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Gene: Vom2r34 (vomeronasal 2 receptor, 34) Rattus norvegicus

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Symbol:

Vom2r34

Name:

vomeronasal 2 receptor, 34

RGD ID:

1595956

Description:

INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; chlorohydrocarbon

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC108349536; LOC691767; similar to vomeronasal 2, receptor, 2; vomeronasal 2 receptor 34; vomeronasal type-2 receptor 26-like

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	82,239,224 - 82,260,623 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	82,239,224 - 82,260,623 (-)	Ensembl				GRCr8
mRatBN7.2	1	73,167,041 - 73,188,440 (-)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	1	78,563,862 - 78,594,269 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	87,128,215 - 87,158,621 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	80,318,930 - 80,349,337 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	65,863,047 - 65,922,964 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	66,851,404 - 66,861,815 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	1	66,717,414 - 66,730,537 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	73,070,166 - 73,091,565 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	60,608,200 - 60,627,729 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

6-propyl-2-thiouracil (EXP)

bisphenol A (EXP)

chlorohydrocarbon (EXP)

decabromodiphenyl ether (EXP)

furan (EXP)

methylmercury chloride (EXP)

vinclozolin (EXP)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15057822	PMID:17382427

Genomics

Variants

Variants in Vom2r34
111 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat

Markers in Region

D1Got402

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	73,187,110 - 73,187,236 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	66,044,963 - 66,045,088	NCBI	Rnor6.0
Rnor_5.0	1	66,852,608 - 66,852,733	UniSTS	Rnor5.0
RGSC_v3.4	1	73,090,236 - 73,090,361	UniSTS	RGSC3.4
Celera	1	60,609,404 - 60,609,529	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001099657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000068611 ⟹ ENSRNOP00000059911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	82,239,224 - 82,260,623 (-)	Ensembl

RefSeq Acc Id:

NM_001099657 ⟹ NP_001093127

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,239,224 - 82,260,623 (-)	NCBI
mRatBN7.2	1	73,167,041 - 73,188,440 (-)	NCBI
Rnor_5.0	1	66,717,414 - 66,730,537 (+)	NCBI
Rnor_5.0	1	66,851,404 - 66,861,815 (+)	NCBI
RGSC_v3.4	1	73,070,166 - 73,091,565 (-)	RGD
Celera	1	60,608,200 - 60,627,729 (+)	RGD

Sequence:

show sequence

AGTTTTGTCTTTGCCATTGAGGAGATTAATAAGAGTGCTCGGTTGTTGCCCAATTTAACACTGG
GCTTCTCCATTCGAAACTCTGGTGACTCAGTTCATGGAGCCCTGTATGATTCGGTGGGATTTCT
CACAGGGCAGGAGGAGCCCATCCCCAACTACACATGCCAGCATGGCTCTCCACAGGCTGCCTTG
GTCGGGGACACACGGTCATCCCTGTCTGTATCCATGGCCAGACTTCTGGGGCTAAAAAATTATC
ATTCCCCTCCATTGAAAAGAATAATCAGCTATTCATCTTCCCTACCTAGCCTGAGTGACAAGAT
CCAGTTTCCATCCTTCCTTTGGACACTGCCTAGTGATCTCTCATCCTGTCATGCAGTTACTCAG
CTGATAATTCACTTTCAGTGGTCCTGGGTGATCATTCTGGCCCAAGATGATGACTTTGGAGAGC
AGGCCAGTTCTCTGGCCACTCAGCAGCTGAGTGCAGCTGGTGTGTGCATTGAGTTTCACCTTCA
TGTCCCTTCCCAACAGACCTTGGGGAAGATTGGAGAGACTGTCCAGAAGATGCAGAAATGTACA
GCCAGAGTTGTCCTGGTTTTCTTAAGCAATTCAAATTTCCGGCTCATCTTGTATGGTTTACTTG
CTGTCTCTGTCTCAGGACAAGTCTGGGTTAGCAATGACACTCTGCACATGGCACTTGCTCTGAC
CATTCCAGGCACTTCCCAGGTCTTGCAAGGCACATTTGGCCTTCTGTATCACAGCAGCAGGGCA
ATTGGCTTCCCTGAGTTCTTTGCTCACTTGCGCCCCAACCAGACCCCAGAAGACATGTTTATAA
AGACGTTCTGGGAGTTTACATTTGATTGTACATGGCCCTACCAGAACAGCACAGTGACAGAGGG
TGTCCAGGTCTGCTCAGGGAATGAGAGTCTGAAGAACAAGCCATATCCTTTCCTAGAAGTGAGT
AAAATTGATGCTGCTTACAGAGCTGTCTACAGCATTGCCCATGCCCTGCATGATATGATATACA
GGCATGTTGAAAGTCAGAATCTCAATGATACATCAAATGTAATTATATATATATATACACACAT
ATATATATACGTATATGTGTATATGTATATATATGTATATGAGTGCATGTGCATGTGTGGCAGG
CTTATGTATCTCAGCATGCAGGCATATGATGTAGCTATGAGTTTTCCTCTTAGCACAGCTTTCG
TTGTGTCCCATAAGTTTGGGTATGTTGTACCTTCATTTTCATTAAATTCTAAAATGTCTTTAAT
TTCTTTCTTTATTTCTTCCTTGACCAGGTTATCCTTGCTTCTTCTGACCATTTGCTTGGAAAGT
TGTTTTCCAGACTTTCAGTCTGAGGTAGTGTCTGTCTTTGCCTCTGAGGTGTGTTTCCTACATA
GTGTTTTTGTGTCTCTCATAGACATGAAGAGATGTCTTCTGTGTCCCAAGGAGCAGTACCTGAG
ACATACCAGAGACCATTGCCTCCCCAGGACAGAGATCTTCCTGGCCTTTGAGGAACCATTGGGA
TTCATATTGGCTTTGATGGCAATCTTGCTGGCTGGTCTGGCTCTCCTGGTACTTGGAGTTTTCC
TGAAGCATCGAGACACACCTGTGGTCAGGGCCAACAACAGAACTCTCAGCTGCTTCCTCCTGAT
CTCTCTTTCCCTCTGTTCCCTCTGTTCTTTGCTTTTCCTTGGGAGACCCACTGTCACCACCTGT
CTCCTCCGTCAGACCACCTTTGCTGTGGTGTTCACAGTGGCTGTCTCCTCTGTTCTGGCCAAGA
CTGTCACAGTAGTCCTGGCCTTCAGAGTCACCAAGCCAGGAAGCAGGATCCAGGTATGCCTGAG
CCCTGGTGCTTCAACCTCAGTGGTCCTCATTGCTTCCTTAATACAGGCTGTTCTTTGTGGAGTG
TGGTTGGCTACCTCCCCACCATTCCCAGAGAGGGATATGATCTCAGAGCCCCAGCACATTGTGA
TCCAGTGCCAGGAGGGTTCTGGTGCCACCTTCTTCTGTGTGCTGGGCTTCTTAGGTTTCCTGGC
AGGGGGTACCTTCTCTGTGGCTTTCCTGGCCAGGGACCTACCAGATGTCTTCAATGAGACCAAG
TTCCTCACCTTCAGCATGCTGCTCTTCTGCAGTGTCTGGACAGCTTTCCTGCCCCTGTACCACA
GTGCTCGGGGAAAGTCCACTGTGGCGGTAGAGATCTTCTCCATCCTGGCCTCCACTGCTGGCCT
TTTGGGTGGCATCTTCATCCCCAAATGCTACATCATCTTGTTGAAACCAGAAAAGAATACCCCT
GCCTGGCTAAGGCAAGGCCACTGTGCACATCAAGACAGGCAGTTTTCGATGCTCCATAGAAGGT
GA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001093127	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059911

RefSeq Acc Id:

NP_001093127 ⟸ NM_001099657

- Sequence:

show sequence

MARLLGLKNYHSPPLKRIISYSSSLPSLSDKIQFPSFLWTLPSDLSSCHAVTQLIIHFQWSWVI
ILAQDDDFGEQASSLATQQLSAAGVCIEFHLHVPSQQTLGKIGETVQKMQKCTARVVLVFLSNS
NFRLILYGLLAVSVSGQVWVSNDTLHMALALTIPGTSQVLQGTFGLLYHSSRAIGFPEFFAHLR
PNQTPEDMFIKTFWEFTFDCTWPYQNSTVTEGVQVCSGNESLKNKPYPFLEVSKIDAAYRAVYS
IAHALHDMIYRHVESQNLNDTSNVIIYIYTHIYIYVYVYMYIYVYECMCMCGRLMYLSMQAYDV
AMSFPLSTAFVVSHKFGYVVPSFSLNSKMSLISFFISSLTRLSLLLLTICLESCFPDFQSEVVS
VFASEVCFLHSVFVSLIDMKRCLLCPKEQYLRHTRDHCLPRTEIFLAFEEPLGFILALMAILLA
GLALLVLGVFLKHRDTPVVRANNRTLSCFLLISLSLCSLCSLLFLGRPTVTTCLLRQTTFAVVF
TVAVSSVLAKTVTVVLAFRVTKPGSRIQVCLSPGASTSVVLIASLIQAVLCGVWLATSPPFPER
DMISEPQHIVIQCQEGSGATFFCVLGFLGFLAGGTFSVAFLARDLPDVFNETKFLTFSMLLFCS
VWTAFLPLYHSARGKSTVAVEIFSILASTAGLLGGIFIPKCYIILLKPEKNTPAWLRQGHCAHQ
DRQFSMLHRR

hide sequence

Ensembl Acc Id:

ENSRNOP00000059911 ⟸ ENSRNOT00000068611

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-60727	BioCyc
Ensembl Genes	ENSRNOG00000071315	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000068611	ENTREZGENE
NCBI Gene	691767	ENTREZGENE
PhenoGen	Vom2r34	PhenoGen
RatGTEx	ENSRNOG00000071315	RatGTEx

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Vom2r34	vomeronasal 2 receptor, 34	LOC108349536	vomeronasal type-2 receptor 26-like	Data merged from RGD:11476893	737654	PROVISIONAL
2016-08-02	LOC108349536	vomeronasal type-2 receptor 26-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2013-05-24	Vom2r34	vomeronasal 2 receptor, 34	LOC682814	similar to vomeronasal 2, receptor, 2	Data merged from RGD:1594032	1643240	APPROVED
2008-07-23	Vom2r34	vomeronasal 2 receptor, 34	LOC691767	similar to vomeronasal 2, receptor, 2	Symbol and Name updated	1299863	APPROVED
2006-11-20	LOC691767	similar to vomeronasal 2, receptor, 2			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC682814	similar to vomeronasal 2, receptor, 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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