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Pseudo Zellweger syndromeClinVarPMID:10338095 more ...
Glb1Ratschizophrenia  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVar 
Glb1Ratspastic ataxia  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic ataxiaClinVarPMID:10841810 more ...
Glb1Ratspondyloepiphyseal dysplasia  ISOGLB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Spondyloepiphyseal dysplasiaClinVarPMID:10841810 more ...
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Object Symbol
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Original Reference(s)
Glb1Ratatopic dermatitis  ISOGLB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23042114
Glb1Ratbone development disease  ISOGLB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:7586649
Glb1Ratcontact dermatitis  ISOGLB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25724174
Glb1RatCorneal Opacity  ISOGLB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:817853
Glb1RatGM1 gangliosidosis  ISOGLB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Glb1Ratmucopolysaccharidosis IV  ISOGLB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:1928092 and PMID:7586649
Glb1Ratosteochondrodysplasia  ISOGLB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:817853
Object Symbol
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Original Reference(s)
Glb1RatGM1 gangliosidosis  ISSGlb1 (Mus musculus)13592920 MouseDO 

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Original Reference(s)
Glb1Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of GLB1 mRNA]CTDPMID:31150632
Glb1Rat1,1-dichloroethene increases expressionISOGlb1 (Mus musculus)6480464vinylidene chloride results in increased expression of GLB1 mRNACTDPMID:26682919
Glb1Rat1,2-dimethylhydrazine multiple interactionsISOGlb1 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of GLB1 mRNA]CTDPMID:22206623
Glb1Rat1,2-dimethylhydrazine increases expressionISOGlb1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of GLB1 mRNACTDPMID:22206623
Glb1Rat17alpha-ethynylestradiol affects expressionISOGlb1 (Mus musculus)6480464Ethinyl Estradiol affects the expression of GLB1 mRNACTDPMID:17555576
Glb1Rat17beta-estradiol decreases expressionISOGLB1 (Homo sapiens)6480464Estradiol results in decreased expression of GLB1 proteinCTDPMID:17075048
Glb1Rat17beta-estradiol affects expressionISOGlb1 (Mus musculus)6480464Estradiol affects the expression of GLB1 mRNACTDPMID:39298647
Glb1Rat17beta-estradiol increases expressionISOGlb1 (Mus musculus)6480464Estradiol results in increased expression of GLB1 mRNACTDPMID:15289156
Glb1Rat17beta-estradiol multiple interactionsISOGLB1 (Homo sapiens)6480464Estradiol inhibits the reaction [Hydrogen Peroxide results in increased expression of GLB1 protein] and Fulvestrant inhibits the reaction [Estradiol results in decreased expression of GLB1 protein]CTDPMID:17075048 and PMID:36567042
Glb1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOGLB1 (Homo sapiens)64804642 more ...CTDPMID:31675489
Glb1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOGlb1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of GLB1 mRNACTDPMID:21570461
Glb1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of GLB1 mRNACTDPMID:34747641
Glb1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOGlb1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of GLB1 mRNACTDPMID:33956508
Glb1Rat2,4,6-tribromophenol decreases expressionISOGLB1 (Homo sapiens)64804642 more ...CTDPMID:31675489
Glb1Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of GLB1 mRNACTDPMID:21346803
Glb1Rat3,4-methylenedioxymethamphetamine increases expressionISOGlb1 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of GLB1 mRNACTDPMID:20188158
Glb1Rat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of GLB1 proteinCTDPMID:34915118
Glb1Rat4,4'-sulfonyldiphenol decreases methylationISOGlb1 (Mus musculus)6480464bisphenol S results in decreased methylation of GLB1 exonCTDPMID:33297965
Glb1Rat4,4'-sulfonyldiphenol affects methylationISOGlb1 (Mus musculus)6480464bisphenol S affects the methylation of GLB1 geneCTDPMID:31683443
Glb1Rat4,4'-sulfonyldiphenol affects expressionISOGLB1 (Homo sapiens)6480464bisphenol S affects the expression of GLB1 proteinCTDPMID:31945527

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Biological Process
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Object Symbol
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Original Reference(s)
Glb1Ratcarbohydrate metabolic process involved_inISOGLB1 (Homo sapiens)1624291 PMID:11927518RGDPMID:11927518
Glb1Ratcarbohydrate metabolic process involved_inIEAUniProtKB:P16278 and ensembl:ENSP000003069201600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratcarbohydrate metabolic process involved_inIEAInterPro:IPR001944 and InterPro:IPR0198011600115GO_REF:0000002InterProGO_REF:0000002
Glb1Ratgalactose catabolic process  IDA 1598981 RGD 
Glb1Ratgalactose catabolic process involved_inIBAPANTHER:PTN000602923 and Glb1 (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
Glb1Ratganglioside catabolic process involved_inISOGlb1 (Mus musculus)1624291 PMID:31720227RGDPMID:31720227
Glb1Ratganglioside catabolic process involved_inIEAUniProtKB:P23780 and ensembl:ENSMUSP000000558031600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratganglioside catabolic process involved_inIEAUniProtKB:P16278 and ensembl:ENSP000003069201600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratganglioside catabolic process involved_inISOGLB1 (Homo sapiens)1624291 PMID:31720227RGDPMID:31720227
Glb1Ratglycoprotein catabolic process involved_inISOGlb1 (Mus musculus)1624291 PMID:31720227RGDPMID:31720227
Glb1Ratglycoprotein catabolic process involved_inIEAUniProtKB:P23780 and ensembl:ENSMUSP000000558031600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratglycoprotein catabolic process involved_inIEAUniProtKB:P16278 and ensembl:ENSP000003069201600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratglycoprotein catabolic process involved_inISOGLB1 (Homo sapiens)1624291 PMID:31720227RGDPMID:31720227
Glb1Ratkeratan sulfate proteoglycan catabolic process involved_inISOGlb1 (Mus musculus)1624291 PMID:31720227RGDPMID:31720227
Glb1Ratkeratan sulfate proteoglycan catabolic process involved_inIEAUniProtKB:P23780 and ensembl:ENSMUSP000000558031600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratkeratan sulfate proteoglycan catabolic process involved_inISOGLB1 (Homo sapiens)1624291 PMID:31720227RGDPMID:31720227
Glb1Ratkeratan sulfate proteoglycan catabolic process involved_inIEAUniProtKB:P16278 and ensembl:ENSP000003069201600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratresponse to cortisone  IEP 12910456 RGD 
Glb1Ratresponse to Thyroglobulin triiodothyronine  IEP 12910455 RGD 
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Cellular Component
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Object Symbol
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Original Reference(s)
Glb1Ratcytoplasm located_inISOGLB1 (Homo sapiens)1624291 PMID:11927518RGDPMID:11927518
Glb1Ratcytoplasm located_inIEAUniProtKB:P16278 and ensembl:ENSP000003069201600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratcytoplasm located_inIEAUniProtKB:P23780 and ensembl:ENSMUSP000000558031600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratcytoplasm located_inISOGlb1 (Mus musculus)1624291 PMID:11551927RGDPMID:11551927
Glb1Ratextracellular space located_inIEAUniProtKB:P23780 and ensembl:ENSMUSP000000558031600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratextracellular space located_inISOGlb1 (Mus musculus)1624291 PMID:19710420RGDPMID:19710420
Glb1RatGolgi apparatus located_inISOGLB1 (Homo sapiens)1624291 RGDGO_REF:0000052
Glb1RatGolgi apparatus located_inIEAUniProtKB:P16278 and ensembl:ENSP000003069201600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratintracellular membrane-bounded organelle located_inISOGLB1 (Homo sapiens)1624291 RGDGO_REF:0000052
Glb1Ratintracellular membrane-bounded organelle located_inIEAUniProtKB:P16278 and ensembl:ENSP000003069201600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratlysosome is_active_inISOGLB1 (Homo sapiens)1624291 PMID:8112731RGDPMID:8112731
Glb1Ratlysosome located_inIEAUniProtKB:P23780 and ensembl:ENSMUSP000000558031600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratlysosome is_active_inIEAUniProtKB:P16278 and ensembl:ENSP000003069201600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratlysosome located_inISOGlb1 (Mus musculus)1624291 PMID:29514215RGDPMID:29514215
Glb1Ratmembrane located_inIEAGO:00066891600115GO_REF:0000108GOCGO_REF:0000108
Glb1Ratvacuole is_active_inIBAMGI:88151 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Molecular Function
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Object Symbol
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Original Reference(s)
Glb1Ratbeta-galactosidase activity  IDA 1598981 RGD 
Glb1Ratbeta-galactosidase activity enablesIEAUniProtKB:P23780 and ensembl:ENSMUSP000000558031600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratbeta-galactosidase activity enablesIEAInterPro:IPR0262831600115GO_REF:0000002InterProGO_REF:0000002
Glb1Ratbeta-galactosidase activity enablesIEAUniProtKB:P16278 and ensembl:ENSP000003069201600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Ratbeta-galactosidase activity enablesISOGlb1 (Mus musculus)1624291MGI:3579514 PMID:11551927 more ...RGDPMID:11551927 more ...
Glb1Ratbeta-galactosidase activity enablesIBAFB:FBgn0001089 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Glb1Ratbeta-galactosidase activity enablesIEAEC:3.2.1.231600115GO_REF:0000003UniProtGO_REF:0000003
Glb1Ratbeta-galactosidase activity enablesISOGLB1 (Homo sapiens)1624291 PMID:11927518 more ...RGDPMID:11927518 more ...
Glb1Ratbeta-galactosidase activity  IMP 1625507 RGD 
Glb1Ratbeta-galactosidase activity  IDA 1625498 RGD 
Glb1Ratgalactoside binding  IDA 1625498 RGD 
Glb1Rathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Glb1Rathydrolase activity enablesISOGlb1 (Mus musculus)1624291 PMID:19710420RGDPMID:19710420
Glb1Rathydrolase activity enablesIEAUniProtKB:P23780 and ensembl:ENSMUSP000000558031600115GO_REF:0000107EnsemblGO_REF:0000107
Glb1Rathydrolase activity, acting on glycosyl bonds enablesIEAUniProtKB-KW:KW-03261600115GO_REF:0000043UniProtGO_REF:0000043
Glb1Rathydrolase activity, hydrolyzing O-glycosyl compounds enablesIEAInterPro:IPR001944 and InterPro:IPR0198011600115GO_REF:0000002InterProGO_REF:0000002
Glb1Ratprotein binding enablesISOGLB1 (Homo sapiens)1624291UniProtKB:P15311 more ...RGDPMID:15498789 more ...
Glb1Ratprotein homodimerization activity enablesISOGLB1 (Homo sapiens)1624291UniProtKB:P16278 and PMID:22128166RGDPMID:22128166
Glb1Ratprotein homodimerization activity enablesIEAUniProtKB:P16278 and ensembl:ENSP000003069201600115GO_REF:0000107EnsemblGO_REF:0000107
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Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Glb1Ratgalactose metabolic pathway  IEA 6907045 KEGGrno:00052
Glb1Ratganglioside metabolic pathway  IEA 6907045 KEGGrno:00604
Glb1Ratglycosaminoglycan degradation pathway  IEA 6907045 KEGGrno:00531
Glb1Ratsphingolipid metabolic pathway  IEA 6907045 KEGGrno:00600

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#
Reference Title
Reference Citation
1. Genetically controlled variation of "acid" beta-galactosidase detected in Rattus norvegicus by isoelectric focusing. Douglas TC, etal., Genetics. 1982 Mar;100(3):455-73.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Effect of cortisone or L-triiodothyronine administration to pregnant rats on the activity of fetal intestinal disaccharidases and lysosomal acid beta-galactosidase. Jumawan J, etal., Biol Neonate. 1977;32(3-4):211-7.
4. Hormonal control of postnatal development of ileal neuraminidase and acid beta-galactosidase. Leeper LL and Henning SJ, Biol Neonate. 1983;44(1):28-35.
5. Acrosomal and lysosomal isoenzymes of beta-galactosidase and N-acetyl-beta-glucosaminidase in rat testis. Majumder GC and Turkington RW, Biochemistry. 1974 Jul 2;13(14):2857-64.
6. New GLB1 mutation in siblings with Morquio type B disease presenting with mental regression. Mayer FQ, etal., Mol Genet Metab. 2009 Mar;96(3):148. doi: 10.1016/j.ymgme.2008.11.159. Epub 2008 Dec 16.
7. beta-galactosidase gene mutations affecting the lysosomal enzyme and the elastin-binding protein in GM1-gangliosidosis patients with cardiac involvement. Morrone A, etal., Hum Mutat. 2000;15(4):354-66.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Mutation analyses in 17 patients with deficiency in acid beta-galactosidase: three novel point mutations and high correlation of mutation W273L with Morquio disease type B. Paschke E, etal., Hum Genet. 2001 Aug;109(2):159-66.
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
12. Alterations in certain lysosomal glycohydrolases and cathepsins in rats on dexamethasone administration. Rajashree S and Puvanakrishnan R, Mol Cell Biochem. 1996 Jan 26;154(2):165-70.
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Identification of 14 novel GLB1 mutations, including five deletions, in 19 patients with GM1 gangliosidosis from South America. Santamaria R, etal., Clin Genet. 2007 Mar;71(3):273-9.
16. Rat brain contains high levels of mannose-6-phosphorylated glycoproteins including lysosomal enzymes and palmitoyl-protein thioesterase, an enzyme implicated in infantile neuronal lipofuscinosis. Sleat DE, etal., J Biol Chem. 1996 Aug 9;271(32):19191-8.
17. Systemic AAV9 gene transfer in adult GM1 gangliosidosis mice reduces lysosomal storage in CNS and extends lifespan. Weismann CM, etal., Hum Mol Genet. 2015 Aug 1;24(15):4353-64. doi: 10.1093/hmg/ddv168. Epub 2015 May 10.
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PMID:1914521   PMID:4830244   PMID:7203014   PMID:11927518   PMID:19056867   PMID:19710420   PMID:20849834   PMID:22128166   PMID:23376485   PMID:23533145   PMID:24737316   PMID:25936995  
PMID:29514215   PMID:32423114  



Glb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,963,718 - 123,036,326 (+)NCBIGRCr8
mRatBN7.28114,085,508 - 114,158,127 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,085,508 - 114,158,127 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,702,274 - 119,775,293 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08117,901,534 - 117,974,533 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,744,315 - 115,817,349 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,439,328 - 122,511,939 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,439,328 - 122,511,939 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,752,146 - 121,824,793 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,791,550 - 118,864,281 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8113,332,049 - 113,404,466 (+)NCBICelera
Cytogenetic Map8q32NCBI
GLB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,961,108 - 33,097,146 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,996,609 - 33,097,202 (-)EnsemblGRCh38hg38GRCh38
GRCh37333,002,600 - 33,138,638 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,013,104 - 33,113,698 (-)NCBINCBI36Build 36hg18NCBI36
Build 34333,013,234 - 33,113,632NCBI
Celera332,980,743 - 33,081,754 (-)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,977,821 - 33,078,667 (-)NCBIHuRef
CHM1_1332,988,097 - 33,088,744 (-)NCBICHM1_1
T2T-CHM13v2.0332,962,888 - 33,098,917 (-)NCBIT2T-CHM13v2.0
Glb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,230,146 - 114,303,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,230,144 - 114,303,966 (+)EnsemblGRCm39 Ensembl
GRCm389114,401,078 - 114,474,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,401,076 - 114,474,898 (+)EnsemblGRCm38mm10GRCm38
MGSCv379114,310,237 - 114,383,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369114,249,817 - 114,323,075 (+)NCBIMGSCv36mm8
Celera9114,872,858 - 114,948,660 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.4NCBI
Glb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955421231,076 - 312,500 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955421230,957 - 311,504 (-)NCBIChiLan1.0ChiLan1.0
GLB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,943,061 - 33,083,071 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,947,825 - 33,088,024 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,892,039 - 33,031,959 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1333,231,208 - 33,336,804 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,231,209 - 33,336,804 (-)Ensemblpanpan1.1panPan2
GLB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,721,768 - 3,814,209 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,732,040 - 3,814,191 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,776,393 - 3,858,177 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0233,992,209 - 4,074,051 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl233,992,152 - 4,074,337 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,826,915 - 3,908,721 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,954,230 - 4,036,008 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,927,851 - 4,009,519 (+)NCBIUU_Cfam_GSD_1.0
Glb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,209,844 - 190,301,836 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647323,348,416 - 23,440,196 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647323,348,431 - 23,440,271 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,878,612 - 18,953,146 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,878,407 - 18,978,999 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GLB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,480,895 - 77,592,130 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,480,598 - 77,592,120 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604150,859,532 - 50,971,400 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,970,652 - 11,111,722 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478810,970,657 - 11,110,839 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Glb1
413 total Variants

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:81
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000013632
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
1599689Iddm24Insulin dependent diabetes mellitus QTL 244.720.001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)8112834440118649220Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat

1 to 10 of 18 rows
RH130801  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,157,310 - 114,157,530 (+)MAPPERmRatBN7.2
Rnor_6.08122,511,123 - 122,511,342NCBIRnor6.0
Rnor_5.08121,823,977 - 121,824,196UniSTSRnor5.0
RGSC_v3.48118,863,465 - 118,863,684UniSTSRGSC3.4
Celera8113,403,642 - 113,403,861UniSTS
RH 3.4 Map81203.8UniSTS
Cytogenetic Map8q32UniSTS
RH134983  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,095,665 - 114,095,863 (+)MAPPERmRatBN7.2
Rnor_6.08122,449,487 - 122,449,684NCBIRnor6.0
Rnor_5.08121,762,341 - 121,762,538UniSTSRnor5.0
RGSC_v3.48118,801,709 - 118,801,906UniSTSRGSC3.4
Celera8113,342,195 - 113,342,392UniSTS
RH 3.4 Map81202.0UniSTS
Cytogenetic Map8q32UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


RefSeq Transcripts NM_001108192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000013632   ⟹   ENSRNOP00000013632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,085,508 - 114,158,127 (+)Ensembl
Rnor_6.0 Ensembl8122,439,328 - 122,511,939 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095071   ⟹   ENSRNOP00000080740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,100,165 - 114,158,127 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112983   ⟹   ENSRNOP00000080639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,085,508 - 114,158,127 (+)Ensembl
RefSeq Acc Id: NM_001108192   ⟹   NP_001101662
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,963,718 - 123,036,326 (+)NCBI
mRatBN7.28114,085,508 - 114,158,127 (+)NCBI
Rnor_6.08122,439,328 - 122,511,939 (+)NCBI
Rnor_5.08121,752,146 - 121,824,793 (+)NCBI
RGSC_v3.48118,791,550 - 118,864,281 (+)RGD
Celera8113,332,049 - 113,404,466 (+)RGD
Sequence:
Protein RefSeqs NP_001101662 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76992 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013632
  ENSRNOP00000013632.5
  ENSRNOP00000080639.1
  ENSRNOP00000080740.1
RefSeq Acc Id: NP_001101662   ⟸   NM_001108192
- Peptide Label: precursor
- UniProtKB: D3ZUM4 (UniProtKB/TrEMBL),   A6I3N5 (UniProtKB/TrEMBL),   A0A8I6G4Z3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013632   ⟸   ENSRNOT00000013632
Ensembl Acc Id: ENSRNOP00000080740   ⟸   ENSRNOT00000095071
Ensembl Acc Id: ENSRNOP00000080639   ⟸   ENSRNOT00000112983
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUM4-F1-model_v2 AlphaFold D3ZUM4 1-647 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696354
Promoter ID:EPDNEW_R6879
Type:initiation region
Name:Glb1_1
Description:galactosidase, beta 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08122,439,360 - 122,439,420EPDNEW


1 to 33 of 33 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-28928 BioCyc
Ensembl Genes ENSRNOG00000010196 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013632 ENTREZGENE
  ENSRNOT00000013632.6 UniProtKB/TrEMBL
  ENSRNOT00000095071.1 UniProtKB/TrEMBL
  ENSRNOT00000112983.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
  Glycosidases UniProtKB/TrEMBL
InterPro B-gal_1-like UniProtKB/TrEMBL
  BetaGal1-like_ABD1 UniProtKB/TrEMBL
  BetaGal_gal-bd UniProtKB/TrEMBL
  Galactose-bd-like UniProtKB/TrEMBL
  Gly_Hdrlase_35_cat UniProtKB/TrEMBL
  Glyco_hydro_35_CS UniProtKB/TrEMBL
  Glyco_hydro_catalytic_core UniProtKB/TrEMBL
  Glycoside_Hdrlase_35 UniProtKB/TrEMBL
KEGG Report rno:316033 UniProtKB/TrEMBL
NCBI Gene 316033 ENTREZGENE
PANTHER Glyco_hydro_35 UniProtKB/TrEMBL
Pfam BetaGal_ABD_1 UniProtKB/TrEMBL
  BetaGal_gal-bd UniProtKB/TrEMBL
  Glyco_hydro_35 UniProtKB/TrEMBL
PhenoGen Glb1 PhenoGen
PIRSF B-gal UniProtKB/TrEMBL
PRINTS GLHYDRLASE35 UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F35 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010196 RatGTEx
Superfamily-SCOP Gal_bind_like UniProtKB/TrEMBL
  Glyco_hydro_cat UniProtKB/TrEMBL
UniProt A0A8I5ZR79_RAT UniProtKB/TrEMBL
  A0A8I6G4Z3 ENTREZGENE, UniProtKB/TrEMBL
  A6I3N5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZUM4 ENTREZGENE, UniProtKB/TrEMBL
1 to 33 of 33 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Glb1  galactosidase, beta 1   Glb1_predicted  galactosidase, beta 1 (predicted)  'predicted' is removed 2292626 APPROVED
2007-04-11 Glb1_predicted  galactosidase, beta 1 (predicted)  Glb1_mapped  galactosidase, beta 1 (mapped)  Data merged from RGD:2699 737654 APPROVED
2007-01-09 Glb1_predicted  galactosidase, beta 1 (predicted)  Glb1  galactosidase, beta 1  Gene type set to predicted; nomenclature changed appropriately 1299863 APPROVED
2007-01-09   galactosidase, beta 1  Glb1  galactosidase, beta 1 (mapped)  Name updated 1299863 APPROVED
2006-11-20 Glb1  galactosidase, beta 1 (mapped)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 Glb1_mapped  galactosidase, beta 1 (mapped)      Symbol and Name updated 1556543 APPROVED
2002-06-10 Glb1  Galactosidase, beta 1      Symbol and Name status set to approved 70586 APPROVED