Uqcr10 (ubiquinol-cytochrome c reductase, complex III subunit X) - Rat Genome Database

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Gene: Uqcr10 (ubiquinol-cytochrome c reductase, complex III subunit X) Rattus norvegicus
Analyze
Symbol: Uqcr10
Name: ubiquinol-cytochrome c reductase, complex III subunit X
RGD ID: 1595126
Description: Predicted to be involved in mitochondrial electron transport, ubiquinol to cytochrome c. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex III. Orthologous to human UQCR10 (ubiquinol-cytochrome c reductase, complex III subunit X); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC685322; similar to ubiquinol-cytochrome c reductase complex 7.2kDa protein isoform b; ubiquinol-cytochrome c reductase complex (7.2 kD); ubiquinol-cytochrome c reductase complex 7.2kDa protein; Ucrc
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Uqcr10-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,789,657 - 83,791,914 (-)NCBIGRCr8
mRatBN7.21479,566,151 - 79,569,017 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,566,157 - 79,569,003 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,996,709 - 83,998,967 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,236,781 - 85,239,039 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,686,458 - 81,688,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,935,480 - 84,937,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,935,486 - 84,937,725 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,614,330 - 85,614,509 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,353,763 - 85,353,942 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1478,471,580 - 78,473,837 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:12865426   PMID:14651853   PMID:15277470   PMID:16120479   PMID:18614015   PMID:23376485   PMID:28844695   PMID:31505169  


Genomics

Comparative Map Data
Uqcr10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,789,657 - 83,791,914 (-)NCBIGRCr8
mRatBN7.21479,566,151 - 79,569,017 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,566,157 - 79,569,003 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,996,709 - 83,998,967 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,236,781 - 85,239,039 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,686,458 - 81,688,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,935,480 - 84,937,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,935,486 - 84,937,725 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,614,330 - 85,614,509 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,353,763 - 85,353,942 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1478,471,580 - 78,473,837 (-)NCBICelera
Cytogenetic Map14q21NCBI
UQCR10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,767,369 - 29,770,413 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,767,369 - 29,770,413 (+)EnsemblGRCh38hg38GRCh38
GRCh372230,163,358 - 30,166,402 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,493,358 - 28,496,402 (+)NCBINCBI36Build 36hg18NCBI36
Celera2213,963,088 - 13,966,132 (+)NCBICelera
Cytogenetic Map22q12.2ENTREZGENE
HuRef2213,126,973 - 13,130,017 (+)NCBIHuRef
CHM1_12230,122,543 - 30,125,587 (+)NCBICHM1_1
T2T-CHM13v2.02230,230,748 - 30,233,792 (+)NCBIT2T-CHM13v2.0
Uqcr10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,651,968 - 4,654,344 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,651,973 - 4,654,342 (-)EnsemblGRCm39 Ensembl
GRCm38114,701,968 - 4,704,344 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,701,973 - 4,704,342 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,601,971 - 4,604,347 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,601,976 - 4,604,331 (-)NCBIMGSCv36mm8
Celera115,200,861 - 5,203,237 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.96NCBI
LOC102011733
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554554,013,134 - 4,018,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554554,013,197 - 4,015,448 (+)NCBIChiLan1.0ChiLan1.0
LOC100968432
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,739,065 - 39,741,623 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12242,440,058 - 42,442,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,810,858 - 10,813,466 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12228,615,583 - 28,618,426 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2228,615,583 - 28,618,426 (+)Ensemblpanpan1.1panPan2
UQCR10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,953,336 - 22,955,569 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,953,331 - 22,955,569 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,824,297 - 22,826,530 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02623,326,845 - 23,329,078 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12623,037,052 - 23,039,286 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02623,299,598 - 23,301,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,359,368 - 23,361,602 (+)NCBIUU_Cfam_GSD_1.0
LOC101968471
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,181,977 - 112,184,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366573,685,962 - 3,690,273 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366573,686,019 - 3,688,730 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCR10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,783,325 - 46,786,140 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11446,783,340 - 46,786,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,817,593 - 49,820,393 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UQCR10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,644,211 - 12,647,094 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,644,235 - 12,647,096 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045113,502,096 - 113,505,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101708617
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247476,080,740 - 6,082,926 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247476,080,725 - 6,083,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Uqcr10
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:45
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000012614
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat

Markers in Region
BI277150  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21578,452,022 - 78,452,175 (+)MAPPERmRatBN7.2
mRatBN7.21479,566,175 - 79,566,329 (+)MAPPERmRatBN7.2
Rnor_6.01484,935,505 - 84,935,658NCBIRnor6.0
Rnor_6.01586,123,093 - 86,123,245NCBIRnor6.0
Rnor_5.01589,888,395 - 89,888,547UniSTSRnor5.0
RGSC_v3.41585,591,962 - 85,592,114UniSTSRGSC3.4
Celera1577,646,046 - 77,646,198UniSTS
Celera1478,471,605 - 78,471,758UniSTS
Cytogenetic Map14q21UniSTS
BI277160  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21479,566,219 - 79,566,392 (+)MAPPERmRatBN7.2
Rnor_6.01484,935,545 - 84,935,720NCBIRnor6.0
Celera1478,471,646 - 78,471,821UniSTS
RH 3.4 Map14512.37UniSTS
Cytogenetic Map14q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 1
Medium 3 42 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000083839   ⟹   ENSRNOP00000074700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1479,566,157 - 79,569,003 (-)Ensembl
Rnor_6.0 Ensembl1484,935,486 - 84,937,725 (-)Ensembl
RefSeq Acc Id: NM_001170465   ⟹   NP_001163936
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,789,657 - 83,791,914 (-)NCBI
mRatBN7.21479,566,151 - 79,568,408 (-)NCBI
Rnor_6.01484,935,480 - 84,937,741 (-)NCBI
Rnor_5.01485,614,330 - 85,614,509 (-)NCBI
RGSC_v3.41485,353,763 - 85,353,942 (-)RGD
Celera1478,471,580 - 78,473,837 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001163936 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66935 (Get FASTA)   NCBI Sequence Viewer  
  EDM00236 (Get FASTA)   NCBI Sequence Viewer  
  EDM00238 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074700.2
Reference Protein Sequences
RefSeq Acc Id: NP_001163936   ⟸   NM_001170465
- UniProtKB: B2RYX1 (UniProtKB/TrEMBL),   A0A0G2K8Q8 (UniProtKB/TrEMBL),   A0A9K3Y7E2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074700   ⟸   ENSRNOT00000083839

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K8Q8-F1-model_v2 AlphaFold A0A0G2K8Q8 1-62 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699447
Promoter ID:EPDNEW_R9971
Type:multiple initiation site
Name:Uqcr10_1
Description:ubiquinol-cytochrome c reductase, complex III subunit X
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01484,937,730 - 84,937,790EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595126 AgrOrtholog
BioCyc Gene G2FUF-15171 BioCyc
Ensembl Genes ENSRNOG00000059061 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083839.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.260 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6922239 IMAGE-MGC_LOAD
InterPro QCR9_sf UniProtKB/TrEMBL
  Ubiquinol_cyt_c_Rdtase_QCR9 UniProtKB/TrEMBL
KEGG Report rno:685322 UniProtKB/TrEMBL
MGC_CLONE MGC:188932 IMAGE-MGC_LOAD
NCBI Gene 685322 ENTREZGENE
PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT 9 UniProtKB/TrEMBL
  UCR_UQCRX_QCR9 UniProtKB/TrEMBL
Pfam UCR_UQCRX_QCR9 UniProtKB/TrEMBL
PhenoGen Uqcr10 PhenoGen
RatGTEx ENSRNOG00000059061 RatGTEx
Superfamily-SCOP Ubiquinol_cytC_Reductase_QCR9 UniProtKB/TrEMBL
UniProt A0A0G2K8Q8 ENTREZGENE
  A0A9K3Y7E2 ENTREZGENE, UniProtKB/TrEMBL
  B2RYX1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A0G2K8Q8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-10-17 Uqcr10  ubiquinol-cytochrome c reductase, complex III subunit X  LOC685322  similar to ubiquinol-cytochrome c reductase complex 7.2kDa protein isoform b  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685322  similar to ubiquinol-cytochrome c reductase complex 7.2kDa protein isoform b  LOC683838  similar to ubiquinol-cytochrome c reductase complex 7.2kDa protein isoform a  Data merged from RGD:1597841 1643240 APPROVED
2006-11-20 LOC685322  similar to ubiquinol-cytochrome c reductase complex 7.2kDa protein isoform b      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC683838  similar to ubiquinol-cytochrome c reductase complex 7.2kDa protein isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL