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Gene: Ube2r2 (ubiquitin-conjugating enzyme E2R 2) Rattus norvegicus

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Symbol:

Ube2r2

Name:

ubiquitin-conjugating enzyme E2R 2

RGD ID:

1594826

Description:

Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein K48-linked ubiquitination; protein monoubiquitination; and ubiquitin-dependent protein catabolic process. Orthologous to human UBE2R2 (ubiquitin conjugating enzyme E2 R2); INTERACTS WITH acetamide; bisphenol A; gentamycin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC689226; LOC689226; similar to ubiquitin-conjugating enzyme E2R 2; ubiquitin-conjugating enzyme E2 R2; uncharacterized protein LOC689226

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UBE2R2 (ubiquitin conjugating enzyme E2 R2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Ube2r2 (ubiquitin-conjugating enzyme E2R 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UBE2R2 (ubiquitin conjugating enzyme E2 R2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UBE2R2 (ubiquitin conjugating enzyme E2 R2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ube2r2 (ubiquitin conjugating enzyme E2 R2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UBE2R2 (ubiquitin conjugating enzyme E2 R2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UBE2R2 (ubiquitin conjugating enzyme E2 R2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ube2r2 (ubiquitin conjugating enzyme E2 R2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ube2r2 (ubiquitin conjugating enzyme E2 R2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CDC34 (cell division cycle 34, ubiquitin conjugating enzyme)	HGNC	OrthoDB
Homo sapiens (human):	LZTS2 (leucine zipper tumor suppressor 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	UBE2R2 (ubiquitin conjugating enzyme E2 R2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	UBE2R2 (ubiquitin conjugating enzyme E2 R2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OMA\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Ube2r2 (ubiquitin-conjugating enzyme E2R 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ube2r2 (ubiquitin-conjugating enzyme E2R 2)	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	ube2r2 (ubiquitin-conjugating enzyme E2R 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	ube2r2 (ubiquitin-conjugating enzyme E2R 2)	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	CDC34	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CDC34	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG7656	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7656	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ubc-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ube2r2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ube2r2	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	61,082,552 - 61,141,099 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	61,082,552 - 61,141,452 (+)	Ensembl				GRCr8
mRatBN7.2	5	56,286,604 - 56,345,160 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	56,286,725 - 56,345,513 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	58,262,065 - 58,320,362 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	60,081,068 - 60,139,368 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	60,065,409 - 60,123,962 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	57,472,315 - 57,530,973 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	57,472,315 - 57,530,987 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	62,002,658 - 62,061,609 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	58,547,551 - 58,607,325 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	54,883,872 - 54,942,820 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-bromohexadecanoic acid (ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

clozapine (ISO)

Dibutyl phosphate (ISO)

dieldrin (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenofibrate (ISO)

ferroheme b (ISO)

formaldehyde (ISO)

gentamycin (EXP)

glycidyl methacrylate (ISO)

GSK-J4 (ISO)

haloperidol (ISO)

heme b (ISO)

ivermectin (ISO)

lead diacetate (ISO)

lead(0) (ISO)

paracetamol (EXP)

phlorizin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein K48-linked ubiquitination (ISO)

protein monoubiquitination (ISO)

protein polyubiquitination (IBA)

ubiquitin-dependent protein catabolic process (IBA)

Molecular Function

ATP binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin conjugating enzyme activity (IBA,ISO)

ubiquitin-protein transferase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:20061386

Genomics

Comparative Map Data

Ube2r2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	61,082,552 - 61,141,099 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	61,082,552 - 61,141,452 (+)	Ensembl				GRCr8
mRatBN7.2	5	56,286,604 - 56,345,160 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	56,286,725 - 56,345,513 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	58,262,065 - 58,320,362 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	60,081,068 - 60,139,368 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	60,065,409 - 60,123,962 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	57,472,315 - 57,530,973 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	57,472,315 - 57,530,987 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	62,002,658 - 62,061,609 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	58,547,551 - 58,607,325 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	54,883,872 - 54,942,820 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

UBE2R2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	33,815,168 - 33,920,399 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	33,817,160 - 33,920,399 (+)	Ensembl			hg38	GRCh38
GRCh37	9	33,817,158 - 33,920,397 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	33,807,182 - 33,910,401 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	33,807,181 - 33,910,399	NCBI
Celera	9	33,749,030 - 33,852,202 (+)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	33,774,994 - 33,878,163 (+)	NCBI		HuRef
CHM1_1	9	33,816,986 - 33,920,164 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	33,835,748 - 33,938,999 (+)	NCBI		T2T-CHM13v2.0

Ube2r2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	41,136,021 - 41,193,370 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	41,135,743 - 41,193,380 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	41,136,021 - 41,193,370 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	41,135,743 - 41,193,380 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	41,083,054 - 41,140,403 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	41,324,692 - 41,382,041 (+)	NCBI		MGSCv36	mm8
Celera	4	40,835,221 - 40,854,676 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	21.02	NCBI

UBE2R2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	90,684,547 - 90,785,075 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	90,688,078 - 90,791,016 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	33,655,690 - 33,758,587 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	34,466,886 - 34,566,532 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

UBE2R2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	50,554,173 - 50,678,284 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	50,554,349 - 50,675,514 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	49,184,265 - 49,307,712 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	51,495,035 - 51,618,618 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	51,495,410 - 51,616,235 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	50,158,753 - 50,282,211 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	50,026,060 - 50,149,727 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	50,791,335 - 50,914,879 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ube2r2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	165,457,928 - 165,558,985 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	2,005,590 - 2,103,389 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	2,005,508 - 2,103,878 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBE2R2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	32,894,432 - 33,014,473 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	32,894,424 - 33,014,473 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	37,086,230 - 37,092,380 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBE2R2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	46,668,502 - 46,781,144 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	46,666,001 - 46,781,572 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	43,555,458 - 43,668,344 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ube2r2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	38,236,245 - 38,334,137 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624736	38,235,679 - 38,334,137 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ube2r2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	117,024,554 - 117,038,949 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ube2r2
321 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	59
Count of miRNA genes:	43
Interacting mature miRNAs:	55
Transcripts:	ENSRNOT00000015575
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2303577	Gluco47	Glucose level QTL 47	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	16520019	61520019	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat

Markers in Region

D7Rat87

Rat Assembly	Chr	Position (strand)	Source
Celera	5	54,929,697 - 54,929,898	UniSTS
RGSC_v3.1	7	18,635,042 - 18,635,250	RGD
FHH x ACI Map	7	3.3099	RGD
FHH x ACI Map	7	3.3099	UniSTS
Cytogenetic Map	5	q22	UniSTS

D5Mco13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	61,136,115 - 61,136,390 (+)	Marker Load Pipeline
mRatBN7.2	5	56,340,174 - 56,340,467 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	56,340,174 - 56,340,449 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	57,525,910 - 57,526,184	NCBI	Rnor6.0
Rnor_6.0	5	57,525,910 - 57,526,265	NCBI	Rnor6.0
Rnor_5.0	5	62,056,546 - 62,056,901	UniSTS	Rnor5.0
Rnor_5.0	5	62,056,546 - 62,056,820	UniSTS	Rnor5.0
RGSC_v3.4	5	58,602,342 - 58,602,616	UniSTS	RGSC3.4
Celera	5	54,937,837 - 54,938,111	UniSTS
RGSC_v3.1	5	58,602,520 - 58,602,795	RGD
Cytogenetic Map	5	q22	UniSTS

D5Got227

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	56,291,676 - 56,291,825 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	57,477,388 - 57,477,536	NCBI	Rnor6.0
Rnor_5.0	5	62,007,731 - 62,007,879	UniSTS	Rnor5.0
RGSC_v3.4	5	58,552,624 - 58,552,772	UniSTS	RGSC3.4
Celera	5	54,888,945 - 54,889,093	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH144439

