Tmem258l4 (transmembrane protein 258 like 4) - Rat Genome Database

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Gene: Tmem258l4 (transmembrane protein 258 like 4) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Tmem258l4 (Ensembl: AABR07040624.1)
Name: transmembrane protein 258 like 4 (Ensembl:transmembrane protein 258 like 2)
RGD ID: 1595433
Description: Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be part of oligosaccharyltransferase complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC680191; similar to UPF0197 protein C11orf10 homolog; transmembrane protein 258-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X103,860,709 - 103,861,011 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2X99,067,744 - 99,069,746 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX99,069,098 - 99,069,337 (-)EnsemblmRatBN7.2
Rnor_6.0X106,606,937 - 106,636,203 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X106,514,955 - 106,515,229 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X123,375,265 - 123,375,562 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Cytogenetic MapXq32NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X80434318125434318Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX92979612117740458Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
sensory system
visual system
1 10 1 2 1 11 1 9 9

Sequence


RefSeq Acc Id: XM_063280429   ⟹   XP_063136499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X103,860,709 - 103,861,011 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063136499 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070069.3
RefSeq Acc Id: XP_063136499   ⟸   XM_063280429
- UniProtKB: A0A0G2JWZ0 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1636 BioCyc
Ensembl Genes ENSRNOG00000058183 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082858.3 UniProtKB/TrEMBL
InterPro TMEM258/Ost5 UniProtKB/TrEMBL
NCBI Gene 680191 ENTREZGENE
PANTHER UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Ost5 UniProtKB/TrEMBL
PhenoGen Tmem258l4 PhenoGen
RatGTEx ENSRNOG00000058183 RatGTEx
UniProt A0A0G2JWZ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-17 Tmem258l4  transmembrane protein 258 like 4  Tmem258l1  transmembrane protein 258 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Tmem258l1  transmembrane protein 258 like 1  LOC680191  similar to UPF0197 protein C11orf10 homolog  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC680191  similar to UPF0197 protein C11orf10 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL