Ildr2 (immunoglobulin-like domain containing receptor 2) - Rat Genome Database

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Gene: Ildr2 (immunoglobulin-like domain containing receptor 2) Rattus norvegicus
Analyze
Symbol: Ildr2
Name: immunoglobulin-like domain containing receptor 2
RGD ID: 1596420
Description: Predicted to be involved in negative regulation of T cell activation; pancreas development; and regulation of RNA splicing. Predicted to act upstream of or within several processes, including homeostasis of number of cells within a tissue; insulin secretion; and response to glucose. Predicted to be located in tight junction. Predicted to be active in membrane. Orthologous to human ILDR2 (immunoglobulin like domain containing receptor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: immunoglobulin-like domain-containing receptor 2; LOC103693676; LOC685277; similar to liver-specific bHLH-Zip transcription factor; uncharacterized LOC103693676
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81381,051,723 - 81,113,590 (+)NCBIGRCr8
mRatBN7.21378,518,770 - 78,580,627 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1378,518,802 - 78,576,924 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01384,474,191 - 84,532,347 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1384,474,319 - 84,530,031 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01389,348,944 - 89,410,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41382,011,398 - 82,052,932 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1378,228,056 - 78,289,499 (+)NCBICelera
Cytogenetic Map13q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18654634  


Genomics

Comparative Map Data
Ildr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81381,051,723 - 81,113,590 (+)NCBIGRCr8
mRatBN7.21378,518,770 - 78,580,627 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1378,518,802 - 78,576,924 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01384,474,191 - 84,532,347 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1384,474,319 - 84,530,031 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01389,348,944 - 89,410,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41382,011,398 - 82,052,932 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1378,228,056 - 78,289,499 (+)NCBICelera
Cytogenetic Map13q23NCBI
ILDR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,908,187 - 166,975,540 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,895,711 - 166,975,540 (-)EnsemblGRCh38hg38GRCh38
GRCh371166,877,424 - 166,944,777 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,154,620 - 165,211,185 (-)NCBINCBI36Build 36hg18NCBI36
Build 341163,619,653 - 163,676,219NCBI
Celera1139,993,130 - 140,049,695 (-)NCBICelera
Cytogenetic Map1q24.1NCBI
HuRef1138,129,484 - 138,191,475 (-)NCBIHuRef
CHM1_11168,304,168 - 168,366,288 (-)NCBICHM1_1
T2T-CHM13v2.01166,254,012 - 166,321,373 (-)NCBIT2T-CHM13v2.0
Ildr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391166,081,630 - 166,144,405 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1166,081,708 - 166,144,392 (+)EnsemblGRCm39 Ensembl
GRCm381166,254,060 - 166,316,832 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,254,139 - 166,316,823 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,184,270 - 168,246,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,179,805 - 168,241,647 (+)NCBIMGSCv36mm8
Celera1168,697,278 - 168,760,312 (+)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map173.61NCBI
Ildr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554629,953,452 - 10,012,518 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554629,953,393 - 10,016,339 (+)NCBIChiLan1.0ChiLan1.0
ILDR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,801,198 - 82,880,947 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1182,469,593 - 82,549,346 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01142,315,984 - 142,395,729 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,121,014 - 146,181,843 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,125,919 - 146,181,822 (-)Ensemblpanpan1.1panPan2
ILDR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1731,409,015 - 31,469,741 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl731,408,814 - 31,464,943 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha730,947,348 - 31,008,404 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0731,230,404 - 31,291,529 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl731,230,500 - 31,286,980 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1731,068,394 - 31,129,469 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0731,100,414 - 31,161,452 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0731,338,795 - 31,399,899 (+)NCBIUU_Cfam_GSD_1.0
Ildr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344101,091,917 - 101,147,448 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648118,939,043 - 18,991,235 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648118,938,658 - 18,994,197 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ILDR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl484,056,730 - 84,117,106 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1484,056,736 - 84,117,123 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ILDR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12562,058,441 - 62,120,031 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2562,075,658 - 62,113,853 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605563,795,065 - 63,861,693 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ildr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248264,993,274 - 5,037,627 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248264,991,792 - 5,051,574 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ildr2
298 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:391
Count of miRNA genes:90
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000031367, ENSRNOT00000064168, ENSRNOT00000072244, ENSRNOT00000072897, ENSRNOT00000073696, ENSRNOT00000074954
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)137402391880753406Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)137486211785581182Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat

Markers in Region
AI852300  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21378,580,353 - 78,580,472 (+)MAPPERmRatBN7.2
Rnor_6.01384,535,973 - 84,536,091NCBIRnor6.0
Rnor_5.01389,410,224 - 89,410,342UniSTSRnor5.0
RGSC_v3.41382,058,621 - 82,058,739UniSTSRGSC3.4
Celera1378,289,226 - 78,289,344UniSTS
Cytogenetic Map13q23UniSTS
RH140030  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21378,575,335 - 78,575,531 (+)MAPPERmRatBN7.2
Rnor_6.01384,530,785 - 84,530,980NCBIRnor6.0
Rnor_5.01389,405,036 - 89,405,231UniSTSRnor5.0
RGSC_v3.41382,053,686 - 82,053,881UniSTSRGSC3.4
Celera1378,284,199 - 78,284,394UniSTS
Cytogenetic Map13q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 1 1 66 2 18
Low 40 32 22 2 22 7 7 8 33 23 8 7
Below cutoff 3 24 18 15 18 1 4 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_002724859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001845849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000031367   ⟹   ENSRNOP00000036628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1378,518,816 - 78,576,924 (+)Ensembl
Rnor_6.0 Ensembl1384,474,319 - 84,530,031 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000064168   ⟹   ENSRNOP00000063419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1378,518,816 - 78,576,924 (+)Ensembl
Rnor_6.0 Ensembl1384,474,362 - 84,530,031 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000072244   ⟹   ENSRNOP00000064707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1378,518,816 - 78,574,577 (+)Ensembl
Rnor_6.0 Ensembl1384,474,362 - 84,530,026 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000072897   ⟹   ENSRNOP00000065769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1378,518,816 - 78,576,924 (+)Ensembl
Rnor_6.0 Ensembl1384,474,362 - 84,530,031 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000073696   ⟹   ENSRNOP00000064015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1378,518,816 - 78,576,924 (+)Ensembl
Rnor_6.0 Ensembl1384,474,362 - 84,530,031 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000074954   ⟹   ENSRNOP00000066529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1378,518,816 - 78,576,924 (+)Ensembl
Rnor_6.0 Ensembl1384,474,362 - 84,530,031 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112105   ⟹   ENSRNOP00000080698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1378,518,816 - 78,574,608 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115320   ⟹   ENSRNOP00000084258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1378,535,101 - 78,576,924 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117890   ⟹   ENSRNOP00000094889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1378,518,802 - 78,536,557 (+)Ensembl
RefSeq Acc Id: XM_008769713   ⟹   XP_008767935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81381,051,723 - 81,113,590 (+)NCBI
mRatBN7.21378,518,770 - 78,580,627 (+)NCBI
Rnor_6.01384,474,191 - 84,532,347 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769716   ⟹   XP_008767938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81381,052,570 - 81,113,590 (+)NCBI
mRatBN7.21378,529,812 - 78,580,627 (+)NCBI
Rnor_6.01384,486,152 - 84,532,347 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598996   ⟹   XP_017454485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81381,051,961 - 81,113,590 (+)NCBI
mRatBN7.21378,518,996 - 78,580,627 (+)NCBI
Rnor_6.01384,474,595 - 84,532,347 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598997   ⟹   XP_017454486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81381,060,434 - 81,113,590 (+)NCBI
mRatBN7.21378,527,513 - 78,580,627 (+)NCBI
Rnor_6.01384,480,927 - 84,532,347 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091405   ⟹   XP_038947333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81381,092,491 - 81,113,590 (+)NCBI
mRatBN7.21378,559,528 - 78,580,627 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008767935   ⟸   XM_008769713
- Peptide Label: isoform X1
- UniProtKB: D3ZGJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767938   ⟸   XM_008769716
- Peptide Label: isoform X2
- UniProtKB: D3ZGJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454485   ⟸   XM_017598996
- Peptide Label: isoform X2
- UniProtKB: D3ZGJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454486   ⟸   XM_017598997
- Peptide Label: isoform X2
- UniProtKB: D3ZGJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000036628   ⟸   ENSRNOT00000031367
RefSeq Acc Id: ENSRNOP00000065769   ⟸   ENSRNOT00000072897
RefSeq Acc Id: ENSRNOP00000064015   ⟸   ENSRNOT00000073696
RefSeq Acc Id: ENSRNOP00000064707   ⟸   ENSRNOT00000072244
RefSeq Acc Id: ENSRNOP00000066529   ⟸   ENSRNOT00000074954
RefSeq Acc Id: ENSRNOP00000063419   ⟸   ENSRNOT00000064168
RefSeq Acc Id: XP_038947333   ⟸   XM_039091405
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000084258   ⟸   ENSRNOT00000115320
RefSeq Acc Id: ENSRNOP00000094889   ⟸   ENSRNOT00000117890
RefSeq Acc Id: ENSRNOP00000080698   ⟸   ENSRNOT00000112105
Protein Domains
Immunoglobulin subtype

