Ankrd13c (ankyrin repeat domain 13C) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ankrd13c (ankyrin repeat domain 13C) Rattus norvegicus
Analyze
Symbol: Ankrd13c
Name: ankyrin repeat domain 13C
RGD ID: 1595074
Description: Predicted to enable protein carrier chaperone and signaling receptor binding activity. Predicted to be involved in cellular response to prostaglandin D stimulus; protein targeting to membrane; and regulation of anoikis. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm. Orthologous to human ANKRD13C (ankyrin repeat domain 13C); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat domain-containing protein 13C; LOC685374; similar to ankyrin repeat domain 13c
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Ankrd13c-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82249,679,752 - 249,729,272 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2249,681,872 - 249,729,272 (+)EnsemblGRCr8
mRatBN7.22247,023,040 - 247,070,433 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4162,513,287 - 162,515,951 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl2247,022,286 - 247,070,433 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2254,755,537 - 254,802,824 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02252,649,037 - 252,696,325 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02247,617,750 - 247,665,008 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02264,785,379 - 264,833,283 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2264,786,242 - 264,833,283 (+)Ensemblrn6Rnor6.0
Rnor_5.02283,425,372 - 283,473,209 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42256,103,420 - 256,150,461 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2238,823,794 - 238,870,783 (+)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20959461  


Genomics

Comparative Map Data
Ankrd13c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82249,679,752 - 249,729,272 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2249,681,872 - 249,729,272 (+)EnsemblGRCr8
mRatBN7.22247,023,040 - 247,070,433 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4162,513,287 - 162,515,951 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl2247,022,286 - 247,070,433 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2254,755,537 - 254,802,824 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02252,649,037 - 252,696,325 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02247,617,750 - 247,665,008 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02264,785,379 - 264,833,283 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2264,786,242 - 264,833,283 (+)Ensemblrn6Rnor6.0
Rnor_5.02283,425,372 - 283,473,209 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42256,103,420 - 256,150,461 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2238,823,794 - 238,870,783 (+)NCBICelera
Cytogenetic Map2q45NCBI
ANKRD13C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38170,258,999 - 70,354,722 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl170,258,999 - 70,354,734 (-)Ensemblhg38GRCh38
GRCh37170,724,682 - 70,820,405 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36170,500,129 - 70,592,993 (-)NCBIBuild 36Build 36hg18NCBI36
Celera169,014,622 - 69,110,347 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef168,835,825 - 68,931,348 (-)NCBIHuRef
CHM1_1170,840,084 - 70,935,778 (-)NCBICHM1_1
T2T-CHM13v2.0170,137,523 - 70,233,231 (-)NCBIT2T-CHM13v2.0
Ankrd13c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393157,650,886 - 157,713,671 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3157,652,876 - 157,713,671 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383157,945,420 - 158,008,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3157,947,239 - 158,008,034 (+)Ensemblmm10GRCm38
MGSCv373157,610,430 - 157,669,801 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363157,882,759 - 157,942,130 (+)NCBIMGSCv36mm8
Celera3164,414,815 - 164,474,199 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map381.59NCBI
Ankrd13c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542321,616,983 - 21,664,414 (+)Ensembl
ChiLan1.0NW_00495542321,599,563 - 21,666,343 (+)NCBIChiLan1.0ChiLan1.0
ANKRD13C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21156,518,920 - 156,613,300 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11155,678,153 - 155,772,412 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0169,495,946 - 69,590,069 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1171,480,429 - 71,573,705 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl171,480,429 - 71,573,705 (-)EnsemblpanPan2panpan1.1
ANKRD13C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1675,409,427 - 75,472,291 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl675,420,989 - 75,470,647 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha678,000,805 - 78,085,629 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0675,979,647 - 76,064,782 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl675,979,647 - 76,064,780 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1675,532,787 - 75,617,625 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0675,428,188 - 75,512,937 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0675,929,077 - 76,014,262 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ankrd13c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505882,702,906 - 82,784,357 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365911,709,998 - 1,786,647 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365911,710,352 - 1,786,647 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD13C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6142,516,426 - 142,616,328 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16142,516,190 - 142,615,899 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26132,080,198 - 132,187,044 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD13C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12062,791,209 - 62,878,689 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2062,791,171 - 62,879,492 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603354,743,298 - 54,832,055 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd13c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474225,684,395 - 25,757,094 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474225,684,174 - 25,757,955 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ankrd13c
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v133,582,929 - 3,629,847 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:310
Count of miRNA genes:156
Interacting mature miRNAs:216
Transcripts:ENSRNOT00000015170
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat

Markers in Region
AI505652  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22247,068,761 - 247,068,907 (+)MAPPERmRatBN7.2
mRatBN7.25127,378,841 - 127,378,987 (+)MAPPERmRatBN7.2
Rnor_6.05132,662,594 - 132,662,739NCBIRnor6.0
Rnor_6.02264,831,612 - 264,831,757NCBIRnor6.0
Rnor_5.05136,461,386 - 136,461,531UniSTSRnor5.0
Rnor_5.02283,471,538 - 283,471,683UniSTSRnor5.0
RGSC_v3.42256,148,790 - 256,148,935UniSTSRGSC3.4
RGSC_v3.45134,208,346 - 134,208,491UniSTSRGSC3.4
Celera5126,059,761 - 126,059,906UniSTS
Celera2238,869,113 - 238,869,258UniSTS
Cytogenetic Map2q45UniSTS
Cytogenetic Map5q35UniSTS
RH134606  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q45UniSTS
RH138920  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25127,376,448 - 127,376,666 (+)MAPPERmRatBN7.2
mRatBN7.22247,023,160 - 247,023,378 (+)MAPPERmRatBN7.2
Rnor_6.02264,786,015 - 264,786,232NCBIRnor6.0
Rnor_6.05132,660,201 - 132,660,418NCBIRnor6.0
Rnor_5.05136,458,993 - 136,459,210UniSTSRnor5.0
Rnor_5.02283,425,940 - 283,426,157UniSTSRnor5.0
RGSC_v3.42256,103,193 - 256,103,410UniSTSRGSC3.4
RGSC_v3.45134,205,953 - 134,206,170UniSTSRGSC3.4
Celera5126,057,368 - 126,057,585UniSTS
Celera2238,823,567 - 238,823,784UniSTS
Cytogenetic Map2q45UniSTS
Cytogenetic Map5q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000015170   ⟹   ENSRNOP00000015170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2249,681,872 - 249,729,262 (+)Ensembl
mRatBN7.2 Ensembl2247,022,286 - 247,070,433 (+)Ensembl
Rnor_6.0 Ensembl2264,786,242 - 264,833,283 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000122176   ⟹   ENSRNOP00000110797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2249,681,979 - 249,729,263 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129369   ⟹   ENSRNOP00000109782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2249,682,229 - 249,729,263 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000141474   ⟹   ENSRNOP00000107820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2249,682,010 - 249,729,272 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000170010   ⟹   ENSRNOP00000101287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2249,682,479 - 249,729,272 (+)Ensembl
RefSeq Acc Id: NM_001191570   ⟹   NP_001178499
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82249,681,996 - 249,729,272 (+)NCBI
mRatBN7.22247,023,154 - 247,070,433 (+)NCBI
Rnor_6.02264,786,242 - 264,833,283 (+)NCBI
Rnor_5.02283,425,372 - 283,473,209 (+)NCBI
Celera2238,823,794 - 238,870,783 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063282546   ⟹   XP_063138616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82249,679,752 - 249,729,265 (+)NCBI
RefSeq Acc Id: XM_063282547   ⟹   XP_063138617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82249,679,752 - 249,715,885 (+)NCBI
RefSeq Acc Id: XM_063282548   ⟹   XP_063138618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82249,679,752 - 249,711,693 (+)NCBI
RefSeq Acc Id: XM_063282549   ⟹   XP_063138619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82249,679,752 - 249,711,693 (+)NCBI
RefSeq Acc Id: NP_001178499   ⟸   NM_001191570
- UniProtKB: D3ZMJ4 (UniProtKB/TrEMBL),   A0A8I5ZQR9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015170   ⟸   ENSRNOT00000015170
RefSeq Acc Id: XP_063138616   ⟸   XM_063282546
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138617   ⟸   XM_063282547
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AGV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138618   ⟸   XM_063282548
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063138619   ⟸   XM_063282549
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000107820   ⟸   ENSRNOT00000141474
Ensembl Acc Id: ENSRNOP00000110797   ⟸   ENSRNOT00000122176
Ensembl Acc Id: ENSRNOP00000109782   ⟸   ENSRNOT00000129369
Ensembl Acc Id: ENSRNOP00000101287   ⟸   ENSRNOT00000170010
Protein Domains
Ankyrin repeat

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZMJ4-F1-model_v2 AlphaFold D3ZMJ4 1-555 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691842
Promoter ID:EPDNEW_R2366
Type:multiple initiation site
Name:Ankrd13c_1
Description:ankyrin repeat domain 13C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02264,786,249 - 264,786,309EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595074 AgrOrtholog
BioCyc Gene G2FUF-50707 BioCyc
Ensembl Genes ENSRNOG00000011340 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000061420 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015170 ENTREZGENE
  ENSRNOT00000015170.6 UniProtKB/TrEMBL
  ENSRNOT00000081340.3 UniProtKB/TrEMBL
  ENSRNOT00000122176.1 UniProtKB/TrEMBL
  ENSRNOT00000129369 ENTREZGENE
  ENSRNOT00000129369.1 UniProtKB/TrEMBL
  ENSRNOT00000141474.1 UniProtKB/TrEMBL
  ENSRNOT00000170010.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD13_C UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  DUF3424 UniProtKB/TrEMBL
NCBI Gene 685374 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13C UniProtKB/TrEMBL
  PTHR12447 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  DUF3424 UniProtKB/TrEMBL
PhenoGen Ankrd13c PhenoGen
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011340 RatGTEx
  ENSRNOG00000061420 RatGTEx
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
UniProt A0A8I5ZQR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGV3 ENTREZGENE
  A0ABK0LA79_RAT UniProtKB/TrEMBL
  A0ABK0LIR3_RAT UniProtKB/TrEMBL
  A0ABK0LUH7_RAT UniProtKB/TrEMBL
  A0ABK0LXF1_RAT UniProtKB/TrEMBL
  D3ZMJ4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Ankrd13c  ankyrin repeat domain 13C  LOC685374  similar to ankyrin repeat domain 13c  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685374  similar to ankyrin repeat domain 13c  LOC687855  similar to ankyrin repeat domain 13c  Data merged from RGD:1596248 1643240 APPROVED
2006-11-20 LOC685374  similar to ankyrin repeat domain 13c      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC687855  similar to ankyrin repeat domain 13c      Symbol and Name status set to provisional 70820 PROVISIONAL