Dgat2l6 (diacylglycerol O-acyltransferase 2-like 6) - Rat Genome Database

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Pathways
Gene: Dgat2l6 (diacylglycerol O-acyltransferase 2-like 6) Rattus norvegicus
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Symbol: Dgat2l6
Name: diacylglycerol O-acyltransferase 2-like 6
RGD ID: 1596935
Description: Predicted to enable diacylglycerol O-acyltransferase activity. Predicted to be involved in monoacylglycerol biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DGAT2L6 (diacylglycerol O-acyltransferase 2 like 6); INTERACTS WITH bisphenol A; copper atom; copper(0).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: diacylglycerol O-acyltransferase 2-like protein 6; hypothetical protein LOC678749; LOC678749; similar to diacylglycerol O-acyltransferase 2 like 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X69,654,519 - 69,678,049 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX69,654,519 - 69,678,049 (+)EnsemblGRCr8
mRatBN7.2X65,614,430 - 65,637,962 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX65,614,430 - 65,637,962 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX67,097,843 - 67,121,379 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X70,598,229 - 70,621,767 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X68,159,131 - 68,182,674 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X70,354,357 - 70,377,887 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX70,354,360 - 70,377,825 (+)Ensemblrn6Rnor6.0
Rnor_5.0X71,226,309 - 71,250,455 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X88,516,406 - 88,539,958 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX65,973,837 - 65,997,431 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15671038   PMID:28420705  


Genomics

Comparative Map Data
Dgat2l6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X69,654,519 - 69,678,049 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX69,654,519 - 69,678,049 (+)EnsemblGRCr8
mRatBN7.2X65,614,430 - 65,637,962 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX65,614,430 - 65,637,962 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX67,097,843 - 67,121,379 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X70,598,229 - 70,621,767 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X68,159,131 - 68,182,674 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X70,354,357 - 70,377,887 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX70,354,360 - 70,377,825 (+)Ensemblrn6Rnor6.0
Rnor_5.0X71,226,309 - 71,250,455 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X88,516,406 - 88,539,958 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX65,973,837 - 65,997,431 (+)NCBICelera
Cytogenetic MapXq22NCBI
DGAT2L6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X70,177,483 - 70,205,704 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX70,177,483 - 70,205,704 (+)Ensemblhg38GRCh38
GRCh37X69,397,333 - 69,425,554 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X69,314,061 - 69,342,278 (+)NCBIBuild 36Build 36hg18NCBI36
CeleraX69,750,703 - 69,778,926 (+)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX63,218,725 - 63,246,915 (+)NCBIHuRef
CHM1_1X69,290,951 - 69,319,173 (+)NCBICHM1_1
T2T-CHM13v2.0X68,610,847 - 68,639,072 (+)NCBIT2T-CHM13v2.0
Dgat2l6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X99,568,444 - 99,589,714 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX99,561,597 - 99,583,428 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm39 EnsemblX99,568,444 - 99,589,750 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X100,524,838 - 100,546,108 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX100,524,838 - 100,546,144 (+)Ensemblmm10GRCm38
MGSCv37X97,720,177 - 97,741,447 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X96,742,703 - 96,748,319 (+)NCBIMGSCv36mm8
CeleraX87,451,189 - 87,471,651 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX43.72NCBI
Dgat2l6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554759,708,402 - 9,731,900 (+)Ensembl
ChiLan1.0NW_0049554759,708,402 - 9,733,712 (+)NCBIChiLan1.0ChiLan1.0
DGAT2L6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X69,854,374 - 69,882,525 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X69,857,976 - 69,886,127 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X59,445,558 - 59,473,714 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X69,504,786 - 69,532,813 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX69,504,786 - 69,532,813 (+)EnsemblpanPan2panpan1.1
DGAT2L6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X54,622,521 - 54,657,141 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX54,622,317 - 54,684,231 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX45,448,300 - 45,483,222 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X55,588,599 - 55,623,577 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX55,588,452 - 55,651,935 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X53,557,652 - 53,592,560 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X54,888,447 - 54,923,357 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X54,815,616 - 54,850,534 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dgat2l6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X47,500,161 - 47,507,809 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367621,262,870 - 1,281,432 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367621,262,374 - 1,268,979 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DGAT2L6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX56,216,066 - 56,239,196 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X56,212,494 - 56,239,641 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X63,424,500 - 63,434,204 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DGAT2L6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X60,018,508 - 60,048,540 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX60,041,748 - 60,047,814 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660651,871,124 - 1,899,623 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dgat2l6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624903107,211 - 130,231 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624903107,211 - 130,304 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Dgat2l6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X58,273,952 - 58,297,105 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dgat2l6
59 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:40
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000029046
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 3 14 13 17 5 16 5 6 41 22 6 5 12 12

Sequence


Ensembl Acc Id: ENSRNOT00000029046   ⟹   ENSRNOP00000037695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX69,654,519 - 69,678,049 (+)Ensembl
mRatBN7.2 EnsemblX65,614,430 - 65,637,962 (+)Ensembl
Rnor_6.0 EnsemblX70,354,362 - 70,377,825 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076852   ⟹   ENSRNOP00000068054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX65,614,430 - 65,637,685 (+)Ensembl
Rnor_6.0 EnsemblX70,354,360 - 70,377,610 (+)Ensembl
RefSeq Acc Id: NM_001109370   ⟹   NP_001102840
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,654,519 - 69,678,049 (+)NCBI
mRatBN7.2X65,614,430 - 65,637,962 (+)NCBI
Rnor_6.0X70,354,357 - 70,377,887 (+)NCBI
Rnor_5.0X71,226,309 - 71,250,455 (+)NCBI
RGSC_v3.4X88,516,406 - 88,539,958 (+)RGD
CeleraX65,973,837 - 65,997,431 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102840 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL95937 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037695
  ENSRNOP00000037695.4
RefSeq Acc Id: NP_001102840   ⟸   NM_001109370
- UniProtKB: D3ZTG7 (UniProtKB/TrEMBL),   A6IQ76 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000037695   ⟸   ENSRNOT00000029046
Ensembl Acc Id: ENSRNOP00000068054   ⟸   ENSRNOT00000076852

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTG7-F1-model_v2 AlphaFold D3ZTG7 1-337 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596935 AgrOrtholog
BioCyc Gene G2FUF-2132 BioCyc
Ensembl Genes ENSRNOG00000038046 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029046 ENTREZGENE
  ENSRNOT00000029046.7 UniProtKB/TrEMBL
InterPro DAGAT UniProtKB/TrEMBL
KEGG Report rno:678749 UniProtKB/TrEMBL
NCBI Gene 678749 ENTREZGENE
PANTHER DIACYLGLYCEROL O-ACYLTRANSFERASE UniProtKB/TrEMBL
  DIACYLGLYCEROL O-ACYLTRANSFERASE 2-LIKE PROTEIN 6 UniProtKB/TrEMBL
Pfam DAGAT UniProtKB/TrEMBL
PhenoGen Dgat2l6 PhenoGen
RatGTEx ENSRNOG00000038046 RatGTEx
UniProt A6IQ76 ENTREZGENE, UniProtKB/TrEMBL
  D3ZTG7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-21 Dgat2l6  diacylglycerol O-acyltransferase 2-like 6  LOC678749  similar to diacylglycerol O-acyltransferase 2 like 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC678749  similar to diacylglycerol O-acyltransferase 2 like 6  LOC684239  similar to diacylglycerol O-acyltransferase 2 like 6  Data merged from RGD:1592708 1643240 APPROVED
2006-11-20 LOC678749  similar to diacylglycerol O-acyltransferase 2 like 6      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC684239  similar to diacylglycerol O-acyltransferase 2 like 6      Symbol and Name status set to provisional 70820 PROVISIONAL