Rnpepl1 (arginyl aminopeptidase like 1) - Rat Genome Database

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Gene: Rnpepl1 (arginyl aminopeptidase like 1) Rattus norvegicus
Analyze
Symbol: Rnpepl1
Name: arginyl aminopeptidase like 1
RGD ID: 1595210
Description: Predicted to enable metalloaminopeptidase activity. Predicted to be involved in proteolysis. Orthologous to human RNPEPL1 (arginyl aminopeptidase like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: aminopeptidase RNPEPL1; arginyl aminopeptidase (aminopeptidase B)-like 1; arginyl aminopeptidase-like 1; LOC684035; similar to arginyl aminopeptidase (aminopeptidase B)-like 1; uncharacterized protein LOC684035
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89100,921,053 - 100,933,748 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9100,923,856 - 100,933,485 (+)EnsemblGRCr8
mRatBN7.2993,476,600 - 93,486,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,472,390 - 93,486,331 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9101,912,233 - 101,921,936 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,048,024 - 107,057,727 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,404,178 - 105,413,881 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,080,144 - 100,089,834 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,080,144 - 100,089,834 (+)Ensemblrn6Rnor6.0
Rnor_5.0999,743,845 - 99,753,161 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera991,012,912 - 91,022,616 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11017071  


Genomics

Comparative Map Data
Rnpepl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89100,921,053 - 100,933,748 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9100,923,856 - 100,933,485 (+)EnsemblGRCr8
mRatBN7.2993,476,600 - 93,486,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,472,390 - 93,486,331 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9101,912,233 - 101,921,936 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,048,024 - 107,057,727 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,404,178 - 105,413,881 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,080,144 - 100,089,834 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,080,144 - 100,089,834 (+)Ensemblrn6Rnor6.0
Rnor_5.0999,743,845 - 99,753,161 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera991,012,912 - 91,022,616 (+)NCBICelera
Cytogenetic Map9q36NCBI
RNPEPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,568,484 - 240,581,372 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,565,804 - 240,581,372 (+)Ensemblhg38GRCh38
GRCh372241,507,901 - 241,520,789 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,156,777 - 241,166,817 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342241,228,093 - 241,238,131NCBI
Celera2235,180,436 - 235,190,476 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2233,265,030 - 233,274,764 (+)NCBIHuRef
CHM1_12241,514,055 - 241,524,200 (+)NCBICHM1_1
T2T-CHM13v2.02241,062,509 - 241,075,397 (+)NCBIT2T-CHM13v2.0
Rnpepl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39192,837,697 - 92,848,307 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl192,838,505 - 92,852,106 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38192,910,377 - 92,920,585 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl192,910,783 - 92,924,384 (+)Ensemblmm10GRCm38
MGSCv37194,807,982 - 94,817,415 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36194,741,811 - 94,750,986 (+)NCBIMGSCv36mm8
Celera195,855,986 - 95,865,434 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.6NCBI
Rnpepl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542898,462 - 906,703 (-)Ensembl
ChiLan1.0NW_004955542897,708 - 906,011 (-)NCBIChiLan1.0ChiLan1.0
RNPEPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213143,249,823 - 143,260,191 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B143,264,808 - 143,275,156 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B127,820,523 - 127,830,863 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B246,631,605 - 246,638,025 (+)NCBIPanPan1.1PanPan1.1panPan2
RNPEPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12550,539,494 - 50,549,141 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2550,543,752 - 50,548,847 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2551,008,739 - 51,018,169 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02550,991,758 - 51,000,006 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2550,991,498 - 51,000,290 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12550,833,800 - 50,842,043 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02550,579,552 - 50,587,780 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02550,856,330 - 50,864,571 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnpepl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303192,160,600 - 192,169,498 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367451,049,924 - 1,058,825 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367451,049,917 - 1,058,817 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNPEPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15139,542,602 - 139,551,250 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115139,542,193 - 139,551,257 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215154,613,163 - 154,622,176 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNPEPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110126,596,889 - 126,606,216 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10126,596,984 - 126,606,290 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604072,789,030 - 72,796,090 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnpepl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248474,897,496 - 4,906,282 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248474,897,496 - 4,905,823 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rnpepl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14164,871,106 - 164,880,657 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rnpepl1
161 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:86
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000071411
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat

Markers in Region
RH135033  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2993,472,637 - 93,472,829 (+)MAPPERmRatBN7.2
Rnor_6.09100,076,919 - 100,077,110NCBIRnor6.0
Rnor_5.0999,741,866 - 99,742,057UniSTSRnor5.0
Celera991,008,997 - 91,009,188UniSTS
RH 3.4 Map9797.5UniSTS
RH137165  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2993,485,878 - 93,486,067 (+)MAPPERmRatBN7.2
Rnor_6.09100,089,382 - 100,089,570NCBIRnor6.0
Rnor_5.0999,752,709 - 99,752,897UniSTSRnor5.0
Celera991,022,164 - 91,022,352UniSTS
RH 3.4 Map9797.79UniSTS
RH139508  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera991,011,125 - 91,011,338UniSTS
RH140342  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera991,011,125 - 91,011,307UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000071411   ⟹   ENSRNOP00000066384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9100,923,856 - 100,933,485 (+)Ensembl
mRatBN7.2 Ensembl993,472,390 - 93,486,331 (+)Ensembl
Rnor_6.0 Ensembl9100,080,144 - 100,089,834 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095673   ⟹   ENSRNOP00000095096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9100,923,856 - 100,933,483 (+)Ensembl
mRatBN7.2 Ensembl993,472,390 - 93,486,331 (+)Ensembl
RefSeq Acc Id: NM_001271177   ⟹   NP_001258106
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,924,055 - 100,933,748 (+)NCBI
mRatBN7.2993,476,638 - 93,486,331 (+)NCBI
Rnor_6.09100,080,144 - 100,089,834 (+)NCBI
Rnor_5.0999,743,845 - 99,753,161 (+)NCBI
Celera991,012,912 - 91,022,616 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039084212   ⟹   XP_038940140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,921,053 - 100,933,484 (+)NCBI
mRatBN7.2993,476,600 - 93,485,636 (+)NCBI
RefSeq Acc Id: XM_063267739   ⟹   XP_063123809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,923,900 - 100,930,858 (+)NCBI
RefSeq Acc Id: XM_063267741   ⟹   XP_063123811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,923,900 - 100,930,858 (+)NCBI
RefSeq Acc Id: NP_001258106   ⟸   NM_001271177
- UniProtKB: M0RA44 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000066384   ⟸   ENSRNOT00000071411
RefSeq Acc Id: XP_038940140   ⟸   XM_039084212
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GLG5 (UniProtKB/TrEMBL),   M0RA44 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095096   ⟸   ENSRNOT00000095673
RefSeq Acc Id: XP_063123809   ⟸   XM_063267739
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123811   ⟸   XM_063267741
- Peptide Label: isoform X3
Protein Domains
Peptidase M1 leukotriene A4 hydrolase/aminopeptidase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RA44-F1-model_v2 AlphaFold M0RA44 1-719 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595210 AgrOrtholog
BioCyc Gene G2FUF-26665 BioCyc
Ensembl Genes ENSRNOG00000045775 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071411 ENTREZGENE
  ENSRNOT00000071411.4 UniProtKB/TrEMBL
  ENSRNOT00000095673 ENTREZGENE
  ENSRNOT00000095673.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.390.10 UniProtKB/TrEMBL
  1.25.40.320 UniProtKB/TrEMBL
  2.60.40.1730 UniProtKB/TrEMBL
  3.30.2010.30 UniProtKB/TrEMBL
InterPro Aminopeptidase_N-like_N UniProtKB/TrEMBL
  Aminopeptidase_N-like_N UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  LTA4H_cat UniProtKB/TrEMBL
  M1_LTA-4_hydro/amino_C_sf UniProtKB/TrEMBL
  M1_LTA4H UniProtKB/TrEMBL
  Peptidase_M1 UniProtKB/TrEMBL
  Peptidase_M1_C UniProtKB/TrEMBL
  Peptidase_M1_dom UniProtKB/TrEMBL
  Peptidase_M4/M1_CTD_sf UniProtKB/TrEMBL
NCBI Gene 684035 ENTREZGENE
PANTHER PTHR45726 UniProtKB/TrEMBL
  PTHR45726:SF2 UniProtKB/TrEMBL
Pfam Leuk-A4-hydro_C UniProtKB/TrEMBL
  Peptidase_M1 UniProtKB/TrEMBL
  Peptidase_M1_N UniProtKB/TrEMBL
PhenoGen Rnpepl1 PhenoGen
PRINTS ALADIPTASE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000045775 RatGTEx
SMART Leuk-A4-hydro_C UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF63737 UniProtKB/TrEMBL
UniProt A0A8I6GLG5 ENTREZGENE, UniProtKB/TrEMBL
  A6JQW6_RAT UniProtKB/TrEMBL
  M0RA44 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-05 Rnpepl1  arginyl aminopeptidase like 1  Rnpepl1  arginyl aminopeptidase (aminopeptidase B)-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-13 Rnpepl1  arginyl aminopeptidase (aminopeptidase B)-like 1  LOC684035  similar to arginyl aminopeptidase (aminopeptidase B)-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC684035  similar to arginyl aminopeptidase (aminopeptidase B)-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL