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Gene: Sowahc (sosondowah ankyrin repeat domain family member C) Rattus norvegicus

Analyze

Symbol:

Sowahc

Name:

sosondowah ankyrin repeat domain family member C

RGD ID:

1595666

Description:

Orthologous to human SOWAHC (sosondowah ankyrin repeat domain family member C); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Ankrd57; ankyrin repeat domain 57; ankyrin repeat domain-containing protein 57; ankyrin repeat domain-containing protein SOWAHC; ENSRNOG00000064749; LOC503306; similar to ankyrin repeat domain 43

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	27,738,247 - 27,742,713 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	27,736,326 - 27,752,912 (+)	Ensembl				GRCr8
mRatBN7.2	20	27,195,198 - 27,199,664 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	27,193,743 - 27,265,018 (+)	NCBI				mRatBN7.2
mRatBN7.2 Ensembl	20	27,193,743 - 27,265,018 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	28,205,027 - 28,209,490 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	27,591,276 - 27,595,739 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	28,335,910 - 28,340,373 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	28,815,039 - 28,819,505 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	28,815,039 - 28,819,505 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	30,621,651 - 30,626,117 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	20	28,637,601 - 28,642,067 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

14-Deoxy-11,12-didehydroandrographolide (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

ciglitazone (ISO)

cisplatin (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

hydrogen peroxide (ISO)

lead diacetate (ISO)

lead(0) (ISO)

leflunomide (ISO)

methapyrilene (EXP)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

pentanal (ISO)

phenobarbital (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

sperm annulus (ISO)

sperm flagellum (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Sowahc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	27,738,247 - 27,742,713 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	27,736,326 - 27,752,912 (+)	Ensembl				GRCr8
mRatBN7.2	20	27,195,198 - 27,199,664 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	27,193,743 - 27,265,018 (+)	NCBI				mRatBN7.2
mRatBN7.2 Ensembl	20	27,193,743 - 27,265,018 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	28,205,027 - 28,209,490 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	27,591,276 - 27,595,739 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	28,335,910 - 28,340,373 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	28,815,039 - 28,819,505 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	28,815,039 - 28,819,505 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	30,621,651 - 30,626,117 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	20	28,637,601 - 28,642,067 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

SOWAHC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	109,614,364 - 109,618,990 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	109,614,364 - 109,618,990 (+)	Ensembl			hg38	GRCh38
GRCh37	2	110,371,941 - 110,376,567 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	109,729,200 - 109,733,853 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	109,729,266 - 109,733,938	NCBI
Celera	2	104,540,692 - 104,545,345 (+)	NCBI		Celera
Cytogenetic Map	2	q13	NCBI
HuRef	2	103,828,168 - 103,832,695 (+)	NCBI		HuRef
CHM1_1	2	110,376,100 - 110,380,753 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	110,075,428 - 110,080,054 (+)	NCBI		T2T-CHM13v2.0

Sowahc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	59,057,744 - 59,062,256 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	59,057,775 - 59,062,256 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	59,221,922 - 59,226,434 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Cytogenetic Map	10	B4	NCBI
cM Map	10	29.5	NCBI

Sowahc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955470	12,699,007 - 12,702,332 (+)	NCBI	ChiLan1.0	ChiLan1.0

SOWAHC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	18,075,251 - 18,079,935 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	18,078,016 - 18,082,684 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	92,022,729 - 92,027,408 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	111,330,579 - 111,335,443 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	111,330,744 - 111,332,520 (+)	Ensembl			panPan2	panpan1.1

SOWAHC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	34,242,671 - 34,247,090 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	34,245,321 - 34,246,937 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	34,167,340 - 34,171,881 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	35,096,671 - 35,101,243 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	35,099,635 - 35,101,098 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	34,825,390 - 34,829,943 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	35,106,772 - 35,111,318 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	35,297,531 - 35,302,073 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sowahc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	91,303,509 - 91,307,857 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936536	8,998,668 - 9,002,717 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SOWAHC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	46,547,226 - 46,552,659 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SOWAHC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	13,139,539 - 13,144,205 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	13,139,712 - 13,141,307 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666080	6,549,572 - 6,554,309 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sowahc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	12,393,156 - 12,396,854 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sowahc
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	25,173,740 - 25,176,991 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sowahc
50 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	398
Count of miRNA genes:	221
Interacting mature miRNAs:	289
Transcripts:	ENSRNOT00000075800
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	67	165	91	90	59	92	59	6	355	191	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000075800 ⟹ ENSRNOP00000065532

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	28,815,039 - 28,819,505 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096750 ⟹ ENSRNOP00000085306

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,737,366 - 27,748,718 (+)	Ensembl
mRatBN7.2 Ensembl	20	27,193,743 - 27,265,018 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135026 ⟹ ENSRNOP00000108632

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,736,326 - 27,750,803 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137089 ⟹ ENSRNOP00000104204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,737,627 - 27,749,573 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137215 ⟹ ENSRNOP00000102659

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,737,648 - 27,740,407 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137683 ⟹ ENSRNOP00000100993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,737,444 - 27,752,912 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149190 ⟹ ENSRNOP00000108320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,737,627 - 27,751,535 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153069 ⟹ ENSRNOP00000109325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,737,649 - 27,742,713 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162263 ⟹ ENSRNOP00000104360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,737,734 - 27,752,912 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166759 ⟹ ENSRNOP00000100552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,737,896 - 27,740,407 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167852 ⟹ ENSRNOP00000100973

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	27,737,861 - 27,751,535 (+)	Ensembl

RefSeq Acc Id:

NM_001109364 ⟹ NP_001102834

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	27,738,247 - 27,742,713 (+)	NCBI
mRatBN7.2	20	27,195,198 - 27,199,664 (+)	NCBI
Rnor_6.0	20	28,815,039 - 28,819,505 (+)	NCBI
Rnor_5.0	20	30,621,651 - 30,626,117 (+)	NCBI
Celera	20	28,637,601 - 28,642,067 (+)	RGD

Sequence:

show sequence

ACTGTGATCCAGACGCTCTTCGGGTCCTCCTGACGTCCGGCCATGGTGTCCGGCTGAGCTGTCC
TGGTGCTGAGAAGCTGAGCCGCGGTGAATGGCGGGGTCCCTGGAGCCAAGCTCTGAGGCGGTCC
TGCGCTTTCTCGCCGAGCGCGGGGGCCGGGCCCGACACTCGGAATTGGTGCAACACTTCAGGGA
CGCCCTGTGTGGCAAGCGCGAACAGCGCACCCGCGCCCGCGAACACTTCAAGGAACTGGTCAAC
GCAGTGGCCACCGTGCGCACCGATCCCGCGGATGGTACCAAGTATGTGCATCTCAAGAAAAGGT
TCTGTATGGGGGAGTCCCCTCCGCTTGAGGCCGCGCTCCCCCAACAACTCCCGCGCATCGAGGT
GACTGAGGAGCCTCAAGTCCCGGACCTTCCAGCGAAACCATGCGAGGGCAGCCAGCCTCCGGTG
GAGGCAGATCCACAGTTGTCTCTCGGAGTGGGCGGCGGACTGAGCCACCAGAAGCCTCCGGCGG
CTGCTCAAGGTGGGGCCCAGAGTAAAGACTCGCCACGGGAGGTCGAGGCCGTGTCGTGGGCGCC
GGGCCCCGGATCCAGTGAGAACCTTAAACTCCCTCCACATGGCGGTGAGGAGGCTGAAGGGGGC
AGTTCCCCTAGTGTGCCAAATACGCCCAGGTCGGCCCGTCAGAACTTTCGGGACCTGGTGATGG
GCAGCTCCCCGCAACTAAAGAGGAGCGCGGGTCCTGGGGACGGTAGCGCTGGGAGCATCTCCTC
AGGAGGTCGCAGCAGAGGAGGGGCCGACTCCGATAGCACCTCGTTAGCGTCTTCATCCGCAGAA
GAGGAGAGCAGCGGCGGAGGCTCGGTTACCCTGGATCCTCTTGAGCACGCCTGGATGCTCTCAG
CTTCCGAGGGCAAGTGGGACAGCCTAATAGGGCTGCTCACTTGTGAGCCCGGCCTGCTCTCGAA
GCGAGACTTCATCACCGGCTTCACTTGTCTCCACTGGGCGGCCAAGCACGGCAGGCAGGAGCTC
CTGGCCATGTTGGTCAACTTTGCCACCAAACACCACCTGCCAGTGAACATCAATGCCAGGTCGA
GCGGAGGCTACACTGCCCTACATTTGGCAGCGATGCATGGGCATGTAGAGGTGGTGAAGTTACT
AGTGGGAGCCTACGACGCAGATGTAGACATCAGGGACTACAGCGGGAGAAAGGCCTCTCAGTAT
CTGAGTGAGAGCATTGCAGAGGAGATAAAGAACCTGGTGGGAGCCCTGGACGAAGACGATGGAG
ACAGCGCTGCCGGCCGCGGGAGTGGACGCTGGAGACTTTCAAAGGTGCTCCCATCACACATCAC
TCACAAACTCTCCCCGGTCGTGGAAGACGGAGCTGACCATCACCACCACCTCGCCGAGGGATGG
ACTGGAGGAAGCAAAGCAAAAGATTCAGGTCGCAAAGCCTCGGGCAGCTCGAGTGGACGGATAA
AACCACGACTCAACAAAATCCGATTCCGAACCCAGATCATTCACACCACTCCCTCCTTCAAGGA
TGCTGAACCGACACTGGAGGAGGGGGAAGAGGAAGAGGAGGAAAGGCCTCTTCGAGGCTACTCA
TCTTCCTTTAAACTGAGACCGAAGTCCAATGTATTCGGGTAAAAAACAATGGGTGCTAGAAATA
CTAAGGCTTATTTGTCTTCAAGGTAGAGTAATACTGGGTATGGATAAGAAGTGGAGGCAGAAAA
GACAGGATAAATTGCATTTCAACTTCTGGGCTTGGAGTGGATCTGCAATAATCCTTTCCGGATA
GCATTCTGGGGCAAGAAAATGTCTCTGAAGTGATTCATAATGCACTGATTTGTGCCTCTCTCCC
GCCCCACCCTTGTAACCTGGAACTTGTGAGAACTGGAATTATTGATGACTAAGAGTCCCTTTGC
TTTTTAATCATTACTAAGATACCATTCAGAGTAAGGGCCATCAGAAAATGCAAAACTCCTGGTA
ATGCAAACTGAACCTGCTAATTTTGTAAATGAATGAAACTACAGGCTGCCCTGATTTTCTACCA
GTCGCACTTGCTTAAGGTGCTAAAGAAGTCAAGGTCAGAGTTGAAATGTGAAACTGCAAATGAG
AATTATGTGACTGGAGATGGGAATCTACAGATATTATCTGACTTATATTGTAAGTAGCAGTTCC
CTTCCTTTAAAAGCAATTTTATTTTTTAATCACTGGACAGAAGAACTAGGCAGTATTTGCTTTT
GAGTTGCTGTAATCTGGTCTGTGCCTATAACACTATTCAGTATACGGTACATTATTAACCGCAA
ACTTCTGGTTAAGTAGAAGAACATGTAGCAACCTCTGGTACTTTTCTTTAAAGTGAATGTCTTG
TTGATTATCACTAACTTGTTTTGCTACTCTTTAATTCTAAACTTTCTGGGGTTTGTATTCTGGG
GTTTCTTTTTGATGAAGCTTACAATACTTAGACTAATTTACTTATCACCTAAACCATTCCTTGT
TTAGAAAATGGCAAAACTCAGCATAAGTATTAATAAGCCTATGCTTCTGTGAAGTAATTATTAA
ATCAACTTAATATGTTTCTCATGTAAGAGACATTTTAATTTTATTAATACATTCAGAGTCTCTA
TGCTTTGTAGCAACATTTTACAAATGTGCAAAATACTAAATCTTTCACTTTTCTTACGTTTCTT
TGTATCTACTCAAAGAGCTATGGTGTAGTTACAGAAAGCCTAGATAGTCTGCCCATTTAAAAAT
GGGCAATTTATTATACTTTATAAGAAGAAAGAGAAATGGGATCATTTCTGTATTTCAATGCTGC
TAGCTATTGAATTTCCTTATATATAATTGAAAAATACTATTCCTTAAAATTAAAGACCTTTACA
ACTGTGATCCTTAATTACATTCCATTCATTTGTGTTAAGAATAAATGGCTTTATAATTATTTTA
AAAATTAACTTGGAAACGTATTAAATCTGATAGCAAGATTAGAAACTTTTGGGCGAGACTGATT
TGACCAAATCCTTCTCTCTCCGTCTTTCTGGCCTGATTGCTGAAACCTAAGTTGTTAGCACCCA
TAATATAGAGGGCTGAGTGAGCAGCCAAGCCTGCAGAGCGGAGGAGACTGCATGGTTATATAGA
GCTGCACAGCATTTTGTTGTTAAATAACCTTCCCAAGTCATAGAAATTTCTAACAAATTTGTCA
CATCTCAAAATAGCAGTTGTTTAAGTATGGATTGAAGATGCTCATGAAACATATAAATTGTGGC
TAAGGAGATGGTTCAGTGGGTATGAGCACTTGTTCTGCAAGCATGAGGACCTGTGACTGAATCC
CCAGCACCCATCTAAAAGGGTATGTATGCATAGCTGAGGTGATACGGGCAGATCCTCAGAGCCC
AGTGCCAGACAGCCTACCTGAAAGCAATGACTTCTGGATCAGGGAGAGGCTGTCTCCAGGCAGT
AAGAAAGACGTAGAGGAAGTCACCTGACATTCTACTCTGACTTCAGAATAAGCACACATGGGTA
CTCCCAAACATTCTTGTGCCTACACTACACACACACACACACACACAAAGTTGCTACCCACTTA
TGTGCCTTCATCTTTGTTTTAGGATTTAAGAAGTAGATCATGTACATCGATGAGCACTTTTTCT
GTCCACGTAAGTGAAAAGCCAATGTAAAAAGCAATCATGTTCCATGTCTAGACATGTTAACTAT
ATCTAGTGCAGAATAAGCTTACAGTTCTCAAGGACTTTTAAATTCCGTGTTAAGATAAAGCAAC
TACCATTTGACTTGCTTTTCACAGTAAAGGTTAAAAGCTATGATAAAATATTACATTTTTTCTG
GAGTCATTCAGACAGCTCAGCAGACAAAAATAGTTGTCTTACAAGCTTAAAGACCTGAGCTTGA
CCCTAAAACCCACAGTAGATGGAGAAAACTTAACTGCTGAAAATTGTCCTTCAGCCCCACATGT
GTGCCATGGCATCTACACACCTGTACTCACACGCCTGGCACACAAGCAAACACACAAAGCTAAT
TAGTTTAAATTTCAAAGGCACAAAAAAGGAACTCCAGGCATTCTTGTCATAACATACTTTATGC
AATAAATATAACATTTCAAGCTATATAACTCCATTCCTTTTTTTTTCCAGTTTTCAAATCAAAA
GTAGAAAAAAATCATTTGTATAATTCGATAATCATGAAGTTGTATCTCTCAACAGTGGCAATAC
ATAAATGCAGGCATCTGTTGACAAGAGACTGTAGTTTCAAAACAAGTTTATGTGTATGCTTGAA
GCTATGAATGTCAAGTTTGCTTTTATGGTATATAAAGTGCAGCTAATGTGGTACTAGTTTATTC
ACACCTGAAATAATTGGAATATGATGTTTGTCTTTTGCTTTCTTAAGTAAGTGAAAGTTTTCAA
GAAATGTGAATATGTGAAGTTTGTCAAAATAAAATGTTCCTGGTAGAGATC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102834	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93078	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000085306.2
	ENSRNOP00000100552
	ENSRNOP00000100552.1
	ENSRNOP00000100973.1
	ENSRNOP00000100993.1
	ENSRNOP00000102659.1
	ENSRNOP00000104204.1
	ENSRNOP00000104360.1
	ENSRNOP00000108320.1
	ENSRNOP00000108632.1
	ENSRNOP00000109325.1

RefSeq Acc Id:

NP_001102834 ⟸ NM_001109364

- UniProtKB:

A6K3U4 (UniProtKB/TrEMBL), A0A8I5ZZT6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGSLEPSSEAVLRFLAERGGRARHSELVQHFRDALCGKREQRTRAREHFKELVNAVATVRTDP
ADGTKYVHLKKRFCMGESPPLEAALPQQLPRIEVTEEPQVPDLPAKPCEGSQPPVEADPQLSLG
VGGGLSHQKPPAAAQGGAQSKDSPREVEAVSWAPGPGSSENLKLPPHGGEEAEGGSSPSVPNTP
RSARQNFRDLVMGSSPQLKRSAGPGDGSAGSISSGGRSRGGADSDSTSLASSSAEEESSGGGSV
TLDPLEHAWMLSASEGKWDSLIGLLTCEPGLLSKRDFITGFTCLHWAAKHGRQELLAMLVNFAT
KHHLPVNINARSSGGYTALHLAAMHGHVEVVKLLVGAYDADVDIRDYSGRKASQYLSESIAEEI
KNLVGALDEDDGDSAAGRGSGRWRLSKVLPSHITHKLSPVVEDGADHHHHLAEGWTGGSKAKDS
GRKASGSSSGRIKPRLNKIRFRTQIIHTTPSFKDAEPTLEEGEEEEEERPLRGYSSSFKLRPKS
NVFG

hide sequence

Ensembl Acc Id:

ENSRNOP00000065532 ⟸ ENSRNOT00000075800

Ensembl Acc Id:

ENSRNOP00000085306 ⟸ ENSRNOT00000096750

Ensembl Acc Id:

ENSRNOP00000109325 ⟸ ENSRNOT00000153069

Ensembl Acc Id:

ENSRNOP00000108320 ⟸ ENSRNOT00000149190

Ensembl Acc Id:

ENSRNOP00000108632 ⟸ ENSRNOT00000135026

Ensembl Acc Id:

ENSRNOP00000102659 ⟸ ENSRNOT00000137215

Ensembl Acc Id:

ENSRNOP00000100552 ⟸ ENSRNOT00000166759

Ensembl Acc Id:

ENSRNOP00000100973 ⟸ ENSRNOT00000167852

Ensembl Acc Id:

ENSRNOP00000100993 ⟸ ENSRNOT00000137683

Ensembl Acc Id:

ENSRNOP00000104360 ⟸ ENSRNOT00000162263

Ensembl Acc Id:

ENSRNOP00000104204 ⟸ ENSRNOT00000137089

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R7U6-F1-model_v2	AlphaFold	M0R7U6	1-516	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701586

Promoter ID:

EPDNEW_R12109

Type:

single initiation site

Name:

Sowahc_1

Description:

sosondowah ankyrin repeat domain family member C

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	28,815,039 - 28,815,099	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1595666	AgrOrtholog
BioCyc Gene	G2FUF-3777	BioCyc
Ensembl Genes	ENSRNOG00000048831	Ensembl
	ENSRNOG00000064749	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000096750.2	UniProtKB/TrEMBL
	ENSRNOT00000135026.1	UniProtKB/TrEMBL
	ENSRNOT00000137089.1	UniProtKB/TrEMBL
	ENSRNOT00000137215.1	UniProtKB/TrEMBL
	ENSRNOT00000137683.1	UniProtKB/TrEMBL
	ENSRNOT00000149190.1	UniProtKB/TrEMBL
	ENSRNOT00000153069.1	UniProtKB/TrEMBL
	ENSRNOT00000162263.1	UniProtKB/TrEMBL
	ENSRNOT00000166759	ENTREZGENE
	ENSRNOT00000166759.1	UniProtKB/TrEMBL
	ENSRNOT00000167852.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
InterPro	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
KEGG Report	rno:503306	UniProtKB/TrEMBL
NCBI Gene	503306	ENTREZGENE
PANTHER	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN SOWAHC	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	Ank_2	UniProtKB/TrEMBL
PhenoGen	Sowahc	PhenoGen
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000048831	RatGTEx
	ENSRNOG00000064749	RatGTEx
SMART	ANK	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48403	UniProtKB/TrEMBL
UniProt	A0A8I5ZZT6	ENTREZGENE, UniProtKB/TrEMBL
	A6K3U4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Sowahc	sosondowah ankyrin repeat domain family member C	Sowahc	sosondowah ankyrin repeat domain family member C	Data merged from RGD:150344990	737654	PROVISIONAL
2022-01-06	Sowahc	sosondowah ankyrin repeat domain family member C	ENSRNOG00000064749		Symbol and/or name change	19259462	PROVISIONAL
2021-08-31	ENSRNOG00000064749				Symbol and Name status set to provisional	45752	PROVISIONAL
2012-07-13	Sowahc	sosondowah ankyrin repeat domain family member C	Ankrd57	ankyrin repeat domain 57	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Ankrd57	ankyrin repeat domain 57	LOC503306	similar to ankyrin repeat domain 43	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC503306	similar to ankyrin repeat domain 43			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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