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	56,294,077 - 56,294,179 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	57,479,789 - 57,479,890	NCBI	Rnor6.0
Rnor_5.0	5	62,010,132 - 62,010,233	UniSTS	Rnor5.0
RGSC_v3.4	5	58,555,025 - 58,555,126	UniSTS	RGSC3.4
Celera	5	54,891,346 - 54,891,447	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC167074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015575 ⟹ ENSRNOP00000015575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	61,082,685 - 61,141,452 (+)	Ensembl
mRatBN7.2 Ensembl	5	56,286,725 - 56,345,513 (+)	Ensembl
Rnor_6.0 Ensembl	5	57,472,315 - 57,530,987 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000170788 ⟹ ENSRNOP00000112222

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	61,082,552 - 61,140,689 (+)	Ensembl

RefSeq Acc Id:

NM_001127573 ⟹ NP_001121045

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,082,552 - 61,141,099 (+)	NCBI
mRatBN7.2	5	56,286,604 - 56,345,160 (+)	NCBI
Rnor_6.0	5	57,472,315 - 57,530,973 (+)	NCBI
Rnor_5.0	5	62,002,658 - 62,061,609 (+)	NCBI
RGSC_v3.4	5	58,547,551 - 58,607,325 (+)	RGD
Celera	5	54,883,872 - 54,942,820 (+)	RGD

Sequence:

show sequence

TGAGTGAGGAGGACCCCGGGCGGGCCCGCGGGCCGTCTGGGGCCTGGTCCGGCCCCGCCAGGCG
TGTGAGGACAGGGGCCCGGCCCGGCCCGAGGGCGAGCGGAGGGGAGGGGCCTGGTCCGGCCCGG
CCGGTGCGCGAGGACTGGGGCCGCGGCCCCGCACGGCCGCCGCCGCGATGGCCCAGCAGCAGAT
GACCAGCTCGCAAAAAGCCCTGATGCTTGAGCTGAAATCCCTGCAGGAGGAACCGGTGGAGGGC
TTCCGGATCACCCTGGTGGATGAGTCCGACCTCTACAACTGGGAGGTGGCCATCTTCGGACCCC
CTAACACCCTCTACGAAGGCGGCTACTTCAAGGCACATATTAAATTTCCTATTGACTACCCATA
TTCACCACCTACCTTCAGATTCTTGACCAAAATGTGGCACCCCAACATCTATGAGAATGGAGAT
GTATGCATTTCAATCCTTCATCCGCCTGTAGATGACCCACAGAGTGGAGAGCTGCCCTCTGAAA
GGTGGAATCCTACTCAGAATGTGAGGACTATCCTGCTGAGTGTAATCTCCCTGCTTAATGAGCC
CAACACCTTTTCTCCAGCCAATGTGGATGCTTCAGTCATGTTCAGGAAATGGAGGGACAGCAAA
GGAAAGGACAAGGAGTACGCTGAGATCATTAGGAAACAGGTCTCAGCCACGAAAGCTGAAGCAG
AAAAGGATGGAGTGAAGGTCCCCACAACCCTGGCAGAATACTGCATCAAAACTAAAGTGCCTTC
CAATGACAACAGCTCAGATTTGCTTTATGACGACCTGTATGACGACGACATTGATGACGAAGAC
GAGGAGGAAGAAGATGCCGACTGTTATGATGATGATGACTCTGGAAATGAGGAGTCGTGACATG
TTCCTTCAGTTCCCTGTACTGCCCTGACGTCTCAGGCCAAAGGGAGGGGAGCAAGTGGGGATCT
ACAGTGGCCACTCAGCAAAAACTTACTCATGGGGTGGGAAGCAAACAGCCCCTGCTGACTCACT
CCCCTTGCAGCTCTCAGTTTGCTCCTTTTTATGGACCTTACTGGAGAGGAAGTTCCCTCCACAG
AATGTCTGAATCCTTGCATTCTTCCCTCCATCACTGTATTGATTCTTTTTTAAAAACAGCCACC
ACCCCTCAAACTCCCCCTCACCCCATCTCTGCAGAGTGTTCACAGCAAAACACCTTTGTCTGTT
TCTAGATTCTTGAAGAATTAGTCTGTTTAAGACATTGTGTTTAAAGCTGGGAGCCCACTGGGAG
TCCACAAGTGCTGCATATATTGGGTAGCAAAAGAAAATGGGAAAAAAAAAAAAAAAAAAAAAAA
AAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001121045	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67074	(Get FASTA)	NCBI Sequence Viewer
	EDL98659	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015575
	ENSRNOP00000015575.8
	ENSRNOP00000112222.1

RefSeq Acc Id:

NP_001121045 ⟸ NM_001127573

- UniProtKB:

B2RZ96 (UniProtKB/TrEMBL), E9PSL9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKF
PIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI
SLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCI
KTKVPSNDNSSDLLYDDLYDDDIDDEDEEEEDADCYDDDDSGNEES

hide sequence

Ensembl Acc Id:

ENSRNOP00000015575 ⟸ ENSRNOT00000015575

Ensembl Acc Id:

ENSRNOP00000112222 ⟸ ENSRNOT00000170788

Protein Domains

UBC core

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RZ96-F1-model_v2	AlphaFold	B2RZ96	1-238	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693644

Promoter ID:

EPDNEW_R4169

Type:

initiation region

Name:

Ube2r2_2

Description:

ubiquitin-conjugating enzyme E2R 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4170

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	57,472,314 - 57,472,374	EPDNEW

RGD ID:

13693645

Promoter ID:

EPDNEW_R4170

Type:

initiation region

Name:

Ube2r2_1

Description:

ubiquitin-conjugating enzyme E2R 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4169

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	57,472,448 - 57,472,508	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1594826	AgrOrtholog
BioCyc Gene	G2FUF-41577	BioCyc
Ensembl Genes	ENSRNOG00000010727	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015575	ENTREZGENE
	ENSRNOT00000015575.9	UniProtKB/TrEMBL
	ENSRNOT00000170788.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.110.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9101454	IMAGE-MGC_LOAD
InterPro	Ub_conjugating_enzyme	UniProtKB/TrEMBL
	UBQ-conjugat_E2	UniProtKB/TrEMBL
	UBQ-conjugating_AS	UniProtKB/TrEMBL
	UBQ-conjugating_enzyme/RWD	UniProtKB/TrEMBL
KEGG Report	rno:689226	UniProtKB/TrEMBL
MGC_CLONE	MGC:189415	IMAGE-MGC_LOAD
NCBI Gene	689226	ENTREZGENE
PANTHER	UBIQUITIN-CONJUGATING ENZYME E2	UniProtKB/TrEMBL
Pfam	UQ_con	UniProtKB/TrEMBL
PhenoGen	Ube2r2	PhenoGen
PROSITE	UBIQUITIN_CONJUGAT_1	UniProtKB/TrEMBL
	UBIQUITIN_CONJUGAT_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010727	RatGTEx
SMART	UBCc	UniProtKB/TrEMBL
Superfamily-SCOP	UBQ-conjugat/RWD-like	UniProtKB/TrEMBL
UniProt	A0A8J8Y4N8_RAT	UniProtKB/TrEMBL
	A0ABK0M641_RAT	UniProtKB/TrEMBL
	B2RZ96	ENTREZGENE, UniProtKB/TrEMBL
	E9PSL9	ENTREZGENE
UniProt Secondary	E9PSL9	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-29	Ube2r2	ubiquitin-conjugating enzyme E2R 2	LOC689226	similar to ubiquitin-conjugating enzyme E2R 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC689226	similar to ubiquitin-conjugating enzyme E2R 2	LOC362852	similar to ubiquitin conjugating enzyme E2	Data merged from RGD:1597135	1643240	APPROVED
2006-11-20	LOC689226	similar to ubiquitin-conjugating enzyme E2R 2			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC362852	similar to ubiquitin conjugating enzyme E2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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