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZGJ1-F1-model_v2 AlphaFold D3ZGJ1 1-659 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698971
Promoter ID:EPDNEW_R9493
Type:initiation region
Name:Ildr2_1
Description:immunoglobulin-like domain containing receptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01384,474,231 - 84,474,291EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596420 AgrOrtholog
BioCyc Gene G2FUF-17548 BioCyc
Ensembl Genes ENSRNOG00000025151 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031367.6 UniProtKB/TrEMBL
  ENSRNOT00000064168.4 UniProtKB/TrEMBL
  ENSRNOT00000072244.3 UniProtKB/TrEMBL
  ENSRNOT00000072897.4 UniProtKB/TrEMBL
  ENSRNOT00000073696.4 UniProtKB/TrEMBL
  ENSRNOT00000074954.4 UniProtKB/TrEMBL
  ENSRNOT00000112105.1 UniProtKB/TrEMBL
  ENSRNOT00000115320.1 UniProtKB/TrEMBL
  ENSRNOT00000117890.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  LISCH7 UniProtKB/TrEMBL
NCBI Gene 685277 ENTREZGENE
PANTHER IMMUNOGLOBULIN-LIKE DOMAIN-CONTAINING RECEPTOR 2 UniProtKB/TrEMBL
  TRANSMEMBRANE AND IMMUNOGLOBULIN DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam LSR UniProtKB/TrEMBL
PhenoGen Ildr2 PhenoGen
RatGTEx ENSRNOG00000025151 RatGTEx
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8I5ZQ66_RAT UniProtKB/TrEMBL
  A0A8I5ZWU5_RAT UniProtKB/TrEMBL
  A0A8I6GKX9_RAT UniProtKB/TrEMBL
  D3ZGJ1 ENTREZGENE, UniProtKB/TrEMBL
  F1M2C7_RAT UniProtKB/TrEMBL
  M0R3U3_RAT UniProtKB/TrEMBL
  M0R5N5_RAT UniProtKB/TrEMBL
  M0R8H3_RAT UniProtKB/TrEMBL
  M0RAH9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ildr2  immunoglobulin-like domain containing receptor 2  LOC103693676  uncharacterized LOC103693676  Data merged from RGD:9330758 737654 PROVISIONAL
2014-08-25 LOC103693676  uncharacterized LOC103693676      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 Ildr2  immunoglobulin-like domain containing receptor 2  LOC686794  similar to liver-specific bHLH-Zip transcription factor  Data merged from RGD:1593668 1643240 APPROVED
2010-04-21 Ildr2  immunoglobulin-like domain containing receptor 2  LOC685277  similar to liver-specific bHLH-Zip transcription factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685277  similar to liver-specific bHLH-Zip transcription factor      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686794  similar to liver-specific bHLH-Zip transcription factor      Symbol and Name status set to provisional 70820 PROVISIONAL