Advanced Search (OLGA)

Gene: Zfp709l1 (zinc finger protein 709-like 1) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

Zfp709l1

Name:

zinc finger protein 709-like 1

RGD ID:

1596088

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; dioxygen.

Type:

protein-coding (Ensembl: lncRNA)

RefSeq Status:

PROVISIONAL

Previously known as:

LOC100909526; LOC690419; similar to zinc finger protein 709; zinc finger protein 433-like; zinc finger protein 709-like; zinc finger protein 878; Zinki

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	8,328,854 - 8,359,100 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	8,328,861 - 8,338,418 (-)	Ensembl				GRCr8
GRCr8 Ensembl	7	8,340,507 - 8,353,078 (-)	Ensembl				GRCr8
mRatBN7.2	7	7,683,807 - 7,708,257 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	7,668,997 - 7,780,109 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	10,582,749 - 10,602,086 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	12,458,410 - 12,477,747 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	10,308,008 - 10,327,283 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	10,412,577 - 10,436,946 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	10,418,602 - 10,430,992 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	10,568,260 - 10,607,832 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	9,159,486 - 9,178,619 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	5,890,106 - 5,914,405 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

acrylamide (EXP)

dioxygen (EXP)

ethanol (EXP)

gentamycin (EXP)

ketoconazole (EXP)

paracetamol (EXP)

trichloroethene (EXP)

triticonazole (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19193899

Genomics

Variants

Variants in Zfp709l1
104 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	18
Count of miRNA genes:	9
Interacting mature miRNAs:	9
Transcripts:	ENSRNOT00000043099, ENSRNOT00000047433
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat

Markers in Region

AI170370

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	7	10,757,201 - 10,757,323	NCBI	Rnor5.0
Rnor_5.0	7	10,514,780 - 10,514,901	NCBI	Rnor5.0
Rnor_5.0	7	10,588,694 - 10,588,816	NCBI	Rnor5.0
RGSC_v3.4	7	9,159,606 - 9,159,727	UniSTS	RGSC3.4
RGSC_v3.4	7	9,230,234 - 9,230,354	UniSTS	RGSC3.4
Celera	7	5,966,143 - 5,966,263	UniSTS
Celera	7	5,895,233 - 5,895,354	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	90	89	58	92	58	6	353	192	11	144	79	88	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001163063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001838720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001838721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001844242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001844243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001844244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001844245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001844246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_355238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_593260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_593261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000047433 ⟹ ENSRNOP00000051405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	7,689,592 - 7,780,109 (-)	Ensembl
Rnor_6.0 Ensembl	7	10,418,602 - 10,430,992 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000063989 ⟹ ENSRNOP00000063560

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	7,668,997 - 7,708,014 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086920 ⟹ ENSRNOP00000075050

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	8,328,861 - 8,338,418 (-)	Ensembl
mRatBN7.2 Ensembl	7	7,678,081 - 7,708,014 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094718 ⟹ ENSRNOP00000081680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	7,681,964 - 7,708,014 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101824 ⟹ ENSRNOP00000097778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	7,757,808 - 7,780,109 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104041 ⟹ ENSRNOP00000089425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	7,678,081 - 7,708,242 (-)	Ensembl

RefSeq Acc Id:

NM_001163063 ⟹ NP_001156535

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,339,672 - 8,358,803 (-)	NCBI
mRatBN7.2	7	7,688,889 - 7,708,020 (-)	NCBI
Rnor_6.0	7	10,417,584 - 10,436,717 (-)	NCBI
Rnor_5.0	7	10,568,260 - 10,607,832 (-)	NCBI
RGSC_v3.4	7	9,159,486 - 9,178,619 (-)	RGD

Sequence:

show sequence

GAAGTCTCTCCTCGGTCCGTGCTCTGGGCTGGGACCCTGCTTCCCACAGCTGTGAGAAGAGCGG
GGTGAGGTCAGAATCCGCGCTATGGCTGCAGTGACCTATGAGGATGTGCACGTGAACTTCACCC
ATGAAGAGTGGGCTTTGCTGGATCCTTTCCAAAAGAGTCTCTACAAAGATGTGATGCTGGAGAC
CTACTGGAACCTCACTGCTATAGGATACAAATTGGAAGACCTGAATAGTGAGGAACACTCTCCA
CGCTCTAGAAGATATGAAAGACATAATATCTGTCACTCTGGGTATAAACCTTGTGAACGTAAAG
GATATGGAAAGAAGCAATGTACCTTTGCAAGTAAAAGATTTCTTCAAATATATGAAAGCATCCA
TACTGAAGGGAATCCGTATGAATGTAAACAATGCAGTCAAATCTTTGCAAATTTATATCATCTT
CAAAAACATGAAAAAAAACATACCAGAGAAAAACTATATGAATGTAATCACTGTGGTAAAGCCT
TTCCAAGTCGCAATTCTCTTCAAATACACAACAGAACTCATACAGGAGAGAAACCCTATGATTG
CAACCAATGTGGTAAAGCATTTACATGTAGCAGTAATCTTTTACTACACAAAAGAACTCATACA
GGAGAGAAACCCTATGATTGTAATGACTGTGGTAAAGCATTTGCAAGTAGCAGTAATCTTCAAA
TTCATAAAAGAAAGCACACTGGAGAGAAACCCTATGGATGTAATCAGTGTGGTAAAGCCTTTGC
ATATAGCAATGCTCTTCAAAAACATGAAAGAAGTCATACTAGAGAGAAAATCTATGAGTGTAAT
CATTGTGGTAAAGCTTTTGCACGTCGTAGAAGTCTTCAAAATCATGAAGAACATCATACTCTTG
AAAAACCATATGAATGTAGTCAATGTGGTAAAGCCTTTGCATATAGCAGTAATCTTTATATACA
TGAAAGAAGTCATACTGGAGAAAAGCCATTCAAATGTCCTCAATGTGGTAAAGCCTTTCCAAGT
CACAGTTCTCTTCAAATACATGAAAGAACTCATACAGGAGAAAAACCCTATGACTGTAATGAAT
GTGGTAAAGCATTCGCATGTCGCAGTAATCTTCTACTACACAAAAGAACTCATACAGGAGAAAA
ACCCTATCATTGCATTAAATGTGATAAAGCATTTGCATGTAGCAGTAGTCTTCAAAAACATGAA
AAAACTCACACTGGAGAGAAACCTTATAAATGTAATCAGTGTGGTAAAGCCTTTGCACGTCGAA
GCGATCTGTATATACATGTAAGAATCCATACTGGAGAGAAACCATATAAGTGTAGTCAATGTGG
AAAAGCATTTGTACATTGCATTAGTCTTCAGAGGCATGAACGAACTCACACTGGAGAGAAACCT
TATGAGTGTAATCAATGTGGTAAAGCCTTTACACGTCGCTTTAGTCTTCAAGTACATGAAAGAA
GTCATAGTGGAGAGAAACCTTATGAGTGTAATCAGTGTGGTAAAGCCTTTGCAAGTCGTAGTAG
TCTTCGATATCATAGAAAACACCATACTGTTAAGAAACCAAATTAACCAGTGTGGTAAAGCCTG
TTGGAATCACCTTCAAACACATGAAAGAAATCATACTGGATAGAAACTATGCGTATAGTCAATG
TGGACAAGCCTTTATATATCACAGTAGTCTTCTAAATCACAAAACCAATGTCATATGGAGAGAA
ACCCTACAAATGTAATTGATGCAGTAAGCTTTGGCATGTAAGTATAATATTCAGACATATCAAA
AAACTCATACTGGAGAGAAACCTTGTGAATGTGGTCAAGTGATAATGCCTCTGCATGTTATGGT
CTTCAAAGGCATGAGAGAATTCCTACTGGTTAGAAACACCCTGAATCCAATAAATGCAGTAAGC
CTTATGCACACATTTTTCCCACTGAGTGATGTCACAGGGAATCATATAAGATTAGTGGAATCAT
TTTATCATCAAAATATCGTCTTGTTTACAAATTGTCATCCAAGAATAGAGGAACACAGAATAAT
TTGAACAATAAAACTTGCAAATGAAAATGATAATAATACTGCCATCATTTTTATGGGTCACTTT
ATTCTGAGAAATACTACTTGCTCTTAACAGTTTCTCAGAAGCACAAATGCGTGACAGATAAGTG
TCTCAGTGACTTAAGGTGGTTGCTGCTAAGCTAATGACCTGAGTTTATATGTAATGTGGAAACT
CACATTACTCATGCAAGTTTTTCTGATTTTTACAGTTGGGCTGTGTCATATGCACACACACATA
ATGGCACATATATTCAAAAATATTTTTGACAGTAAGTAATGGCCAATGATTTCACTCAGCAGTT
GAAGGCACTTGTTGCAAAACTGGACTACCTGTGTTTGATTGCTACAACTCTGCTAGAGGAAATA
GGGAATAGATATCTGTAAGTTGTCTTCTGACTTGCACATGCACAACATAGCACCAGTGTATATA
CACAGATAAAAATTATTATAGGTGAAAATAAAGAAAATAACCAAAGTATTGAGAATACAAATGA
TTTACCAGTCATAATAAAAGCATTCTAGTATTCCAAGAAA

hide sequence

RefSeq Acc Id:

XM_006240830 ⟹ XP_006240892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,328,854 - 8,358,853 (-)	NCBI
mRatBN7.2	7	7,683,807 - 7,708,070 (-)	NCBI
Rnor_6.0	7	10,412,577 - 10,436,946 (-)	NCBI
Rnor_5.0	7	10,568,260 - 10,607,832 (-)	NCBI

Sequence:

show sequence

ACTAAGTGCAGGGTTGACTTTGCAGTCCAGGTGAAAGTTATGCAATGCCAGTCTCCACTCTGTG
CCTGGGGTGGAATGTAGGGCTGTGCTGTGTTCCTTCACAGCACTCTGTCTCTAAGGGAGCTGCT
CCTGTCACTCAAGCGTCACTCGCTAATCAGGGCCTCGAGGCGGAACATCAGTCGGAATAGAGGC
GGGAACTTCCGGTCTGCCTTGCCGCTGGTTGACTGAGGAAGTCTCTCCTCGGTCCGTGCTCTGG
GCTGGGACCCTGCTTCCCACAGCTGTGAGAAGAGCGGGGTGAGGTCAGAATCCGCGCTATGGCT
GCAGTGACCTATGAGGATGTGCACGTGAACTTCACCCATGAAGAGTGGGCTTTGCTGGATCCTT
TCCAAAAGAGTCTCTACAAAGATGTGATGCTGGAGACCTACTGGAACCTCACTGCTATAGGATA
CAAATTGGAAGACCTGAATAGTGAGGAACACTCTCCACGCTCTAGAAGATATGAAAGGTTTACA
GAATTGTCAGGGCTACTGGAAAAATTGCGGATGGAGGTTGCAGAACTTGGGAAACTACACGCAT
TGGAAAAGGGAGAATCAAAAGCCTCAGTACAGCACAGGAGGAGCTTGCCTGGAGCCTTCTGGAC
CCAGGAACCTAGTAGCCATGAGGGATCCATCTGGTTTCTGCCTGCACCCAAAGCTGAAAGCCAG
TCTCCAGCAGTGCTGACACATCAGAGAACAGAGGTAAGGCCACTACTTCCGACCCGCCTGGAGC
CCTCAGAACACAGAACCCAGGAGCAGTCTGGGACAGGATCCTTCCAGGTTTTGCCTGCACCCAG
AGGTAACCTGGTCCCACAGCTTCCCCTGGGGGGAAGAGTGGGAATCTCAGAGGTATAGGCCATC
CTGGGAGCGCAGGGAAGATCACAACTTCTGCTGGCATTCCTGGTCCATGAAGAACCTGTCTGGA
AACCTCAGGAAACAGGAACCTAGGAGCAATCTGGGGTAGGATCCTTACGGTTACTGCCTGCGCC
CGGCCCTGTGACACAGTTCTCTGGACTCAGGCCCTGCTGGCAGAAACCTGGTTTCCAGAAGTGT
TGACACACAGGCTTACAGGAGGGTCAAGCCACTGTCAGAGACAGCAA

hide sequence

RefSeq Acc Id:

XM_008765131 ⟹ XP_008763353

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,328,854 - 8,359,100 (-)	NCBI
mRatBN7.2	7	7,683,807 - 7,708,257 (-)	NCBI
Rnor_6.0	7	10,412,577 - 10,436,937 (-)	NCBI

Sequence:

show sequence

AGGGTTGACTTTGCAGTCCAGGTGAAAGTTATGCAATGCCAGTCTCCACTCTGTGCCTGGGGTG
GAATGTAGGGCTGTGCTGTGTTCCTTCACAGCACTCTGTCTCTAAGGGAGCTGCTCCTGTCACT
CAAGCGTCACTCGCTAATCAGGGCCTCGAGGCGGAACATCAGTCGGAATAGAGGCGGGAACTTC
CGGTCTGCCTTGCCGCTGGTTGACTGAGGAAGTCTCTCCTCGGTCCGTGCTCTGGGCTGGGACC
CTGCTTCCCACAGCTGTGAGAAGAGCGGGGTGAGGTCAGAATCCGCGCTATGGCTGCAGTGACC
TATGAGGATGTGCACGTGAACTTCACCCATGAAGAGTGGGCTTTGCTGGATCCTTTCCAAAAGA
GTCTCTACAAAGATGTGATGCTGGAGACCTACTGGAACCTCACTGCTATAGGATACAAATTGGA
AGACCTGAATAGTGAGGAACACTCTCCACGCTCTAGAAGATATGAAAGGTTTACAGAATTGTCA
GGGCTACTGGAAAAATTGCGGATGGAGGTTGCAGAACTTGGGAAACTACACGCATTGGAAAAGG
GAGAATCAAAAGCCTCAGTACAGGAGGAGCTTGCCTGGAGCCTTCTGGACCCAGGAACCTAGTA
GCCATGAGGGATCCATCTGGTTTCTGCCTGCACCCAAAGCTGAAAGCCAGTCTCCAGCAGTGCT
GACACATCAGAGAACAGAGGTAAGGCCACTACTTCCGACCCGCCTGGAGCCCTCAGAACACAGA
ACCCAGGAGCAGTCTGGGACAGGATCCTTCCAGGTTTTGCCTGCACCCAGAGGTAACCTGGTCC
CACAGCTTCCCCTGGGGGGAAGAGTGGGAATCTCAGAGGTATAGGCCATCCTGGGAGCGCAGGG
AAGATCACAACTTCTGCTGGCATTCCTGGTCCATGAAGAACCTGTCTGGAAACCTCAGGAAACA
GGAACCTAGGAGCAATCTGGGGTAGGATCCTTACGGTTACTGCCTGCGCCCGGCCCTGTGACAC
AGTTCTCTGGACTCAGGCCCTGCTGGCAGAAACCTGGTTTCCAGAAGTGTTGACACACAGGCTT
ACAGGAGGGTCAAGCCACTGTCAGAGACAGCAA

hide sequence

RefSeq Acc Id:

XR_001838720

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,328,854 - 8,358,853 (-)	NCBI
mRatBN7.2	7	7,683,807 - 7,708,070 (-)	NCBI
Rnor_6.0	7	10,412,577 - 10,436,936 (-)	NCBI

Sequence:

show sequence

GGGTTGACTTTGCAGTCCAGGTGAAAGTTATGCAATGCCAGTCTCCACTCTGTGCCTGGGGTGG
AATGTAGGGCTGTGCTGTGTTCCTTCACAGCACTCTGTCTCTAAGGGAGCTGCTCCTGTCACTC
AAGCGTCACTCGCTAATCAGGGCCTCGAGGCGGAACATCAGTCGGAATAGAGGCGGGAACTTCC
GGTCTGCCTTGCCGCTGGTTGACTGAGGAAGTCTCTCCTCGGTCCGTGCTCTGGGCTGGGACCC
TGCTTCCCACAGCTGTGAGAAGAGCGGGGTGAGGTCAGAATCCGCGCTATGGCTGCAGTGACCT
ATGAGGATGTGCACGTGAACTTCACCCATGAAGAGTGGGCTTTGCTGGATCCTTTCCAAAAGAG
TCTCTACAAAGATGTGATGCTGGAGACCTACTGGAACCTCACTGCTATAGGATACAAATTGGAA
GACCTGAATAGTGAGGAACACTCTCCACGCTCTAGAAGATATGAAAGACATAATATCTGTCACT
CTGGGTATAAACCTTGTGAACGTAAAGGATATGGAAAGAAGCAATGTACCTTTGCAAGTAAAAG
ATTTCTTCAAATATATGAAAGCATCCATACTGAAGGGAATCCGTATGAATGTAAACAATGCAGT
CAAATCTTTGCAAATTTATATCATCTTCAAAAACATGAAAAAAAACATACCAGAGAAAAACTAT
ATGAATGTAATCACTGTGGTAAAGCCTTTCCAAGTCGCAATTCTCTTCAAATACACAACAGAAC
TCATACAGGAGAGAAACCCTATGATTGCAACCAATGTGGTAAAGCATTTACATGTAGCAGTAAT
CTTTTACTACACAAAAGAACTCATACAGGAGAGAAACCCTATGATTGTAATGACTGTGGTAAAG
CATTTGCAAGTAGCAGTAATCTTCAAATTCATAAAAGAAAGCACACTGGAGAGAAACCCTATGG
ATGTAATCAGTGTGGTAAAGCCTTTGCATATAGCAATGCTCTTCAAAAACATGAAAGAAGTCAT
ACTAGAGAGAAAATCTATGAGTGTAATCATTGTGGTAAAGCTTTTGCACGTCGTAGAAGTCTTC
AAAATCATGAAGAACATCATACTCTTGAAAAACCATATGAATGTAGTCAATGTGGTAAAGCCTT
TGCATATAGCAGTAATCTTTATATACATGAAAGAAGTCATACTGGAGAAAAGCCATTCAAATGT
CCTCAATGTGGTAAAGCCTTTCCAAGTCACAGTTCTCTTCAAATACATGAAAGAACTCATACAG
GAGAAAAACCCTATGACTGTAATGAATGTGGTAAAGCATTCGCATGTCGCAGTAATCTTCTACT
ACACAAAAGAACTCATACAGGAGAAAAACCCTATCATTGCATTAAATGTGATAAAGCATTTGCA
TGTAGCAGTAGTCTTCAAAAACATGAAAAAACTCACACTGGAGAGAAACCTTATAAATGTAATC
AGTGTGGTAAAGCCTTTGCACGTCGAAGCGATCTGTATATACATGTAAGAATCCATACTGGAGA
GAAACCATATAAGTGTAGTCAATGTGGAAAAGCATTTGTACATTGCATTAGTCTTCAGAGGCAT
GAACGAACTCACACTGGAGAGAAACCTTATGAGTGTAATCAATGTGGTAAAGCCTTTACACGTC
GCTTTAGTCTTCAAGTACATGAAAGAAGTCATAGTGGAGAGAAACCTTATGAGTGTAATCAGTG
TGGTAAAGCCTTTGCAAGTCGTAGTAGTCTTCGATATCATAGAAAACACCATACTGTTAAGAAA
CCAAATTAACCAGTGTGGTAAAGCCTGTTGGAATCACCTTCAAACACATGAAAGAAATCATACT
GGATAGAAACTATGCGTATAGTCAATGTGGACAAGCCTTTATATATCACAGTAGTCTTCTAAAT
CACAAAACCAATGTCATATGGAGAGAAACCCTACAAATGTAATTGATGCAGTAAGCTTTGGCAT
GTTTACAGAATTGTCAGGGCTACTGGAAAAATTGCGGATGGAGGTTGCAGAACTTGGGAAACTA
CACGCATTGGAAAAGGGAGAATCAAAAGCCTCAGTACAGCACAGGAGGAGCTTGCCTGGAGCCT
TCTGGACCCAGGAACCTAGTAGCCATGAGGGATCCATCTGGTTTCTGCCTGCACCCAAAGCTGA
AAGCCAGTCTCCAGCAGTGCTGACACATCAGAGAACAGAGGTAAGGCCACTACTTCCGACCCGC
CTGGAGCCCTCAGAACACAGAACCCAGGAGCAGTCTGGGACAGGATCCTTCCAGGTTTTGCCTG
CACCCAGAGGTAACCTGGTCCCACAGCTTCCCCTGGGGGGAAGAGTGGGAATCTCAGAGGTATA
GGCCATCCTGGGAGCGCAGGGAAGATCACAACTTCTGCTGGCATTCCTGGTCCATGAAGAACCT
GTCTGGAAACCTCAGGAAACAGGAACCTAGGAGCAATCTGGGGTAGGATCCTTACGGTTACTGC
CTGCGCCCGGCCCTGTGACACAGTTCTCTGGACTCAGGCCCTGCTGGCAGAAACCTGGTTTCCA
GAAGTGTTGACACACAGGCTTACAGGAGGGTCAAGCCACTGTCAGAGACAGCAA

hide sequence

RefSeq Acc Id:

XR_001838721

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,328,854 - 8,358,853 (-)	NCBI
mRatBN7.2	7	7,683,807 - 7,708,070 (-)	NCBI
Rnor_6.0	7	10,412,577 - 10,436,936 (-)	NCBI

Sequence:

show sequence

GGGTTGACTTTGCAGTCCAGGTGAAAGTTATGCAATGCCAGTCTCCACTCTGTGCCTGGGGTGG
AATGTAGGGCTGTGCTGTGTTCCTTCACAGCACTCTGTCTCTAAGGGAGCTGCTCCTGTCACTC
AAGCGTCACTCGCTAATCAGGGCCTCGAGGCGGAACATCAGTCGGAATAGAGGCGGGAACTTCC
GGTCTGCCTTGCCGCTGGTTGACTGAGGAAGTCTCTCCTCGGTCCGTGCTCTGGGCTGGGACCC
TGCTTCCCACAGCTGTGAGAAGAGCGGGGTGAGGTCAGAATCCGCGCTATGGCTGCAGTGACCT
ATGAGGATGTGCACGTGAACTTCACCCATGAAGAGTGGGCTTTGCTGGATCCTTTCCAAAAGAG
TCTCTACAAAGATGTGATGCTGGAGACCTACTGGAACCTCACTGCTATAGGATACAAATTGGAA
GACCTGAATAGTGAGGAACACTCTCCACGCTCTAGAAGATATGAAAGACATAATATCTGTCACT
CTGGGTATAAACCTTGTGAACGTAAAGGATATGGAAAGAAGCAATGTACCTTTGCAAGTAAAAG
ATTTCTTCAAATATATGAAAGCATCCATACTGAAGGGAATCCGTATGAATGTAAACAATGCAGT
CAAATCTTTGCAAATTTATATCATCTTCAAAAACATGAAAAAAAACATACCAGAGAAAAACTAT
ATGAATGTAATCACTGTGGTAAAGCCTTTCCAAGTCGCAATTCTCTTCAAATACACAACAGAAC
TCATACAGGAGAGAAACCCTATGATTGCAACCAATGTGGTAAAGCATTTACATGTAGCAGTAAT
CTTTTACTACACAAAAGAACTCATACAGGAGAGAAACCCTATGATTGTAATGACTGTGGTAAAG
CATTTGCAAGTAGCAGTAATCTTCAAATTCATAAAAGAAAGCACACTGGAGAGAAACCCTATGG
ATGTAATCAGTGTGGTAAAGCCTTTGCATATAGCAATGCTCTTCAAAAACATGAAAGAAGTCAT
ACTAGAGAGAAAATCTATGAGTGTAATCATTGTGGTAAAGCTTTTGCACGTCGTAGAAGTCTTC
AAAATCATGAAGAACATCATACTCTTGAAAAACCATATGAATGTAGTCAATGTGGTAAAGCCTT
TGCATATAGCAGTAATCTTTATATACATGAAAGAAGTCATACTGGAGAAAAGCCATTCAAATGT
CCTCAATGTGGTAAAGCCTTTCCAAGTCACAGTTCTCTTCAAATACATGAAAGAACTCATACAG
GAGAAAAACCCTATGACTGTAATGAATGTGGTAAAGCATTCGCATGTCGCAGTAATCTTCTACT
ACACAAAAGAACTCATACAGGAGAAAAACCCTATCATTGCATTAAATGTGATAAAGCATTTGCA
TGTAGCAGTAGTCTTCAAAAACATGAAAAAACTCACACTGGAGAGAAACCTTATAAATGTAATC
AGTGTGGTAAAGCCTTTGCACGTCGAAGCGATCTGTATATACATGTAAGAATCCATACTGGAGA
GAAACCATATAAGTGTAGTCAATGTGGAAAAGCATTTGTACATTGCATTAGTCTTCAGAGGCAT
GAACGAACTCACACTGGAGAGAAACCTTATGAGTGTAATCAATGTGGTAAAGCCTTTACACGTC
GCTTTAGTCTTCAAGTACATGAAAGAAGTCATAGTGGAGAGAAACCTTATGAGTGTAATCAGTG
TGGTAAAGCCTTTGCAAGTCGTAGTAGTCTTCGATATCATAGAAAACACCATACTGTTAAGAAA
CCAAATTAACCAGTGTGGTAAAGCCTGTTGGAATCACCTTCAAACACATGAAAGAAATCATACT
GGATAGAAACTATGCGTATAGTCAATGTGGACAAGCCTTTATATATCACAGTAGTCTTCTAAAT
CACAAAACCAATGTCATATGGAGAGAAACCCTACAAATGTAATTGATGCAGTAAGCTTTGGCAT
GTTTACAGAATTGTCAGGGCTACTGGAAAAATTGCGGATGGAGGTTGCAGAACTTGGGAAACTA
CACGCATTGGAAAAGGGAGAATCAAAAGCCTCAGTACAGGAGGAGCTTGCCTGGAGCCTTCTGG
ACCCAGGAACCTAGTAGCCATGAGGGATCCATCTGGTTTCTGCCTGCACCCAAAGCTGAAAGCC
AGTCTCCAGCAGTGCTGACACATCAGAGAACAGAGGTAAGGCCACTACTTCCGACCCGCCTGGA
GCCCTCAGAACACAGAACCCAGGAGCAGTCTGGGACAGGATCCTTCCAGGTTTTGCCTGCACCC
AGAGGTAACCTGGTCCCACAGCTTCCCCTGGGGGGAAGAGTGGGAATCTCAGAGGTATAGGCCA
TCCTGGGAGCGCAGGGAAGATCACAACTTCTGCTGGCATTCCTGGTCCATGAAGAACCTGTCTG
GAAACCTCAGGAAACAGGAACCTAGGAGCAATCTGGGGTAGGATCCTTACGGTTACTGCCTGCG
CCCGGCCCTGTGACACAGTTCTCTGGACTCAGGCCCTGCTGGCAGAAACCTGGTTTCCAGAAGT
GTTGACACACAGGCTTACAGGAGGGTCAAGCCACTGTCAGAGACAGCAA

hide sequence

RefSeq Acc Id:

XR_010053045

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,328,854 - 8,358,813 (-)	NCBI

RefSeq Acc Id:

XR_010053046

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,328,854 - 8,358,810 (-)	NCBI

RefSeq Acc Id:

XR_355238

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,328,854 - 8,358,853 (-)	NCBI
mRatBN7.2	7	7,685,112 - 7,708,070 (-)	NCBI
Rnor_6.0	7	10,412,577 - 10,436,936 (-)	NCBI
Rnor_5.0	7	10,568,260 - 10,607,832 (-)	NCBI

