Rpl34-ps1 (ribosomal protein L34, pseudogene 1) - Rat Genome Database

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Gene: Rpl34-ps1 (ribosomal protein L34, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl34-ps1
Name: ribosomal protein L34, pseudogene 1
RGD ID: 1595454
Description: Orthologous to human RPL34 (ribosomal protein L34).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: AC128960.1; LOC680170; ribosomal protein L34-like 1; Rpl34l1; similar to ribosomal protein L34
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Rpl34  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,783,883 - 79,784,309 (+)NCBIGRCr8
mRatBN7.21774,874,706 - 74,875,132 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1774,874,707 - 74,875,153 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1778,341,210 - 78,341,636 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01782,176,593 - 82,177,019 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01776,224,544 - 76,224,970 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01778,876,111 - 78,876,537 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1778,876,111 - 78,876,537 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01780,517,909 - 80,518,335 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41785,993,417 - 85,993,773 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1774,254,115 - 74,254,541 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl34-ps1
14 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)175724684382046127Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)175900564977910000Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)176570358081153923Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)177100332581153923Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)177177462182479847Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000057895   ⟹   ENSRNOP00000054703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1774,874,707 - 74,875,153 (+)Ensembl
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4W9-F1-model_v2 AlphaFold D4A4W9 1-117 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595454 AgrOrtholog
BioCyc Gene G2FUF-8643 BioCyc
Ensembl Genes ENSRNOG00000038045 Ensembl, ENTREZGENE
NCBI Gene 680170 ENTREZGENE
PhenoGen Rpl34-ps1 PhenoGen
RatGTEx ENSRNOG00000038045 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Rpl34-ps1  ribosomal protein L34, pseudogene 1  AC128960.1    Data merged from RGD:15004271 737654 PROVISIONAL
2019-11-08 AC128960.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2011-06-09 Rpl34-ps1  ribosomal protein L34, pseudogene 1  Rpl34l1  ribosomal protein L34-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-21 Rpl34l1  ribosomal protein L34-like 1  LOC680170  similar to ribosomal protein L34  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680170  similar to ribosomal protein L34      Symbol and Name status set to provisional 70820 PROVISIONAL