Pla2g4c (phospholipase A2 group IVC) - Rat Genome Database

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Gene: Pla2g4c (phospholipase A2 group IVC) Rattus norvegicus
Analyze
Symbol: Pla2g4c
Name: phospholipase A2 group IVC
RGD ID: 1594658
Description: Predicted to enable several functions, including calcium ion binding activity; calcium-dependent phospholipid binding activity; and phospholipase activity. Predicted to be involved in glycerophospholipid metabolic process and lipid droplet formation. Predicted to be located in several cellular components, including endoplasmic reticulum membrane; lipid droplet; and mitochondrial membrane. Predicted to be active in cytosol; nuclear envelope; and nucleoplasm. Orthologous to human PLA2G4C (phospholipase A2 group IVC); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytosolic phospholipase A2 gamma; LOC292645; LOC691810; phospholipase A2, group IVC; phospholipase A2, group IVC (cytosolic, calcium-independent); phospholipase A2, group IVC-like 1; phospholipase A2, group IVC-like 2; Pla2g4cl1; Pla2g4cl2; similar to phospholipase A2, group IVC (cytosolic, calcium-independent)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,315,017 - 83,411,342 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl183,382,068 - 83,410,037 (+)EnsemblGRCr8
mRatBN7.2174,237,714 - 74,275,757 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl174,236,211 - 74,274,656 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx179,558,949 - 79,655,239 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0188,123,296 - 88,219,600 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0181,314,023 - 81,410,309 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0175,440,035 - 75,481,995 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,428,027 - 75,620,911 (+)Ensemblrn6Rnor6.0
Rnor_5.0176,802,413 - 76,830,858 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4173,813,163 - 73,860,009 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera169,621,128 - 69,663,388 (+)NCBICelera
RGSC_v3.1173,954,625 - 73,970,671 (+)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10085124   PMID:14676306   PMID:15950603   PMID:26013918  


Genomics

Comparative Map Data
Pla2g4c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,315,017 - 83,411,342 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl183,382,068 - 83,410,037 (+)EnsemblGRCr8
mRatBN7.2174,237,714 - 74,275,757 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl174,236,211 - 74,274,656 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx179,558,949 - 79,655,239 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0188,123,296 - 88,219,600 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0181,314,023 - 81,410,309 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0175,440,035 - 75,481,995 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,428,027 - 75,620,911 (+)Ensemblrn6Rnor6.0
Rnor_5.0176,802,413 - 76,830,858 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4173,813,163 - 73,860,009 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera169,621,128 - 69,663,388 (+)NCBICelera
RGSC_v3.1173,954,625 - 73,970,671 (+)NCBI
Cytogenetic Map1q21NCBI
PLA2G4C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,047,846 - 48,110,817 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1948,047,843 - 48,110,850 (-)Ensemblhg38GRCh38
GRCh371948,551,103 - 48,614,074 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,242,917 - 53,305,826 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341953,242,916 - 53,305,826NCBI
Celera1945,416,244 - 45,479,249 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1944,932,777 - 44,995,907 (-)NCBIHuRef
CHM1_11948,553,058 - 48,616,286 (-)NCBICHM1_1
T2T-CHM13v2.01951,041,707 - 51,105,372 (-)NCBIT2T-CHM13v2.0
Pla2g4c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39713,045,432 - 13,094,597 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl713,058,580 - 13,094,597 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38713,311,507 - 13,360,674 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl713,324,655 - 13,360,672 (+)Ensemblmm10GRCm38
MGSCv37713,911,016 - 13,946,017 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36712,229,514 - 12,260,122 (+)NCBIMGSCv36mm8
Celera710,942,345 - 10,977,321 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.84NCBI
Pla2g4c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955609183,699 - 212,428 (+)Ensembl
ChiLan1.0NW_004955609182,706 - 212,102 (+)NCBIChiLan1.0ChiLan1.0
PLA2G4C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22054,149,735 - 54,212,309 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11956,019,669 - 56,082,347 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,990,634 - 45,052,321 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11953,640,592 - 53,702,233 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1953,641,092 - 53,701,862 (-)EnsemblpanPan2panpan1.1
Pla2g4c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934920,583,386 - 20,621,674 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366642,207,164 - 2,235,490 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366642,201,583 - 2,237,796 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLA2G4C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,298,044 - 41,350,558 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl641,297,999 - 41,346,892 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607321,082,008 - 21,137,551 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pla2g4c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248325,730,752 - 5,754,869 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248325,709,007 - 5,757,650 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pla2g4c
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12173,654,632 - 173,689,152 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pla2g4c
747 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:17
Count of miRNA genes:15
Interacting mature miRNAs:17
Transcripts:ENSRNOT00000033633
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 2 12 32 75 82 53 29 53 5 153 54 4 21 29 71 29 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000033633   ⟹   ENSRNOP00000034272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,382,141 - 83,410,037 (+)Ensembl
mRatBN7.2 Ensembl174,237,676 - 74,274,656 (+)Ensembl
Rnor_6.0 Ensembl175,440,034 - 75,481,995 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000058334   ⟹   ENSRNOP00000055136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,382,068 - 83,408,470 (+)Ensembl
mRatBN7.2 Ensembl174,236,211 - 74,274,656 (+)Ensembl
Rnor_6.0 Ensembl175,428,027 - 75,620,911 (+)Ensembl
RefSeq Acc Id: NM_001393690   ⟹   NP_001380619
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,315,017 - 83,411,342 (+)NCBI
mRatBN7.2174,237,714 - 74,275,757 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001380619 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAD06223 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000034272.6
  ENSRNOP00000055136.6
Ensembl Acc Id: ENSRNOP00000034272   ⟸   ENSRNOT00000033633
Ensembl Acc Id: ENSRNOP00000055136   ⟸   ENSRNOT00000058334
RefSeq Acc Id: NP_001380619   ⟸   NM_001393690
- UniProtKB: F1LMQ4 (UniProtKB/TrEMBL),   F1LY61 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LMQ4-F1-model_v2 AlphaFold F1LMQ4 1-604 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594658 AgrOrtholog
BioCyc Gene G2FUF-60672 BioCyc
Ensembl Genes ENSRNOG00000026764 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033633.7 UniProtKB/TrEMBL
  ENSRNOT00000058334.6 UniProtKB/TrEMBL
Gene3D-CATH Cytosolic phospholipase A2 catalytic domain UniProtKB/TrEMBL
InterPro Acyl_Trfase/lysoPlipase UniProtKB/TrEMBL
  Lysophospholipase_cat_dom UniProtKB/TrEMBL
NCBI Gene 691810 ENTREZGENE
PANTHER CYTOSOLIC PHOSPHOLIPASE A2 UniProtKB/TrEMBL
  CYTOSOLIC PHOSPHOLIPASE A2 GAMMA UniProtKB/TrEMBL
Pfam PLA2_B UniProtKB/TrEMBL
PhenoGen Pla2g4c PhenoGen
PROSITE PLA2C UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026764 RatGTEx
SMART PLAc UniProtKB/TrEMBL
Superfamily-SCOP Acyl_Trfase/lysoPlipase UniProtKB/TrEMBL
UniProt F1LMQ4 ENTREZGENE, UniProtKB/TrEMBL
  F1LY61 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-27 Pla2g4c  phospholipase A2 group IVC  Pla2g4cl2  phospholipase A2, group IVC-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-06-27 Pla2g4cl2  phospholipase A2, group IVC-like 2  Pla2g4cl1  phospholipase A2, group IVC-like 1  Name and Symbol changed 629549 APPROVED
2012-01-19 Pla2g4cl1  phospholipase A2, group IVC-like 1  Pla2g4c  phospholipase A2, group IVC (cytosolic, calcium-independent)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-01-20 Pla2g4c  phospholipase A2, group IVC (cytosolic, calcium-independent)  Pla2g4cl1  phospholipase A2, group IVC-like 1  Data merged from RGD:735089 737654 APPROVED
2008-03-17 Pla2g4cl1  phospholipase A2, group IVC-like 1  Pla2g4c  phospholipase A2, group IVC (cytosolic, calcium-independent)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-17 Pla2g4c  phospholipase A2, group IVC (cytosolic, calcium-independent)  LOC691810  similar to phospholipase A2, group IVC (cytosolic, calcium-independent)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC691810  similar to phospholipase A2, group IVC (cytosolic, calcium-independent)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-08 Pla2g4c  phospholipase A2, group IVC (cytosolic, calcium-independent)  LOC292645  phospholipase A2, group IVC  Symbol and Name updated 1299863 APPROVED