Sequence:

show sequence

GGGTTGACTTTGCAGTCCAGGTGAAAGTTATGCAATGCCAGTCTCCACTCTGTGCCTGGGGTGG
AATGTAGGGCTGTGCTGTGTTCCTTCACAGCACTCTGTCTCTAAGGGAGCTGCTCCTGTCACTC
AAGCGTCACTCGCTAATCAGGGCCTCGAGGCGGAACATCAGTCGGAATAGAGGCGGGAACTTCC
GGTCTGCCTTGCCGCTGGTTGACTGAGGAAGTCTCTCCTCGGTCCGTGCTCTGGGCTGGGACCC
TGCTTCCCACAGCTGTGAGAAGAGCGGGGTGAGGTCAGAATCCGCGCTATGGCTGCAGTGACCT
ATGAGGATGTGCACGTGAACTTCACCCATGAAGAGTGGGCTTTGCTGGATCCTTTCCAAAAGAG
TCTCTACAAAGATGTGATGCTGGAGACCTACTGGAACCTCACTGCTATAGGATACAAATTGGAA
GACCTGAATAGTGAGGAACACTCTCCACGCTCTAGAAGATATGAAAGACATAATATCTGTCACT
CTGGGTATAAACCTTGTGAACGTAAAGGATATGGAAAGAAGCAATGTACCTTTGCAAGTAAAAG
ATTTCTTCAAATATATGAAAGCATCCATACTGAAGGGAATCCGTATGAATGTAAACAATGCAGT
CAAATCTTTGCAAATTTATATCATCTTCAAAAACATGAAAAAAAACATACCAGAGAAAAACTAT
ATGAATGTAATCACTGTGGTAAAGCCTTTCCAAGTCGCAATTCTCTTCAAATACACAACAGAAC
TCATACAGGAGAGAAACCCTATGATTGCAACCAATGTGGTAAAGCATTTACATGTAGCAGTAAT
CTTTTACTACACAAAAGAACTCATACAGGAGAGAAACCCTATGATTGTAATGACTGTGGTAAAG
CATTTGCAAGTAGCAGTAATCTTCAAATTCATAAAAGAAAGCACACTGGAGAGAAACCCTATGG
ATGTAATCAGTGTGGTAAAGCCTTTGCATATAGCAATGCTCTTCAAAAACATGAAAGAAGTCAT
ACTAGAGAGAAAATCTATGAGTGTAATCATTGTGGTAAAGCTTTTGCACGTCGTAGAAGTCTTC
AAAATCATGAAGAACATCATACTCTTGAAAAACCATATGAATGTAGTCAATGTGGTAAAGCCTT
TGCATATAGCAGTAATCTTTATATACATGAAAGAAGTCATACTGGAGAAAAGCCATTCAAATGT
CCTCAATGTGGTAAAGCCTTTCCAAGTCACAGTTCTCTTCAAATACATGAAAGAACTCATACAG
GAGAAAAACCCTATGACTGTAATGAATGTGGTAAAGCATTCGCATGTCGCAGTAATCTTCTACT
ACACAAAAGAACTCATACAGGAGAAAAACCCTATCATTGCATTAAATGTGATAAAGCATTTGCA
TGTAGCAGTAGTCTTCAAAAACATGAAAAAACTCACACTGGAGAGAAACCTTATAAATGTAATC
AGTGTGGTAAAGCCTTTGCACGTCGAAGCGATCTGTATATACATGTAAGAATCCATACTGGAGA
GAAACCATATAAGTGTAGTCAATGTGGAAAAGCATTTGTACATTGCATTAGTCTTCAGAGGCAT
GAACGAACTCACACTGGAGAGAAACCTTATGAGTGTAATCAATGTGGTAAAGCCTTTACACGTC
GCTTTAGTCTTCAAGTACATGAAAGAAGTCATAGTGGAGAGAAACCTTATGAGTGTAATCAGTG
TGGTAAAGCCTTTGCAAGTCGTAGTAGTCTTCGATATCATAGAAAACACCATACTGTTAAGAAA
CCAAATTAACCAGTGTGGTAAAGCCTGTTGGAATCACCTTCAAACACATGAAAGAAATCATACT
GGATAGAAACTATGCGTATAGTCAATGTGGACAAGCCTTTATATATCACAGTAGTCTTCTAAAT
CACAAAACCAATGTCATATGGAGAGAAACCCTACAAATGTAATTGATGCAGTAAGCTTTGGCAT
GTTTACAGAATTGTCAGGGCTACTGGAAAAATTGCGGATGGAGGTTGCAGAACTTGGGAAACTA
CACGCATTGGAAAAGGGAGAATCAAAAGCCTCAGTACAGGTGACTACACAAGACAGCAGGAGTT
TCTTACAAGAATAAAGTGGGAAAGAAACTGCTCTGGAGGGTCCTCAGGTCAGAGAAAAGCTGAA
AAGAAAGGATGGCAGTCTGATGAAACAGCTGATTTGAGGAGAAAGTATTAATCTCAAAACAGTT
GTGCCACCAGAGTGGGAGGCAGGGCATCCTGGAGTTACAAAATCACCATCATCTTTCCCAGTAG
TCATACAGCATATGCCTTCTAATAGGATGATAAAAAGTTATGACAAGGTAGGATAGAGTCCTGT
TGATGTCCTCATCTTATGTCAAACAAATTCTAAATGACTAGTCTACTAAAAATAGAAATATACC
TTTGCACATGCTGAAAGGAAGGACCTATGAATATCAAGAAATGAAATAGTGTAAGCGAAATGAA
TATAGTAAAAGACCAATTGCTAGGCAAAGGGCAGTACTCTGATATATAAGAACAAAAGCAATTC
AATTCTGTTACTATAGAACAATGTTGCTTAGTGGCTTTAAGTCCTTTGGACAAATGGTATAAGA
TAATGATTTAAGAATGATATAAGACCCACCTCATTCACTGAATTTTGTTTTCAAAACAAATATT
AGTCTCAGCTGTAAAGAAGGCCCTATCAGATCCTGATGTAAGGCAGGTGTTGATAGAGACCTTG
GCAGAGGAAAATGCAAATACAGAATGTAAAGAAGGTATTACACCATCAAAGACTTGGAAAGCAC
ACATGGATGAGTGGATAAAGGATACAACCAATATTGGTTCTAACTTGTATCATGTTCATAGCAT
AGATAAAACTATAGCCAGAAGTCTCTAATATCAAAATGCATCAATTGCATGAAATAAACTCATT
TGAAGAGATGGGGACCAAGCCATTAAAGATCTCAGATTACAAAATGGCAGTGTGTTAAATGCAA
GAAATATAATACTTGGCACTGAAAGAGTAAACAAGGTATCTTTAAAGGTAATGGTTTTTCTAAA
TATACACTAGAAAAACAGCCTAGTCATTGAAGTATGTACAGGGAATGTGGCAGTTCTTTACATT
GGACCAGTGGAAGGTACTGCAGGCTGTGCTGCTCTAAACCTGGCCATAGATAAACATCTTACTG
TACCCACCAAAACTCAATGTTATAAAATATATACTGGACTTCATGGTCCTTTGCCTGCCAGGAC
AGTAGGAATGATCTTGGAAATGTGCAGATTGACTTCTCAAGGATTCATTGTTCTTCCAGAAATT
AAAGATGAACCTTTCAAAAGAGAAATTAAAATTATAGCCTATGTGAAAACAGATGGCATTTAAT
GCAGGTGGTAGGAATTGCTGAGCTTCTACTGTTTCCCTACATCAAAGCCAAAATGGGCCAAGTA
CAAAAACAAAACAAAAAACAGAAGGGTTGAAGTACTAGAAAACATGTTCTGGGAAAGTGTTATT
AATGCCCAGAGGCCAAAATTAAAATTGCAAGTAAATGGTATTGAAATAGTAAGATTGGTGGATA
CAGGAACTGATATAACTATTATTTATGAAAGATCCTGAAATTCAGAATGGCCACTTCCAAAGGT
TTGTTCACAGTTTCTTGGAACTGGAAAGTTATATGAGACAAAGTGTACTATGGGTCAAATGTGT
GAGACTGGAATGTCAACACGGAAAGTTAAAGTCTTATGTGGCTGATATACCCATATGTTTATTG
GAAAGGGAATTCTTTTTACAACAGTGGCTCCGATTAATATTCCCAAAATCCCATAATGAAATTA
AGGCTGAACTGGTACATGCTCCTGGGAAAGGTATTGCTATGCATCATCATAAATAATTCAAGGC
TGTGCCAATTGTCCAAACATAAGACATCCCAGGGATTCAGTTTCCAAATTTACAATGGAGGCCA
CCAATGAGTTACCATTGGACCTACCCTTAAAATGGTTGATTAATATGCCTGTATGGATAGATTA
GTGGCCCATAACAAAGGAAAAATTATTGGCACTTGAGTAGCTGGTACATGAGCAGCTCTATGGG
CAACATACAGAAGTGTCTACTAGCCCATTTAATTTTTCTGTGGTTTTTATAAAAAAGAAATAAG
GAAAAAGGAGAATGTTAATACATTTAAGATTGGTGGATAGAATAATTCAACTAATCTGCCCCTT
AAAGCCTGGAATTTCTTTACTTTTTTATTCCCTAAGCCGAGGCTGAAGATAGTACTTTATTTAA
AAGTTTGTTTTTTAAAAATCCCCTTGCATGAGCAGAATAGGAAAAGGTTTACCTTCACAATACC
TACTTATGATAATGATCACTCAGTAAAAGGTGATCATTATGGAAAGTTCCATAAGAGATATTAA
ATTGTCTAACTTTATGTCAATATTTTGTCAAACAGCCGCAAGAAATAATTTGTAGGCAATTTCC
TCAAACCATTGTTTATCATTACATGGTTATTTTGTTGTCAGATTCTGAAGAAATATTTTAGAGA
AAAAGTTAAAGGAAACAAACAATTCTGCCATGCTGGGAATTAGAGATTGCTCTTAAAGAAAAAA
AAACAAAACAAACAAAACAACAACAACAACAAAAAAACTGCAGTGAGGAGATTCTATTAACTAT
GTGGGTATAAAATAAGTCAACAGAAAATTCAACCACAAAAGATACAGATTAGAAGAGATCAACT
GCAAACTCTTTGGTTTTCAAATTCTAATGATAGATAATAATTTGCTACCACCTAACATTGAATT
AACTGCTCAGGAGTTGAGTAATTTGTTTGTAACATTACAAGGAGATTTAGACTTAAACAGTCCA
GGATGGTTAACAGGTGAAGCAAAGTAAGAGTTAACTCTGGTAGAACAGAGAACTAAAAAATGTG
TATGTGGCTCGCATAGTTCCTAAAGTTGATTGTATTTTGGTTACTTTGCCTTCAACTCATTTTC
ATACTGGTCATCATGCAAAGGGAAGATACGATTATTGAGTAGACTTTCTTACCACACAAAGTAA
AAAGTTAAAGACTTAAATAGAAAAAGTTTCTGATAGAAGGTAAGCAAGACTATACCAATTGTCA
GGGATACACCCAGCAGAAATTGTAGTACTTTATACTAATATTAAGATTATGACTGTGACCAGAA
CTGACTGGGCCCCACAGCTCTCTGTACCCAGATCCTGTGGGAGAGAAAGCTGGTCTCTTGGGGG
CTGGGAGGAGGGTACAGACAATCCTGAGAGTGCACAGGAGACCACCACTTCTGCTCAAATTCCT
AGCACAGGAGGAGCTTGCCTGGAGCCTTCTGGACCCAGGAACCTAGTAGCCATGAGGGATCCAT
CTGGTTTCTGCCTGCACCCAAAGCTGAAAGCCAGTCTCCAGCAGTGCTGACACATCAGAGAACA
GAGGTAAGGCCACTACTTCCGACCCGCCTGGAGCCCTCAGAACACAGAACCCAGGAGCAGTCTG
GGACAGGATCCTTCCAGGTTTTGCCTGCACCCAGAGGTAACCTGGTCCCACAGCTTCCCCTGGG
GGGAAGAGTGGGAATCTCAGAGGTATAGGCCATCCTGGGAGCGCAGGGAAGATCACAACTTCTG
CTGGCATTCCTGGTCCATGAAGAACCTGTCTGGAAACCTCAGGAAACAGGAACCTAGGAGCAAT
CTGGGGTAGGATCCTTACGGTTACTGCCTGCGCCCGGCCCTGTGACACAGTTCTCTGGACTCAG
GCCCTGCTGGCAGAAACCTGGTTTCCAGAAGTGTTGACACACAGGCTTACAGGAGGGTCAAGCC
ACTGTCAGAGACAGCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001156535	(Get FASTA)	NCBI Sequence Viewer
	XP_006240892	(Get FASTA)	NCBI Sequence Viewer
	XP_008763353	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051405
	ENSRNOP00000051405.5

RefSeq Acc Id:

NP_001156535 ⟸ NM_001163063

- UniProtKB:

A0A0G2K9M2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAVTYEDVHVNFTHEEWALLDPFQKSLYKDVMLETYWNLTAIGYKLEDLNSEEHSPRSRRYER
HNICHSGYKPCERKGYGKKQCTFASKRFLQIYESIHTEGNPYECKQCSQIFANLYHLQKHEKKH
TREKLYECNHCGKAFPSRNSLQIHNRTHTGEKPYDCNQCGKAFTCSSNLLLHKRTHTGEKPYDC
NDCGKAFASSSNLQIHKRKHTGEKPYGCNQCGKAFAYSNALQKHERSHTREKIYECNHCGKAFA
RRRSLQNHEEHHTLEKPYECSQCGKAFAYSSNLYIHERSHTGEKPFKCPQCGKAFPSHSSLQIH
ERTHTGEKPYDCNECGKAFACRSNLLLHKRTHTGEKPYHCIKCDKAFACSSSLQKHEKTHTGEK
PYKCNQCGKAFARRSDLYIHVRIHTGEKPYKCSQCGKAFVHCISLQRHERTHTGEKPYECNQCG
KAFTRRFSLQVHERSHSGEKPYECNQCGKAFASRSSLRYHRKHHTVKKPN

hide sequence

RefSeq Acc Id:	XP_006240892 ⟸ XM_006240830
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZT66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAVTYEDVHVNFTHEEWALLDPFQKSLYKDVMLETYWNLTAIGYKLEDLNSEEHSPRSRRYER FTELSGLLEKLRMEVAELGKLHALEKGESKASVQHRRSLPGAFWTQEPSSHEGSIWFLPAPKAE SQSPAVLTHQRTEVRPLLPTRLEPSEHRTQEQSGTGSFQVLPAPRGNLVPQLPLGGRVGISEV hide sequence

RefSeq Acc Id:	XP_008763353 ⟸ XM_008765131
- Peptide Label:	isoform X2
- Sequence:	show sequence MAAVTYEDVHVNFTHEEWALLDPFQKSLYKDVMLETYWNLTAIGYKLEDLNSEEHSPRSRRYER FTELSGLLEKLRMEVAELGKLHALEKGESKASVQEELAWSLLDPGT hide sequence

Ensembl Acc Id:

ENSRNOP00000051405 ⟸ ENSRNOT00000047433

Ensembl Acc Id:

ENSRNOP00000081680 ⟸ ENSRNOT00000094718

Ensembl Acc Id:

ENSRNOP00000089425 ⟸ ENSRNOT00000104041

Ensembl Acc Id:

ENSRNOP00000097778 ⟸ ENSRNOT00000101824

Ensembl Acc Id:

ENSRNOP00000063560 ⟸ ENSRNOT00000063989

Ensembl Acc Id:

ENSRNOP00000075050 ⟸ ENSRNOT00000086920

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K9M2-F1-model_v2	AlphaFold	A0A0G2K9M2	1-437	view protein structure
AF-A0A0G2QC13-F1-model_v2	AlphaFold	A0A0G2QC13	1-497	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1596088	AgrOrtholog
BioCyc Gene	G2FUF-35061	BioCyc
Ensembl Genes	ENSRNOG00000048910	Ensembl
	ENSRNOG00000066372	Ensembl
	ENSRNOG00000067221	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000047433	ENTREZGENE
	ENSRNOT00000047433.5	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
NCBI Gene	690419	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 544-RELATED	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-H2C2_2	UniProtKB/TrEMBL
PhenoGen	Zfp709l1	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000048910	RatGTEx
	ENSRNOG00000066372	RatGTEx
	ENSRNOG00000067221	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2K9M2	ENTREZGENE
	A0A0G2QC13_RAT	UniProtKB/TrEMBL
	A0A8I5ZT66	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Zfp709l1	zinc finger protein 709-like 1	LOC100909526	zinc finger protein 709-like	Data merged from RGD:6503429	737654	PROVISIONAL
2012-07-05	LOC100909526	zinc finger protein 709-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2009-01-21	Zfp709l1	zinc finger protein 709-like 1	LOC690419	similar to zinc finger protein 709	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC690419	similar to zinc finger protein 709			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message