Scai (suppressor of cancer cell invasion) - Rat Genome Database

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Gene: Scai (suppressor of cancer cell invasion) Rattus norvegicus
Analyze
Symbol: Scai
Name: suppressor of cancer cell invasion
RGD ID: 1594720
Description: Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of Rho protein signal transduction and negative regulation of cell migration. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SCAI (suppressor of cancer cell invasion); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC690538; rCG37693-like; similar to Protein C9orf126 homolog; suppressor of cancer cell invasion variant 1; suppressor of cancer cell invasion variant 2; suppressor of cancer cell invasion variant 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,222,983 - 43,335,056 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl343,222,983 - 43,335,025 (-)EnsemblGRCr8
mRatBN7.2322,813,283 - 22,925,337 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,819,574 - 22,925,363 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx326,281,839 - 26,393,797 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,866,820 - 34,978,786 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,679,424 - 32,791,572 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,357,586 - 23,474,218 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,362,707 - 23,474,170 (-)Ensemblrn6Rnor6.0
Rnor_5.0328,582,235 - 28,696,058 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4318,856,362 - 18,960,182 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera321,249,476 - 21,357,620 (-)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
nuclear membrane  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19350017   PMID:23178076   PMID:28131823   PMID:32736682  


Genomics

Comparative Map Data
Scai
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,222,983 - 43,335,056 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl343,222,983 - 43,335,025 (-)EnsemblGRCr8
mRatBN7.2322,813,283 - 22,925,337 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,819,574 - 22,925,363 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx326,281,839 - 26,393,797 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,866,820 - 34,978,786 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,679,424 - 32,791,572 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,357,586 - 23,474,218 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,362,707 - 23,474,170 (-)Ensemblrn6Rnor6.0
Rnor_5.0328,582,235 - 28,696,058 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4318,856,362 - 18,960,182 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera321,249,476 - 21,357,620 (-)NCBICelera
Cytogenetic Map3q12NCBI
SCAI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,942,608 - 125,143,528 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,942,608 - 125,143,528 (-)Ensemblhg38GRCh38
GRCh379127,704,887 - 127,905,807 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,754,888 - 126,945,596 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349124,794,620 - 124,985,329NCBI
Celera998,352,855 - 98,553,772 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,317,193 - 97,517,971 (-)NCBIHuRef
CHM1_19127,853,646 - 128,054,558 (-)NCBICHM1_1
T2T-CHM13v2.09137,140,969 - 137,341,870 (-)NCBIT2T-CHM13v2.0
Scai
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,956,226 - 39,080,770 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,956,226 - 39,080,746 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38239,066,214 - 39,190,758 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl239,066,214 - 39,190,734 (-)Ensemblmm10GRCm38
MGSCv37238,921,734 - 39,046,250 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36238,888,223 - 39,012,739 (-)NCBIMGSCv36mm8
Celera240,791,951 - 40,916,923 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Scai
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,137,749 - 3,296,454 (+)Ensembl
ChiLan1.0NW_0049554193,137,745 - 3,296,460 (+)NCBIChiLan1.0ChiLan1.0
SCAI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,214,418 - 14,415,795 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,216,784 - 14,418,139 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0996,063,149 - 96,264,502 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,579,449 - 124,780,072 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,589,616 - 124,780,072 (-)EnsemblpanPan2panpan1.1
SCAI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1957,924,995 - 58,090,837 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl957,924,530 - 58,082,053 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha957,124,828 - 57,289,680 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0958,845,385 - 59,011,277 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl958,845,415 - 59,003,189 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,604,632 - 57,770,289 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0957,921,148 - 58,086,095 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,011,467 - 58,176,812 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Scai
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,376,918 - 193,508,070 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,146,123 - 13,276,617 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,145,445 - 13,276,539 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCAI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,714,211 - 265,867,101 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11265,710,644 - 265,867,099 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,541,771 - 299,618,963 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCAI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,010,370 - 13,194,231 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,010,479 - 13,192,912 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660792,908,330 - 3,093,627 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scai
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,076,998 - 10,246,535 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476010,076,870 - 10,248,480 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Scai
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1516,818,578 - 16,914,669 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Scai
814 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:83
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000039410, ENSRNOT00000074848
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)33777225855937853Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)33779691953640235Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)33779691947904329Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
D3Rat276  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8343,267,790 - 43,267,934 (+)Marker Load Pipeline
mRatBN7.2322,858,096 - 22,858,240 (+)MAPPERmRatBN7.2
Rnor_6.0323,398,877 - 23,399,020NCBIRnor6.0
Rnor_5.0328,620,703 - 28,620,846UniSTSRnor5.0
RGSC_v3.4318,892,648 - 18,892,791UniSTSRGSC3.4
RGSC_v3.4318,892,647 - 18,892,790RGDRGSC3.4
Celera321,290,812 - 21,290,955UniSTS
RGSC_v3.1318,789,019 - 18,789,162RGD
SHRSP x BN Map38.6699UniSTS
SHRSP x BN Map38.6699RGD
Cytogenetic Map3q11UniSTS
MARC_10305-10306:998934185:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2322,846,299 - 22,847,280 (+)MAPPERmRatBN7.2
Rnor_6.0323,387,081 - 23,388,061NCBIRnor6.0
Rnor_5.0328,608,907 - 28,609,887UniSTSRnor5.0
RGSC_v3.4318,880,852 - 18,881,832UniSTSRGSC3.4
Celera321,279,016 - 21,279,996UniSTS
Cytogenetic Map3q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB751604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB751605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB751606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000039410   ⟹   ENSRNOP00000030689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl343,222,983 - 43,335,025 (-)Ensembl
mRatBN7.2 Ensembl322,821,825 - 22,925,363 (-)Ensembl
Rnor_6.0 Ensembl323,362,707 - 23,474,170 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096988   ⟹   ENSRNOP00000083863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl343,222,983 - 43,282,588 (-)Ensembl
mRatBN7.2 Ensembl322,821,825 - 22,872,894 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104956   ⟹   ENSRNOP00000076602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,819,574 - 22,925,292 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106698   ⟹   ENSRNOP00000085924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl343,222,983 - 43,335,025 (-)Ensembl
mRatBN7.2 Ensembl322,821,825 - 22,925,292 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116892   ⟹   ENSRNOP00000090036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,845,695 - 22,925,292 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170022   ⟹   ENSRNOP00000100672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl343,222,983 - 43,335,025 (-)Ensembl
RefSeq Acc Id: NM_001399633   ⟹   NP_001386562
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,222,983 - 43,335,025 (-)NCBI
mRatBN7.2322,813,283 - 22,925,337 (-)NCBI
RefSeq Acc Id: NM_001399634   ⟹   NP_001386563
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,222,983 - 43,335,025 (-)NCBI
mRatBN7.2322,813,283 - 22,925,337 (-)NCBI
RefSeq Acc Id: NM_001399635   ⟹   NP_001386564
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,222,983 - 43,335,025 (-)NCBI
mRatBN7.2322,813,283 - 22,925,337 (-)NCBI
RefSeq Acc Id: XM_063284586   ⟹   XP_063140656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,238,634 - 43,335,055 (-)NCBI
RefSeq Acc Id: XR_010064694
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,236,346 - 43,335,056 (-)NCBI
RefSeq Acc Id: XR_010064695
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,238,634 - 43,335,055 (-)NCBI
RefSeq Acc Id: XR_010064696
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,236,426 - 43,335,055 (-)NCBI
Ensembl Acc Id: ENSRNOP00000030689   ⟸   ENSRNOT00000039410
Ensembl Acc Id: ENSRNOP00000083863   ⟸   ENSRNOT00000096988
Ensembl Acc Id: ENSRNOP00000085924   ⟸   ENSRNOT00000106698
Ensembl Acc Id: ENSRNOP00000090036   ⟸   ENSRNOT00000116892
Ensembl Acc Id: ENSRNOP00000076602   ⟸   ENSRNOT00000104956
RefSeq Acc Id: NP_001386562   ⟸   NM_001399633
- Peptide Label: isoform 1
- UniProtKB: A6JEW3 (UniProtKB/TrEMBL),   A0A7G3W5S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386564   ⟸   NM_001399635
- Peptide Label: isoform 2
- UniProtKB: A0A8I6A099 (UniProtKB/TrEMBL),   A6JEW4 (UniProtKB/TrEMBL),   F1M3P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386563   ⟸   NM_001399634
- Peptide Label: isoform 2
- UniProtKB: A0A8I6A099 (UniProtKB/TrEMBL),   A6JEW4 (UniProtKB/TrEMBL),   F1M3P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140656   ⟸   XM_063284586
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZJ84 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100672   ⟸   ENSRNOT00000170022

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M3P6-F1-model_v2 AlphaFold F1M3P6 1-606 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692063
Promoter ID:EPDNEW_R2583
Type:multiple initiation site
Name:Scai_1
Description:suppressor of cancer cell invasion
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0323,474,181 - 23,474,241EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594720 AgrOrtholog
BioCyc Gene G2FUF-49881 BioCyc
Ensembl Genes ENSRNOG00000025278 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039410 ENTREZGENE
  ENSRNOT00000039410.9 UniProtKB/TrEMBL
  ENSRNOT00000096988.2 UniProtKB/TrEMBL
  ENSRNOT00000106698 ENTREZGENE
  ENSRNOT00000106698.2 UniProtKB/TrEMBL
  ENSRNOT00000170022.1 UniProtKB/TrEMBL
InterPro DUF3550 UniProtKB/TrEMBL
  UCP013022 UniProtKB/TrEMBL
NCBI Gene 690538 ENTREZGENE
PANTHER PROTEIN SCAI UniProtKB/TrEMBL
Pfam DUF3550 UniProtKB/TrEMBL
PhenoGen Scai PhenoGen
PIRSF UCP013022 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025278 RatGTEx
UniProt A0A7G3W5S2 ENTREZGENE, UniProtKB/TrEMBL
  A0A7G3W5S3_RAT UniProtKB/TrEMBL
  A0A7G3W5S4_RAT UniProtKB/TrEMBL
  A0A8I5ZJ84 ENTREZGENE
  A0A8I6A099 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GB80_RAT UniProtKB/TrEMBL
  A0ABK0L7E7_RAT UniProtKB/TrEMBL
  A6JEW3 ENTREZGENE, UniProtKB/TrEMBL
  A6JEW4 ENTREZGENE, UniProtKB/TrEMBL
  F1M3P6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Scai  suppressor of cancer cell invasion  LOC100364814  rCG37693-like  Data merged from RGD:2320251 1643240 APPROVED
2010-05-05 LOC100364814  rCG37693-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-04-23 Scai  suppressor of cancer cell invasion  LOC690538  similar to Protein C9orf126 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC690538  similar to Protein C9orf126 homolog  LOC682319  similar to Protein C9orf126 homolog  Data merged from RGD:1584627 1643240 APPROVED
2006-11-20 LOC690538  similar to Protein C9orf126 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682319  similar to Protein C9orf126 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL