Ncaph (non-SMC condensin I complex, subunit H) - Rat Genome Database

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Gene: Ncaph (non-SMC condensin I complex, subunit H) Rattus norvegicus
Analyze
Symbol: Ncaph
Name: non-SMC condensin I complex, subunit H
RGD ID: 1596799
Description: Predicted to enable chromatin binding activity. Predicted to be involved in nuclear chromosome segregation; positive regulation of chromosome condensation; and regulation of chromosome segregation. Predicted to act upstream of or within meiotic chromosome condensation and meiotic chromosome segregation. Predicted to be located in condensed nuclear chromosome. Predicted to be part of condensin complex. Predicted to be active in chromosome and nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 23. Orthologous to human NCAPH (non-SMC condensin I complex subunit H); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: condensin complex subunit 2; LOC680089; similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,825,271 - 134,852,502 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3134,825,271 - 134,852,502 (-)EnsemblGRCr8
mRatBN7.23114,371,937 - 114,399,178 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,371,941 - 114,399,180 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3118,263,906 - 118,290,791 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,859,455 - 126,886,339 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,519,832 - 124,546,720 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,583,798 - 119,611,148 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,583,648 - 119,611,136 (-)Ensemblrn6Rnor6.0
Rnor_5.03126,108,995 - 126,136,392 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43114,651,251 - 114,679,447 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3113,212,390 - 113,239,664 (-)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-palmitoylglycerol  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP,ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antimycin A  (ISO)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
deguelin  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
diethyl maleate  (EXP)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
erythromycin estolate  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
geraniol  (ISO)
haloperidol  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (EXP)
lidocaine  (EXP)
lucanthone  (ISO)
menadione  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
monosodium L-glutamate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
okadaic acid  (ISO)
orphenadrine  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phytoestrogen  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
pyrimidifen  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
senecionine  (EXP)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetrahydropalmatine  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (EXP)
topotecan  (EXP,ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA,ISO)
condensed nuclear chromosome  (IEA,ISO)
condensin complex  (IBA,IEA,ISO)
cytoplasm  (IEA)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA,ISO)

Molecular Function
chromatin binding  (IBA,IEA,ISO)
protein binding  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. NCAPH is negatively associated with Mcl‑1 in non‑small cell lung cancer. Xiong Q, etal., Mol Med Rep. 2020 Oct;22(4):2916-2924. doi: 10.3892/mmr.2020.11359. Epub 2020 Jul 28.
Additional References at PubMed
PMID:11136719   PMID:11694586   PMID:12477932   PMID:19946888   PMID:21795393   PMID:23531880   PMID:25474630   PMID:25961503   PMID:27737959  


Genomics

Comparative Map Data
Ncaph
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,825,271 - 134,852,502 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3134,825,271 - 134,852,502 (-)EnsemblGRCr8
mRatBN7.23114,371,937 - 114,399,178 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,371,941 - 114,399,180 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3118,263,906 - 118,290,791 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,859,455 - 126,886,339 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,519,832 - 124,546,720 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,583,798 - 119,611,148 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,583,648 - 119,611,136 (-)Ensemblrn6Rnor6.0
Rnor_5.03126,108,995 - 126,136,392 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43114,651,251 - 114,679,447 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3113,212,390 - 113,239,664 (-)NCBICelera
Cytogenetic Map3q36NCBI
NCAPH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,335,766 - 96,377,091 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,335,734 - 96,377,091 (+)Ensemblhg38GRCh38
GRCh37297,001,504 - 97,042,829 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,365,211 - 96,405,001 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34296,423,364 - 96,461,456NCBI
Celera291,442,671 - 91,482,461 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef290,962,712 - 91,004,067 (+)NCBIHuRef
CHM1_1297,005,816 - 97,047,166 (+)NCBICHM1_1
T2T-CHM13v2.0296,842,375 - 96,883,701 (+)NCBIT2T-CHM13v2.0
Ncaph
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392126,945,729 - 126,975,857 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2126,945,729 - 126,975,874 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382127,103,809 - 127,133,954 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,103,809 - 127,133,954 (-)Ensemblmm10GRCm38
MGSCv372126,929,545 - 126,959,690 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362126,795,270 - 126,825,346 (-)NCBIMGSCv36mm8
Celera2128,333,925 - 128,367,247 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
Ncaph
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,878,883 - 3,909,146 (+)Ensembl
ChiLan1.0NW_0049554703,878,896 - 3,909,087 (+)NCBIChiLan1.0ChiLan1.0
NCAPH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21231,932,502 - 31,973,179 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A31,931,343 - 31,975,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A102,939,357 - 102,980,091 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,258,412 - 97,299,912 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,258,412 - 97,299,906 (+)EnsemblpanPan2panpan1.1
NCAPH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,428,886 - 34,463,140 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1734,420,060 - 34,462,666 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1734,199,697 - 34,233,619 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01735,190,883 - 35,234,717 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,199,736 - 35,234,715 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,324,093 - 34,363,755 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,377,182 - 34,422,599 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,595,536 - 34,638,901 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ncaph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,172,516 - 83,216,031 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936744440,956 - 468,972 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936744440,958 - 468,964 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAPH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,852,392 - 46,893,013 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1346,852,388 - 46,893,008 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2348,999,151 - 49,092,637 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCAPH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114755,840 - 792,053 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14755,897 - 792,154 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041168,182,504 - 168,218,685 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncaph
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,411,970 - 2,444,446 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247492,411,952 - 2,439,981 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ncaph
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15105,933,507 - 105,954,297 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ncaph
107 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:46
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000016157
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3122654702136118980Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)3116582412136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)3125814931139636791Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat

Markers in Region
RH132580  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23114,372,098 - 114,372,300 (+)MAPPERmRatBN7.2
Rnor_6.03119,583,962 - 119,584,163NCBIRnor6.0
Rnor_5.03126,109,159 - 126,109,360UniSTSRnor5.0
RGSC_v3.43114,651,413 - 114,651,614UniSTSRGSC3.4
Celera3113,212,554 - 113,212,755UniSTS
RH 3.4 Map3998.2UniSTS
Cytogenetic Map3q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 90 59 6 353 190 11 141 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016157   ⟹   ENSRNOP00000016157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,825,271 - 134,852,502 (-)Ensembl
mRatBN7.2 Ensembl3114,371,941 - 114,399,180 (-)Ensembl
Rnor_6.0 Ensembl3119,583,648 - 119,611,136 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094988   ⟹   ENSRNOP00000083211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,825,271 - 134,852,241 (-)Ensembl
mRatBN7.2 Ensembl3114,371,941 - 114,393,916 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000166660   ⟹   ENSRNOP00000109035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,825,271 - 134,852,502 (-)Ensembl
RefSeq Acc Id: NM_001402050   ⟹   NP_001388979
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,825,271 - 134,852,502 (-)NCBI
mRatBN7.23114,371,937 - 114,399,178 (-)NCBI
RefSeq Acc Id: XM_056985377   ⟹   XP_056841357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,825,271 - 134,851,993 (-)NCBI
mRatBN7.23114,371,954 - 114,398,876 (-)NCBI
RefSeq Acc Id: XM_063284540   ⟹   XP_063140610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,825,271 - 134,852,259 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001388979 (Get FASTA)   NCBI Sequence Viewer  
  XP_056841357 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140610 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016157
  ENSRNOP00000016157.7
  ENSRNOP00000083211
  ENSRNOP00000083211.2
  ENSRNOP00000109035.1
Ensembl Acc Id: ENSRNOP00000016157   ⟸   ENSRNOT00000016157
Ensembl Acc Id: ENSRNOP00000083211   ⟸   ENSRNOT00000094988
RefSeq Acc Id: NP_001388979   ⟸   NM_001402050
- UniProtKB: D4A8M7 (UniProtKB/TrEMBL),   A6HQ00 (UniProtKB/TrEMBL),   A0A8I5ZVL6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_056841357   ⟸   XM_056985377
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZVL6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140610   ⟸   XM_063284540
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZVL6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109035   ⟸   ENSRNOT00000166660

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A8M7-F1-model_v2 AlphaFold D4A8M7 1-732 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692410
Promoter ID:EPDNEW_R2921
Type:initiation region
Name:Ncaph_1
Description:non-SMC condensin I complex, subunit H
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03119,611,113 - 119,611,173EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596799 AgrOrtholog
BioCyc Gene G2FUF-48008 BioCyc
Ensembl Genes ENSRNOG00000012051 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016157 ENTREZGENE
  ENSRNOT00000016157.9 UniProtKB/TrEMBL
  ENSRNOT00000094988 ENTREZGENE
  ENSRNOT00000094988.2 UniProtKB/TrEMBL
  ENSRNOT00000166660.1 UniProtKB/TrEMBL
InterPro Condensin_barren_su2 UniProtKB/TrEMBL
NCBI Gene 680089 ENTREZGENE
PANTHER CONDENSIN COMPLEX SUBUNIT 2 UniProtKB/TrEMBL
  PTHR13108 UniProtKB/TrEMBL
Pfam Barren UniProtKB/TrEMBL
PhenoGen Ncaph PhenoGen
PIRSF Condensin_H UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012051 RatGTEx
UniProt A0A8I5ZVL6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LE31_RAT UniProtKB/TrEMBL
  A6HQ00 ENTREZGENE, UniProtKB/TrEMBL
  D4A8M7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Ncaph  non-SMC condensin I complex, subunit H  LOC680089  similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC680089  similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)  LOC688088  similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)  Data merged from RGD:1593575 1643240 APPROVED
2006-11-20 LOC680089  similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC688088  similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)      Symbol and Name status set to provisional 70820 PROVISIONAL