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Gene: Prrc2b (proline-rich coiled-coil 2B) Rattus norvegicus

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Symbol:

Prrc2b

Name:

proline-rich coiled-coil 2B

RGD ID:

1595906

Description:

Predicted to be involved in cell differentiation. Predicted to act upstream of or within in utero embryonic development. Orthologous to human PRRC2B (proline rich coiled-coil 2B); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Bat2l; HLA-B associated transcript 2-like; LOC296637; protein BAT2-like 1; similar to HLA-B associated transcript-2 isoform a

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRRC2B (proline rich coiled-coil 2B)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Prrc2b (proline-rich coiled-coil 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prrc2b (proline rich coiled-coil 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRRC2B (proline rich coiled-coil 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRRC2B (proline rich coiled-coil 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prrc2b (proline rich coiled-coil 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRRC2B (proline rich coiled-coil 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRRC2B (proline rich coiled-coil 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prrc2b (proline rich coiled-coil 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Prrc2b (proline rich coiled-coil 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Prrc2b (proline-rich coiled-coil 2B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PRRC2B (proline rich coiled-coil 2B)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prrc2b (proline-rich coiled-coil 2B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F52G3.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	nocte	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	prrc2b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	prrc2b	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	35,831,017 - 35,916,854 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	35,863,046 - 35,916,854 (+)	Ensembl				GRCr8
mRatBN7.2	3	15,433,357 - 15,519,105 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,465,294 - 15,519,104 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	18,534,559 - 18,588,474 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	27,119,554 - 27,173,467 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	25,370,110 - 25,423,957 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	11,165,687 - 11,252,401 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	11,198,401 - 11,248,558 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	16,516,495 - 16,601,271 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	11,291,980 - 11,347,131 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	10,209,828 - 10,263,975 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

clobetasol (ISO)

coumarin (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

fenvalerate (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

indometacin (ISO)

methidathion (ISO)

Mono-carboxy isooctyl phthalate (ISO)

N-nitrosodiethylamine (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

piperonyl butoxide (ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

testosterone (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

xylitol (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IBA)

in utero embryonic development (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:22658674	PMID:22681889	PMID:24466597	PMID:27996060

Genomics

Comparative Map Data

Prrc2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	35,831,017 - 35,916,854 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	35,863,046 - 35,916,854 (+)	Ensembl				GRCr8
mRatBN7.2	3	15,433,357 - 15,519,105 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,465,294 - 15,519,104 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	18,534,559 - 18,588,474 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	27,119,554 - 27,173,467 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	25,370,110 - 25,423,957 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	11,165,687 - 11,252,401 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	11,198,401 - 11,248,558 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	16,516,495 - 16,601,271 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	11,291,980 - 11,347,131 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	10,209,828 - 10,263,975 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

PRRC2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	131,373,651 - 131,500,193 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	131,373,636 - 131,500,197 (+)	Ensembl			hg38	GRCh38
GRCh37	9	134,249,038 - 134,375,580 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	133,295,298 - 133,365,399 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	131,383,478 - 131,405,135	NCBI
Celera	9	104,845,673 - 104,915,750 (+)	NCBI		Celera
Cytogenetic Map	9	q34.13	NCBI
HuRef	9	103,799,970 - 103,870,018 (+)	NCBI		HuRef
CHM1_1	9	134,454,987 - 134,525,048 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	143,583,138 - 143,713,087 (+)	NCBI		T2T-CHM13v2.0

Prrc2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	32,041,002 - 32,124,549 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	32,041,094 - 32,124,549 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	32,151,031 - 32,234,537 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	32,151,082 - 32,234,537 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	32,006,668 - 32,090,057 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	31,973,166 - 32,056,534 (+)	NCBI		MGSCv36	mm8
Celera	2	31,855,341 - 31,938,874 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	22.05	NCBI

Prrc2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	1,138,292 - 1,183,665 (+)	Ensembl
ChiLan1.0	NW_004955513	1,137,099 - 1,187,724 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRRC2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	7,855,444 - 7,983,901 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	7,857,780 - 7,986,243 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	102,516,585 - 102,622,588 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	131,138,102 - 131,262,898 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	131,193,641 - 131,262,894 (+)	Ensembl			panPan2	panpan1.1

PRRC2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	52,642,916 - 52,702,203 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	52,528,970 - 52,702,203 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	51,905,994 - 51,993,363 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	53,541,288 - 53,629,078 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	53,536,931 - 53,629,425 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	52,319,084 - 52,406,351 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	52,638,033 - 52,725,825 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	52,732,544 - 52,820,102 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Prrc2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	198,402,512 - 198,480,665 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	18,196,751 - 18,245,266 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	18,196,673 - 18,247,725 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRRC2B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	271,336,818 - 271,430,916 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	271,336,780 - 271,430,936 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	305,377,250 - 305,439,305 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRRC2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	6,643,975 - 6,767,834 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	6,646,394 - 6,713,044 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666079	8,786,670 - 8,915,385 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prrc2b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	4,514,584 - 4,579,768 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	4,512,387 - 4,579,759 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Prrc2b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	3,403,682 - 3,487,246 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Prrc2b
514 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	154
Count of miRNA genes:	116
Interacting mature miRNAs:	126
Transcripts:	ENSRNOT00000013546, ENSRNOT00000066368
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH128685

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,517,946 - 15,518,971 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,251,244 - 11,252,267	NCBI	Rnor6.0
Rnor_5.0	3	16,600,114 - 16,601,137	UniSTS	Rnor5.0
RGSC_v3.4	3	11,346,004 - 11,347,027	UniSTS	RGSC3.4
Celera	3	10,262,818 - 10,263,841	UniSTS
RH 3.4 Map	3	62.4	UniSTS
Cytogenetic Map	3	p11	UniSTS

RH128944

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,517,135 - 15,517,315 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,250,433 - 11,250,612	NCBI	Rnor6.0
Rnor_5.0	3	16,599,303 - 16,599,482	UniSTS	Rnor5.0
RGSC_v3.4	3	11,345,193 - 11,345,372	UniSTS	RGSC3.4
Celera	3	10,262,007 - 10,262,186	UniSTS
RH 3.4 Map	3	65.7	UniSTS
Cytogenetic Map	3	p11	UniSTS

BE120723

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,476,434 - 15,476,584 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,209,730 - 11,209,879	NCBI	Rnor6.0
Rnor_5.0	3	16,558,577 - 16,558,726	UniSTS	Rnor5.0
Celera	3	10,221,288 - 10,221,437	UniSTS
RH 3.4 Map	3	61.4	UniSTS
Cytogenetic Map	3	p11	UniSTS

RH140765

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,512,808 - 15,512,986 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,246,108 - 11,246,285	NCBI	Rnor6.0
Rnor_5.0	3	16,594,978 - 16,595,155	UniSTS	Rnor5.0
RGSC_v3.4	3	11,340,867 - 11,341,044	UniSTS	RGSC3.4
Celera	3	10,257,682 - 10,257,859	UniSTS
RH 3.4 Map	3	65.2	UniSTS
Cytogenetic Map	3	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001371270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BQ196229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013546 ⟹ ENSRNOP00000013546

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	35,863,051 - 35,913,923 (+)	Ensembl
mRatBN7.2 Ensembl	3	15,465,299 - 15,519,104 (+)	Ensembl
Rnor_6.0 Ensembl	3	11,207,542 - 11,248,469 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000066368 ⟹ ENSRNOP00000063117

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	35,863,051 - 35,916,854 (+)	Ensembl
mRatBN7.2 Ensembl	3	15,465,299 - 15,519,104 (+)	Ensembl
Rnor_6.0 Ensembl	3	11,198,401 - 11,248,558 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088576 ⟹ ENSRNOP00000075535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	35,863,046 - 35,916,809 (+)	Ensembl
mRatBN7.2 Ensembl	3	15,465,294 - 15,519,060 (+)	Ensembl
Rnor_6.0 Ensembl	3	11,198,401 - 11,245,216 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115910 ⟹ ENSRNOP00000086230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	15,472,957 - 15,519,104 (+)	Ensembl

RefSeq Acc Id:

NM_001134518 ⟹ NP_001127990

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,863,046 - 35,916,824 (+)	NCBI
mRatBN7.2	3	15,465,294 - 15,519,075 (+)	NCBI

RefSeq Acc Id:

NM_001371270 ⟹ NP_001358199

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,863,051 - 35,916,854 (+)	NCBI
mRatBN7.2	3	15,465,299 - 15,519,105 (+)	NCBI

RefSeq Acc Id:

XM_006234005 ⟹ XP_006234067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,831,017 - 35,916,854 (+)	NCBI
mRatBN7.2	3	15,433,357 - 15,519,105 (+)	NCBI
Rnor_6.0	3	11,165,687 - 11,252,401 (+)	NCBI
Rnor_5.0	3	16,516,495 - 16,601,271 (+)	NCBI

Sequence:

show sequence

CCTCGTGTGCGTCGCGAGACAGCCTTCGCCCGGTCCCGTCTCGCGCGGACGCAGACCAGGCAAA
TCGGGAGCGGTGCCGAGAAAAATTTCCTTACTAGATGACATTTCATCGCAATGTCCGATCGTTT
GGGGCAAATAACCCAGGGCAAGGATGGGAAAAGCAAGTACTCGACTCTCAGCCTGTTTGACAAG
TATAAAGGGAGGTCAGTAGGCGCAGTCAGATCCTCAGTTATTCCTAGACATGGCTTACAGAGTC
TCGGGAAAGTTGCCACAGCCCGGCGTATGCCACCGCCTGCAAACCTGCCAAGCCTGAAGTCTGA
AAACAAAGGAAACGACCCCAACATCGTGATAGTTCCCAAGGACGGGACAGGATGGGCCAACAAG
CAGGACCAGCAAGACCCAAAGAGTTCCAGTGTGACAGCCTCTCAGCTGCCGGAGTCGCAGCCGC
AGCCGGGTTTGCAGAAATCTGTCTCCAACTTGCAGAAACCGACACAGTCTATCAGTCAGGAGAA
CACAAGTTCAGTGCCAGGTGGACCAAAGTCATGGGCACAGCTGAGTGGAAAGCCAGTCGGACAC
GAAGGTGGTTTAAGGGGCTCAAGCCGACTGTTATCCTTCTCTCCCGAGGAATTTCCGACGCTGA
AAGCAGCTGGCGGGCAGGACAAGGCTGGCAAAGAAAAGGGCGCCTTAGATCTGTCGTATGGGCC
AGGACCAAGCCTCCGCCCTCAGAATGTGTCAAGCTGGAGGGAGGGCGGTGGGCGAAACATCATC
TCTGCCGTGTCTCTGAGTGCCTCCCCAACAGAGCTGGGCAGCAGAAACTCCAGTGGGGGAGATG
GAGCCTCCTCCTCGGCATGCACCAGCGATTCTAAGGACCCCTCTCTCCGCCCGGCTCAGCCCAG
CCGCAAAGGGGCGTCACAGTTCATGGGACATGTTTACCAGCCGCCCACATACCATGACATGCTT
CCAGCTTTTATGTGTTCACCACAGTCATCCGAGAACCAGAATACGGTGGAACGAAGCTCATTCC
CCCTTCCTCAGCTCCGCCTGGAACCCCGTGTTCCTTTCAGACAGTTCCAGATGAATGACCAAGA
TGGGAAAGAAAGACCAGGCGTGGCAAGGCCTGTGCGCCCACTCAGGCAGCTGGTGGAGCGGGCA
CCACGGCCCACCATCATCAACGCAGAAAATCTGAAGGGCCTGGATGATCTGGACACCGACGCAG
ATGATGGCTGGGCAGGCCTCCACGAGGAAGTGGACTATTCTGAGAAACTCAAGTTCAGTGACGA
TGAGGATGAGGAGGACGTCGTGAAAGATGGCCGGTCAAAGTGGAACAATTGGGACCCCAGGCGT
CAGAGAGCATTGTCGCTGAGCTCTGCAGACAGCACCGATGCCAAGCGCACTCAGGAGGAAGGAA
AAGACTGGAGTGGAACAGCAGGTGTGTCCCGTGTCGTCCGAAAGGTGCCAGAGCCTCAGCCTCC
TTCCAGGAAGCTTCACAGCTGGGCCTCAGGCCCCGACTACCAGAAGCCCACAATGGGCAGCATG
TTCCGCCCACAGTCCATCGAGGACAAGGAGGACAAGCCACCCCCACGGCAGAAGTTCATCCAGT
CAGAGATGTCCGAGGCCGTGGAACGAGCCCGAAAGCGCAGGGAAGAAGAGGAGCGCCGGGCCCG
GGAGGAAAGGCTAGCTGCCTGTGCTGCCAAACTCAAGCAGCTAGACCAGAAGTGCAGGCAGGCT
CAGAAGGCCAGTGAGACACCGAAACCAGTGGAAAAGGAGGTCCCCCGATCCCCGGGCATTGAGA
AGCTCTCCCCACCAGAGAACGGCCCTGTTGTCCGTAAAGGCTCCCCAGAATTCCCTGTGCAAGA
AGCACCCACCATGTTCTTGGAAGAGACACCTGCAACGTCCCCAACAGTGGCTCAGAGCAACAAC
AGCAGCAGCAGCAGCAGTAGCAGCATCGAGGAGGAAGTCCGGGAGGCTGGGTCCCCTGCACAGG
AGTTCAGCAAGTACCAGAAGTCCCTTCCTCCCCGTTTCCAGCGCCAGCAACAGCAGCAGCAGCA
GCAGCAACAACAACAGCAGCAGCAGCAGCAACAGCAACAGCAGCAACAGCAGGAGCAGCTGTAC
AAGATGCAACACTGGCAGCCGGTGTACCCCCCACCTTCTCACCCCCAGCGTACCTTCTACCCAC
ACCACCCCCAGATGCTGGGCTTTGACCCACGGTGGATGATGATGCCCTCCTACATGGACCCGCG
CATCACCCCGACGCGCACACCCGTGGACTTCTACCCCTCAGCCCTGCATCCTTCAGGACTGATG
AAACCCATGATGCCCCAAGAGTCCCTCAGTGGGACTGGCTGTCGCTCTGAAGATCAAAACTGTG
TGCCCTCACTCCAAGAACGAAAAGTGACCGCCATCGACCCGGCTCCTGTGTGGAGCCCAGAGGG
CTACATGGCACTGCAGAACAAGGGCTACTCACTGTCCCACCCGAAGTCTGCCGACACTCTGGCC
ATGGGCATGCACGTCAGGAATGAAAGGTCTTACTGTGCCTCCCCCGGAAGGTCAGGGGGCATAA
GTGCCCAGCGCGATCTCTTTGAGGAGAGAGGGGAGGAGTTCTTGAGTGCTTTTGACAAGAAGGC
CCAAGCAGACTTTGACAGCTGTATCTCTTCTCAAAGAATAGGCCAGGAGCTTTTATTTCCACCC
CAGGAAAATGTTCAGGAGGTGGGTGCTCCTGGGGGTTGTACCCCAAACCTCAGGTGTTCCCCAT
TGGAGCCTGACTTTGTCCCGGCTGAGAAAAAGCCAGAGTGTGGCAGCTGGGATGTTGGCCACCA
GCCAAAGGCTGCCGACATGGCCAACAGTGTCGAGCTGGAGGCGCCCCGGCAGGAGCCTTCCTTT
CATGTTTCCTCTTGGGAGAAGGAAGGGAGCCCCAAGAAACAGCCAAACCCAGAGCCCGAGTGGA
CACCCGAGCCCCGGAGCTCCAGCGGCCAGCAGCAGGAGCAGCCCGGCAGGACCCGGAGGTCAGG
GCCCATCAAGAAACCTGTTCTCAAGGCCCTGAAGGTGGAAGAAAAGGAGAAAGCCCTGGAGAGA
GTCAGGCAGGGCCTTGGAGAGGAGAGCTCACAGAGGGCCACAGAGAAAGAACCCCCGTGCAGGG
CGGAAGAGGACGAGGATGAGGAGAACAACCCTGCCCTAGCCAACGCCTCCTCGGCCCTGGAGGA
TAAGGCTGCTGCCCGGGGTGGGTTTGGCCATGAGGCTAGCAAGCTGGATGAAGAAGCAAAGACT
GACAAGACCTGGGAGAGCAGGCCCTCAAGGGAGGCCAGTGAGATTCCGCCACCCAAGAGAAACA
ACTGGATCTTCATTGATGAGGAGCAGGCCTTTGGGGGCCGGGCCCAGGCCCGTAGCCGTGGCCG
TGGTTTCAGAGAGTTCACCTTCCGGGGCGGCCGGCCTACAAGCAGCAGTACAAGTGGTCTTTGT
GGCACAGGCGTCCTCGGGTCTCGTGGCATGTACAGTGGTGGCCAGCGCAGTAACCGAGGCAGGG
GCCTGCGTGACTTCCCCCCACCAGAAGACTGCCCCAGAGCCAAGCCAAGACGGCGCATTGCCAG
CGAGACCCACAGCGAGGGCTCCGAGTACGAAGAGCTACCCAAGAGGCGCCGGCAGCGGGGCTCA
GAGCCCAGCCACGAGGGCATGCTCACAGAGAGGGACGAGGGCGCCCTGAAGGACTCATGGCGCT
CCAACAGGACTTACACAGAGGACCAGGGTAGTCTAGACGCCCGCAGCCGGGGACCCCGGACATG
CGGGAGAGCCCTCCCACCTCGCCTGAGCAACTGCAGCTATGGCCGCAGAACCTTTGTTGCCAAA
GAACCTCCCCACTGGCAGAGCAGGAGCCCAGGCAACTCCTGGCAGGAATATGGCTCCTCTGACC
CGTGTGGCCCACGGCGAGCCACTGACAGAGACTACATACCAGACTCCTACCGACACTCTGACAC
ATTTGGCAGCAGGCTTTTTGAGGACAGCCGCACGGAGGACAAGAAGTCCTTTTTCCAAGATGAC
CACGGGGCAGATTCTGAAGGTGCAGAAAACAGGCCCTTCCGTCGGAGGCGGCCACCACGTCAAG
ACAAGCCCCCTCGCTTCCGGCGCCTCCGTCAAGAGCGAGAGTCCCTAGGCCTGTGGGGACCTGA
AGAAGAGTCCCATCTGCTGGCAAGCCAGTGGCCAGGCCGGTCCAAACTCTGTCCTGGGGACAAG
AGTGGTCCTGGAGGTCACAGATCCCCAGAGCTTTCCTACCAGAATTCTTCTGATCACGCCAATG
AAGAGTGGGAGACCGCCTCCGAGAGTAGCGACTTCAGCGAGCGTAGGGAGCGGCGAGAAGGCCT
CGCAGCTGAACCTGAAGCACAAGGGGATGGTGGCCTCTCTGGGGCCAGTCTGGGTGAAAAGAAA
GAGCTGGCCAAGAGGAGCTTCTCCAGCCAGAGGCCCCTGGCTGACAGACAGAGCCGCAAGCTGG
AGCCGGGAGGGTTTGGGGAGAAGCCTGTTAGGCCAGGTGGGGGTGAGACTTCCCCCCGCTGCGA
GAGCCAGCAGAGTGGGACGCCTCTGAAAGTCAAAAGGTCTCCAGATGAGGCCTTGCCTGGAGGC
CTTGGAAGCCATTCACCCTATGCCTTGGAGAGGACCACTCATGGCAGCTCTGACGGTTCTGAAA
CTACCAGTAAGAAAACAGAGAAAGAGGTTTCTTTGGCTGCCCAGAGGGCTGGTGAGCAGGAAGA
GGCCCGGAAGCAGTTTGACCTGGGCTATGGAAATGCTATCATTGACAACTGTGGTTCCAGCCCT
GGGGAAGAGAATGAAGTAGGCTCCATGGTGGGCGAAGGCTTCATCGAAGTCCTGACCAAGAAGC
AGCGCCGCCTGCTGGAGGAGGAGAGAAGGAAAAAAGAACAGGCTGCTCAGGTCAAAGGTCGAGG
CCTTTCCTCACGGATTCCTCCTCGCTTTGCTAAAAAGCAGAATGGCCTGTGTCTGGAGCAAGGA
GACGTGGCCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTGGGAGAGCAGCAGCCAAGCCCTCC
CTGTGCAGGGCGCCGCCAGCGACTCTTGGAGGACAGCTGTCACTGCCTTCAGCAGTGCTGAGCC
TGGCACCTCAGAGCAGGGTTTTAAGAGCAGCCAGGGAGATAGTGGTGTTGACTTGAGCGCGGAG
TCTCGGGAGTCGTCTGCGACCTCCTCACAGCGCAGTTCCCCTTATGGTACTCTCAAGCCAGATG
AGATGAGTGGGCCTGGCCTGGCGGAATCCAAGGCCGACAGCCACAAGGACCAAGCTCAGAAGCA
GTCTGAGCACAAGGACTCAGAACAAGGCTCTGGACAGAGCAAGGAACACAGACCAGGACCCATC
GGCAATGAGCGGTCTCTGAAAAACAGAAAGGGCTCGGAAGGGGCCGAGCGGCTACAAGGGGCCG
TCGTCCCGCCTGTTAATGGGGTAGAGATTCATGTGGACTCCGTGCTGCCTGTGCCGCCCATCGA
GTTTGGAGTCAGTCCAAAAGACTCTGATTTCAGCCTGCCACCTGGGTCTGTTTCTGGTCCCGTG
GGGAATCCAGTCGCCAAGCTTCAGGATGTCTTGGCTAGTAATGCAGGACTGACACAGAGTATTC
CCATCCTTCGGCGGGATCACCACATCCAGAGAGCCATCGGCCTCTCCCCCATGTCTTTCCCCAC
TGCAGACCTCACGCTGAAGATGGAGTCTGCACGCAAGGCTTGGGAAAACTCCCCCAGTTTGCCG
GAGCAGAATTCTCCAGGCGGTGCAGGCTCGGGCATCCAGCCTCCATCCTCTGTGGGCGCCTCCA
ACGGGGTCAACTACAGCTCCTTTGGTGGCGTGTCAATACCGCCCATGCCCGTGGCTTCTGTAGC
GCCTTCTGCTTCGATGCCAGGCAGCCACCTCCCACCTCTGTACTTGGATGGCCACGTTTTTGCA
AGTCAGCCCCGACTGGTTCCTCAGACGATACCTCAGCAACAGAGTTACCAGCAGGCCGCCACTG
CCCAGCAGATCCCGATATCCCTTCACACGTCTCTGCAGGCACAGGCGCAGCTTGGGCTGAGGGG
TGGACTTCCCGCCTCCCAGTCCCAGGAGATCTTCAGCTCCCTGCAGCCTTTCAGGTCTCAGGTG
TACATGCACCCCAGCCTGTCACCACCCAGCACTATGATCCTCTCTGGGGGCACGGCCTTGAAAC
CCCCATACTCTGCATTTCCCGGCATACAGCCCTTGGAGATGGTGAAGCCACAATCTGGCTCACC
CTACCAGCCCATGAGTGGAAACCAGGCCCTGGTCTATGAGGGCCAACTCGGCCAGGCTGCTGGG
CTGGGTGCCTCCCAGATGCTGGACTCCCAGCTCCCACAGCTAACTATGCCACTGCCTCGGTATG
GCTCCGGGCAGCAGCCACTGATCCTGCCACAGTCCATTCAGCTGCCTCCAGGACAGAGTCTCTC
CGTTGGAGCCCCCCGGAGGATTCCTCCACCTGGCTCCCAACCACCAGTCCTGAACACCAGCAGA
GAGTCCACTCAGATGGAGTTGAAAGGCTTCCACTTTGCCGACAATAAACAGAATGTTTCTACCG
GAGGCTCCGCACCATCCCCGCAGGCCTACAGGCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTC
TGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTTCAACAGGCCAAGCGAGTGGAT
GAAAAGCCCAGTCTGGGAACCGTGAAGCTGCAGGAGGCCTCTTCAGCCACCTCCCAGATGAAGC
GAACTGGAGCAATCAAGCCACGGGCAGTCAAGGTGGAGGGGAGTAAAGCCTGAAGGTGCCTGGC
ATCTCTTGCCTCACCCTAACAGGGATGGTGCACCACACCAGCTTGGACAGCCACCACCTGGGAC
TTGCCAGATCCACCGTCCCACTGTCCTACCACCTGGCCTGGACAGAGCTCTCTTCCACTCCCGA
AAGCTCCTGAAAGTTCCATCGTCAGCCATCCCACATCGTGGATATATGGCATTGACCTGCTTGC
TTTGGTACAAAAGAGCAGACTCCCTCCTTCCCGCCCCTCTGCCCGGTGACTGTGGAGTGAGCCT
CAGTGCAGTGCAGACCTGCCTGCCCGCCCCGTTCCCTAGGCACAGTGGTTTGGCAGCAGGGTCA
TTTTAGCTGGAGGCTTTTTTGTTTTAAAAAGCAGCTAAGGTTTTTACAAAGGGGAAATGAGAAC
AAAATGCTAGCTACGTCTGTATAGCTGAACTTTTATACAGTCCTCGCTGTCCTCTCTGCTCTGC
TGTCCCCAGTGGTCGCCTTTTATCTCTGTCCTGTTTGACATGTCACAGCGCTACCTTAAGAGGT
GATTCTTAAGAGTCACAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACAC
ACACACACACACACACACACACACACACACACACACACAGGTTGGCTAATCTTTGGGGTTTGGA
GGACATGAATGGACACTCTGGTTGGCCCCTAACCATCTTGGGCACTGTGAAGTTGGTATCTGAG
TTTAGCTCCAGCCGCTGGCATGGAGTTAATGTTCCAGAATAAGAATGATCTGTTCTGGGCCCTT
CTGCTGTCGTGGGGCACACTGAGTACTGCACACCAGAGGAATGTTGGAGTTAGTCACCATTTTG
TAATCCAGATTGGCCCCACTCGGGGACTGTGAGCTAAGGCTCCGTGCTTTAGCCCCTTGGGTGG
CTTTGTTCCCCACTCACTTCCTTTCCTCTTTGTGCAGCCTGCTGTGTCCGTCTGGATCCCTGTC
CATCCATCCACCCCTCATGGCTTATCACCAGAATCAATATAAGGACACAGGTAGACACCCATTA
ACCAAGTTTGCCACAGGAAAGACTGTGGCGCTCATCTTGTGTCCTTCACCCGTGGCAGCAGGGC
AGGCTGTTGGGGGTAGGGTTGCCAAGCAACAAGTGTGTTACCCTTCCTTAGAGAACTGGGCGGG
GTCAAGGTATAAGAGGGCCTGCAGAGAAGCCTATACAGCCTCCCTCAGAGGGTGGCGTCTTCCA
CTGCTGCTGTTTGTGTGAGCTCCTGTGTGCGAAGCTTCTTGCTTCCACTAAGAACGAGGAAGTT
TCCCCGTTGCTCAAAGGAGAATGAAGGGGGATTTCAGGGTGCTCAGCTGCTGTCTGGGATCCCC
ATTTAATCATCCGCCTGGGGATGCTGAAGACTGACTGCTTCAAAGAGCTCACAGTTGGACAAGG
GCTGGGACAAATGTGTGGGTCTGTCCTCAAGTGTCACCAGGGGCATGAGAGCAGAAATGCAGCT
TAGGAGCTCTGAAGTGGCTTCGCCCTGTCTAGTTGGTTGCTGGAAGGAAGCACAAGTCTCCCCA
GCATTACCAGACAGGGCAGCCTTAGTGCAGAGTTCCATTGCAACTGCAGCAGTCCGCTCCTTCC
TTCTCGCCTCTGCTCTCCGACCTTTGTCCACTCTCTGTCCCATCTCTTCTCTTGCATCCCTCCT
CAAAAGCACTCCACTTAGGAGTCGCTGGCACAGATCTGCCTGTGCCCCTACTGCTCTCCCCTGT
AAGTGTCTGGTTACTGTCCCAGTGATTGAGTCCTCTGCCCCACTGCCAAGCTCTACCCTGTAAG
ACTCAGTAAAAGCCACACAGTCACCTCTACCTGTCCTCCTTAGAAATGCGGCCAGACCCACCTC
ACCTAATGCTTGGTGGGCATGTGTCAAAAGAAGCAAACATTTTCTCCTTCAGAATTTTCACAGG
ATGCTGTTACAAACTCAAAGTGTGCCCTTTAGGTGAGCCTGCTGTCAGAATGGCAGTACTCCCT
GTTAAGAAAAATTAGGAGGTCACCTGTTTTCAGTCCTTTCTCACCCTGTATTTCCCTCCTGCCT
CCCACCCTAAATAAAAACAAGAAACACTAGAATTTATTTATATGTATTGATGTTGTAGGTCTAG
ATGGAAAAAAAAGTAAATGTCCCACTGCTCTGTTTATATAATGTCTGAATTACTCTGCAGGGAA
GGCCAGGAAATTGCATGTGAAATTTGGTGTGCTCATCACCTCTGTGGTCTCGGCTGTGGGCCCC
TCCCCTCTGAGAGGCACATTTGCAACTAGACTCTGGGGACAGAGGGCAGGCTTCAGGCCAAAGG
TCCCTGCCCTCAGATGATCTGGTTAAGCCAAGGTTTTAGTACAGAGGTTTTAAGGTGCAATATC
TATCTCTTCATGTGGTTGTTAGAGTCAAGCTCAAAGTGTAATAGGACTTGGGCCTTATTTTGGT
TTCAAACCCCCATCTTCAGATCACACATAAAAACAGGAACGTCTGTCAAGGTGCCATGGCCTTT
GGTGGGAACAGATAAAGCCCAGTCCCTGCCTTTTCTACTGCTGAGATGGGTGGAGGTGGGCAGA
ATCCTTTACTCCTGTCTGCTGAAGCCACCTCCTCCTGCCAGTGGCTTCACTGGTGCCACTGACG
GTGAAATCCATGGTTTGGCAACCAGGACTCTTCAGTCTGTTGGTCCTGATGCAGCGTGTAGCAT
CTGTTGGTGATGACTTCCGCCAGCTGTATTTAGTCTGGTCTCTCAGCAGTTGCTTTCCTTGTCT
TATTCCCAAGTTTACCATCTTCAAGTTCAGAGTTCACAGGACACTTCTGGGTCTGATTCCTTAC
GGGGAATAAATAGCAGGTGGCTGCTGTGCACGTTCAGAAAAGCTGGTTCATTTTCAAAGCCAGG
GCTGCTCTGCTGCTTCTAGATTCTTGGATAATGTGTCAACGTCAACCTTGCCGTTCTGTCTTCT
GGAGCCACCTTCCAGAGGGTCCATGATGAAGTCATGAAGGATTTGACACCTAGGGCCCAGGGCA
CAAGGGTGTGCCCACTGAGGCCATGAGGCAACTCTGGCTAAGTCTGCCCCGAAACATCCTGCAT
GTTTCCTTTCAGTCTACCTTGCCCTCATTCCCAGCAAGTCTGGGTTAGAGGGTCCGGGGGAATC
TTACAAGCAAGGGCACAGGAGTCCATCTTCTGTTTTCTTTGATGAGTGGGGAAGCGAGCTCTTT
TGTGAGATGGCTCTAAGACAAGTTAGGTCATTTGGAACAGACTCATCGGTGTTGGTTGGGGACG
AGCACAGTCACCCAGCTGTGCTCTCCACTAGGCCTACTAGCTCTGACTAGTGATCTTCCAGGCG
CATGACACCTGCAGCTCCCAGTTGCCTGCTTCAGACCTGCAACGTCCCCAGGCCCCGTCTTTGG
CATGTCACAGTCTCGGAGCAGCAGGTCCTGTGGAGGCTCTGCAGGCTCCTGTTGGAAAGGGGTC
CTGTGCCCTCAGCTGCTTTCCAACTCATACCTTTTGTAGAAAAGGACTTGGGGGGGGGGGGTTG
TTCTTTTTGAGGGTCCTTTTGTTTCTTTTGCTTTTCTTTTGGCCTTCCCTCTGTCTTTCACTTA
GACCAGCTATCTGAAAGGGCAGACGATGCTAAAAGTGTCCTGTGCAGCTTGTTTAGACGTGATA
TGGGGAACCTCTTACTTCGGATGGGAAATGGAATCGTGAAATCACCCTCCCTTCCCTCCGGGTC
AGTCCCTGTTGTTTCTCCTTTCAAATATGTGATTGTACTAGGTCTTTCCATATGAAAGAACTCT
CCTTATTTAAATAAAAAAAGTCTAAAAAAAATAAAGCCAAACATGCTTTCTCA

hide sequence

RefSeq Acc Id:

XM_039104754 ⟹ XP_038960682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,831,378 - 35,916,854 (+)	NCBI
mRatBN7.2	3	15,433,628 - 15,517,355 (+)	NCBI

RefSeq Acc Id:

XM_039104755 ⟹ XP_038960683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,831,017 - 35,916,854 (+)	NCBI
mRatBN7.2	3	15,433,357 - 15,519,105 (+)	NCBI

RefSeq Acc Id:

XM_039104756 ⟹ XP_038960684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,831,017 - 35,916,854 (+)	NCBI
mRatBN7.2	3	15,433,357 - 15,519,105 (+)	NCBI

RefSeq Acc Id:

XM_039104757 ⟹ XP_038960685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,831,019 - 35,916,854 (+)	NCBI
mRatBN7.2	3	15,433,357 - 15,517,355 (+)	NCBI

RefSeq Acc Id:

XM_039104758 ⟹ XP_038960686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,831,019 - 35,916,854 (+)	NCBI
mRatBN7.2	3	15,433,357 - 15,517,359 (+)	NCBI

RefSeq Acc Id:

XM_039104759 ⟹ XP_038960687

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,831,019 - 35,916,854 (+)	NCBI
mRatBN7.2	3	15,433,357 - 15,519,105 (+)	NCBI

RefSeq Acc Id:

XM_063283492 ⟹ XP_063139562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,831,017 - 35,916,854 (+)	NCBI

RefSeq Acc Id:

XM_063283493 ⟹ XP_063139563

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,831,019 - 35,916,854 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001127990	(Get FASTA)	NCBI Sequence Viewer
	NP_001358199	(Get FASTA)	NCBI Sequence Viewer
	XP_006234067	(Get FASTA)	NCBI Sequence Viewer
	XP_038960682	(Get FASTA)	NCBI Sequence Viewer
	XP_038960683	(Get FASTA)	NCBI Sequence Viewer
	XP_038960684	(Get FASTA)	NCBI Sequence Viewer
	XP_038960685	(Get FASTA)	NCBI Sequence Viewer
	XP_038960686	(Get FASTA)	NCBI Sequence Viewer
	XP_038960687	(Get FASTA)	NCBI Sequence Viewer
	XP_063139562	(Get FASTA)	NCBI Sequence Viewer
	XP_063139563	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93254	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013546
	ENSRNOP00000013546.8
	ENSRNOP00000063117
	ENSRNOP00000063117.4
	ENSRNOP00000075535
	ENSRNOP00000075535.3

RefSeq Acc Id:	XP_006234067 ⟸ XM_006234005
- Peptide Label:	isoform X1
- UniProtKB:	D3ZZ51 (UniProtKB/TrEMBL), D3ZY45 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDRLGQITQGKDGKSKYSTLSLFDKYKGRSVGAVRSSVIPRHGLQSLGKVATARRMPPPANLP SLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSVTASQLPESQPQPGLQKSVSNLQKPTQS ISQENTSSVPGGPKSWAQLSGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGALD LSYGPGPSLRPQNVSSWREGGGRNIISAVSLSASPTELGSRNSSGGDGASSSACTSDSKDPSLR PAQPSRKGASQFMGHVYQPPTYHDMLPAFMCSPQSSENQNTVERSSFPLPQLRLEPRVPFRQFQ MNDQDGKERPGVARPVRPLRQLVERAPRPTIINAENLKGLDDLDTDADDGWAGLHEEVDYSEKL KFSDDEDEEDVVKDGRSKWNNWDPRRQRALSLSSADSTDAKRTQEEGKDWSGTAGVSRVVRKVP EPQPPSRKLHSWASGPDYQKPTMGSMFRPQSIEDKEDKPPPRQKFIQSEMSEAVERARKRREEE ERRAREERLAACAAKLKQLDQKCRQAQKASETPKPVEKEVPRSPGIEKLSPPENGPVVRKGSPE FPVQEAPTMFLEETPATSPTVAQSNNSSSSSSSSIEEEVREAGSPAQEFSKYQKSLPPRFQRQQ QQQQQQQQQQQQQQQQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWMMMPS YMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLSGTGCRSEDQNCVPSLQERKVTAIDPAPV WSPEGYMALQNKGYSLSHPKSADTLAMGMHVRNERSYCASPGRSGGISAQRDLFEERGEEFLSA FDKKAQADFDSCISSQRIGQELLFPPQENVQEVGAPGGCTPNLRCSPLEPDFVPAEKKPECGSW DVGHQPKAADMANSVELEAPRQEPSFHVSSWEKEGSPKKQPNPEPEWTPEPRSSSGQQQEQPGR TRRSGPIKKPVLKALKVEEKEKALERVRQGLGEESSQRATEKEPPCRAEEDEDEENNPALANAS SALEDKAAARGGFGHEASKLDEEAKTDKTWESRPSREASEIPPPKRNNWIFIDEEQAFGGRAQA RSRGRGFREFTFRGGRPTSSSTSGLCGTGVLGSRGMYSGGQRSNRGRGLRDFPPPEDCPRAKPR RRIASETHSEGSEYEELPKRRRQRGSEPSHEGMLTERDEGALKDSWRSNRTYTEDQGSLDARSR GPRTCGRALPPRLSNCSYGRRTFVAKEPPHWQSRSPGNSWQEYGSSDPCGPRRATDRDYIPDSY RHSDTFGSRLFEDSRTEDKKSFFQDDHGADSEGAENRPFRRRRPPRQDKPPRFRRLRQERESLG LWGPEEESHLLASQWPGRSKLCPGDKSGPGGHRSPELSYQNSSDHANEEWETASESSDFSERRE RREGLAAEPEAQGDGGLSGASLGEKKELAKRSFSSQRPLADRQSRKLEPGGFGEKPVRPGGGET SPRCESQQSGTPLKVKRSPDEALPGGLGSHSPYALERTTHGSSDGSETTSKKTEKEVSLAAQRA GEQEEARKQFDLGYGNAIIDNCGSSPGEENEVGSMVGEGFIEVLTKKQRRLLEEERRKKEQAAQ VKGRGLSSRIPPRFAKKQNGLCLEQGDVAVPGSSLGTEIWESSSQALPVQGAASDSWRTAVTAF SSAEPGTSEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPDEMSGPGLAESKADSHKD QAQKQSEHKDSEQGSGQSKEHRPGPIGNERSLKNRKGSEGAERLQGAVVPPVNGVEIHVDSVLP VPPIEFGVSPKDSDFSLPPGSVSGPVGNPVAKLQDVLASNAGLTQSIPILRRDHHIQRAIGLSP MSFPTADLTLKMESARKAWENSPSLPEQNSPGGAGSGIQPPSSVGASNGVNYSSFGGVSIPPMP VASVAPSASMPGSHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQAATAQQIPISLHTSLQAQAQ LGLRGGLPASQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGIQPLEMVKP QSGSPYQPMSGNQALVYEGQLGQAAGLGASQMLDSQLPQLTMPLPRYGSGQQPLILPQSIQLPP GQSLSVGAPRRIPPPGSQPPVLNTSRESTQMELKGFHFADNKQNVSTGGSAPSPQAYRPSSASP SGKPSGSAVNMGSVQGHYVQQAKRVDEKPSLGTVKLQEASSATSQMKRTGAIKPRAVKVEGSKA hide sequence

Ensembl Acc Id:

ENSRNOP00000063117 ⟸ ENSRNOT00000066368

Ensembl Acc Id:

ENSRNOP00000013546 ⟸ ENSRNOT00000013546

Ensembl Acc Id:

ENSRNOP00000075535 ⟸ ENSRNOT00000088576

RefSeq Acc Id:	XP_038960684 ⟸ XM_039104756
- Peptide Label:	isoform X3
- UniProtKB:	D3ZY45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960683 ⟸ XM_039104755
- Peptide Label:	isoform X2
- UniProtKB:	D3ZY45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960687 ⟸ XM_039104759
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038960686 ⟸ XM_039104758
- Peptide Label:	isoform X6
- UniProtKB:	A6JU43 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960685 ⟸ XM_039104757
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2KAU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960682 ⟸ XM_039104754
- Peptide Label:	isoform X1
- UniProtKB:	D3ZZ51 (UniProtKB/TrEMBL), D3ZY45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001127990 ⟸ NM_001134518
- Peptide Label:	isoform 2
- UniProtKB:	A6JU43 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001358199 ⟸ NM_001371270
- Peptide Label:	isoform 1
- UniProtKB:	D3ZY45 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000086230 ⟸ ENSRNOT00000115910

RefSeq Acc Id:	XP_063139562 ⟸ XM_063283492
- Peptide Label:	isoform X4
- UniProtKB:	D3ZY45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139563 ⟸ XM_063283493
- Peptide Label:	isoform X7

Protein Domains

BAT2 N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZZ51-F1-model_v2	AlphaFold	D3ZZ51	1-2232	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1595906	AgrOrtholog
BioCyc Gene	G2FUF-50159	BioCyc
Ensembl Genes	ENSRNOG00000010217	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013546	ENTREZGENE
	ENSRNOT00000013546.8	UniProtKB/TrEMBL
	ENSRNOT00000066368	ENTREZGENE
	ENSRNOT00000066368.6	UniProtKB/TrEMBL
	ENSRNOT00000088576	ENTREZGENE
	ENSRNOT00000088576.3	UniProtKB/TrEMBL
InterPro	BAT2_N	UniProtKB/TrEMBL
	PRRC2	UniProtKB/TrEMBL
NCBI Gene	296637	ENTREZGENE
PANTHER	PROTEIN PRRC2B	UniProtKB/TrEMBL
	PTHR14038	UniProtKB/TrEMBL
Pfam	BAT2_N	UniProtKB/TrEMBL
PhenoGen	Prrc2b	PhenoGen
RatGTEx	ENSRNOG00000010217	RatGTEx
UniProt	A0A0G2KAU9	ENTREZGENE, UniProtKB/TrEMBL
	A6JU43	ENTREZGENE, UniProtKB/TrEMBL
	D3ZY45	ENTREZGENE, UniProtKB/TrEMBL
	D3ZZ51	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-28	Prrc2b	proline-rich coiled-coil 2B	Bat2l	HLA-B associated transcript 2-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-12-15	Bat2l	HLA-B associated transcript 2-like	LOC296637	similar to HLA-B associated transcript-2 isoform a	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC296637	similar to HLA-B associated transcript-2 isoform a			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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