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Gene: Pcp4l1 (Purkinje cell protein 4-like 1) Rattus norvegicus

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Symbol:

Pcp4l1

Name:

Purkinje cell protein 4-like 1

RGD ID:

1593809

Description:

Orthologous to human PCP4L1 (Purkinje cell protein 4 like 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC685448; LOC685448; Purkinje cell protein 4-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,121,463 - 86,145,097 (-)	NCBI		GRCr8
mRatBN7.2	13	83,588,992 - 83,612,631 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,588,992 - 83,609,966 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	86,094,718 - 86,118,283 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,492,955 - 87,516,526 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,724,551 - 84,747,967 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,542,377 - 89,565,920 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,542,378 - 89,565,813 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	94,169,877 - 94,192,679 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	87,059,476 - 87,083,085 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	83,220,194 - 83,243,617 (-)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pcp4l1	Rat	autoimmune interstitial lung, joint, and kidney disease		ISO	PCP4L1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autoimmune interstitial lung disease-arthritis syndrome	ClinVar	PMID:28492532
Pcp4l1	Rat	gastrointestinal stromal tumor		ISO	PCP4L1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Pcp4l1	Rat	parathyroid carcinoma		ISO	PCP4L1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pcp4l1	Rat	17beta-estradiol	multiple interactions	ISO	PCP4L1 (Homo sapiens)	6480464	[Estradiol co-treated with TGFB1 protein] results in decreased expression of PCP4L1 mRNA	CTD	PMID:30165855
Pcp4l1	Rat	17beta-estradiol	affects expression	ISO	Pcp4l1 (Mus musculus)	6480464	Estradiol affects the expression of PCP4L1 mRNA	CTD	PMID:39298647
Pcp4l1	Rat	17beta-estradiol	increases expression	EXP		6480464	Estradiol results in increased expression of PCP4L1 mRNA	CTD	PMID:32145629
Pcp4l1	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Pcp4l1 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin binds to AHR protein] which results in increased expression of PCP4L1 mRNA more ...	CTD	PMID:16214954 more ...
Pcp4l1	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of PCP4L1 mRNA	CTD	PMID:33956508
Pcp4l1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of PCP4L1 mRNA	CTD	PMID:19770486 more ...
Pcp4l1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Pcp4l1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of PCP4L1 mRNA	CTD	PMID:20702594 more ...
Pcp4l1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of PCP4L1 mRNA	CTD	PMID:31511937
Pcp4l1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of PCP4L1 mRNA	CTD	PMID:21215274
Pcp4l1	Rat	2,4-dibromophenyl 2,4,5-tribromophenyl ether	affects expression	ISO	Pcp4l1 (Mus musculus)	6480464	2 more ...	CTD	PMID:38648751
Pcp4l1	Rat	2-hydroxypropanoic acid	increases expression	ISO	PCP4L1 (Homo sapiens)	6480464	Lactic Acid results in increased expression of PCP4L1 mRNA	CTD	PMID:30851411
Pcp4l1	Rat	3,3',4,4',5-pentachlorobiphenyl	affects expression	ISO	Pcp4l1 (Mus musculus)	6480464	3 more ...	CTD	PMID:20702594
Pcp4l1	Rat	3,4-methylenedioxymethamphetamine	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of PCP4L1 mRNA	CTD	PMID:26251327
Pcp4l1	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	bisphenol S results in decreased expression of PCP4L1 mRNA	CTD	PMID:30951980
Pcp4l1	Rat	4,4'-sulfonyldiphenol	affects expression	ISO	Pcp4l1 (Mus musculus)	6480464	bisphenol S affects the expression of PCP4L1 mRNA	CTD	PMID:39298647
Pcp4l1	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Fenretinide results in increased expression of PCP4L1 mRNA	CTD	PMID:28973697
Pcp4l1	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of PCP4L1 mRNA	CTD	PMID:24780913 and PMID:30047161
Pcp4l1	Rat	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of PCP4L1 mRNA	CTD	PMID:28959563
Pcp4l1	Rat	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of PCP4L1 mRNA	CTD	PMID:23630614 and PMID:25378103
Pcp4l1	Rat	aflatoxin M1	increases expression	ISO	PCP4L1 (Homo sapiens)	6480464	Aflatoxin M1 results in increased expression of PCP4L1 mRNA	CTD	PMID:30928695
Pcp4l1	Rat	benzo[a]pyrene	decreases expression	EXP		6480464	Benzo(a)pyrene results in decreased expression of PCP4L1 mRNA	CTD	PMID:21839799
Pcp4l1	Rat	benzo[a]pyrene	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of PCP4L1 mRNA	CTD	PMID:32417428
Pcp4l1	Rat	benzo[a]pyrene	increases methylation	ISO	PCP4L1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of PCP4L1 exon	CTD	PMID:27901495
Pcp4l1	Rat	benzo[a]pyrene	affects methylation	ISO	PCP4L1 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of PCP4L1 promoter	CTD	PMID:27901495
Pcp4l1	Rat	benzo[b]fluoranthene	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	benzo(b)fluoranthene results in decreased expression of PCP4L1 mRNA	CTD	PMID:26377693
Pcp4l1	Rat	Benzo[k]fluoranthene	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	benzo(k)fluoranthene results in increased expression of PCP4L1 mRNA	CTD	PMID:26377693
Pcp4l1	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Diethylhexyl Phthalate results in decreased expression of PCP4L1 mRNA	CTD	PMID:34319233
Pcp4l1	Rat	bisphenol A	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	bisphenol A results in decreased expression of PCP4L1 mRNA	CTD	PMID:21932408
Pcp4l1	Rat	bisphenol A	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	bisphenol A results in increased expression of PCP4L1 mRNA	CTD	PMID:32156529
Pcp4l1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of PCP4L1 mRNA	CTD	PMID:34947998 and PMID:38750585
Pcp4l1	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of PCP4L1 gene	CTD	PMID:28505145
Pcp4l1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of PCP4L1 mRNA	CTD	PMID:25181051 and PMID:32145629
Pcp4l1	Rat	bisphenol F	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	bisphenol F results in decreased expression of PCP4L1 mRNA	CTD	PMID:30951980
Pcp4l1	Rat	butanal	increases expression	ISO	PCP4L1 (Homo sapiens)	6480464	butyraldehyde results in increased expression of PCP4L1 mRNA	CTD	PMID:26079696
Pcp4l1	Rat	cadmium dichloride	increases expression	EXP		6480464	Cadmium Chloride results in increased expression of PCP4L1 mRNA	CTD	PMID:33453195
Pcp4l1	Rat	cadmium dichloride	decreases expression	ISO	PCP4L1 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of PCP4L1 mRNA	CTD	PMID:38382870
Pcp4l1	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of PCP4L1 mRNA	CTD	PMID:25993096
Pcp4l1	Rat	cantharidin	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Cantharidin results in decreased expression of PCP4L1 mRNA	CTD	PMID:36907384
Pcp4l1	Rat	carbon nanotube	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Nanotubes and Carbon analog results in increased expression of PCP4L1 mRNA	CTD	PMID:25620056
Pcp4l1	Rat	carbon nanotube	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Nanotubes and Carbon results in decreased expression of PCP4L1 mRNA	CTD	PMID:25554681 and PMID:25620056
Pcp4l1	Rat	chlordecone	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Chlordecone results in increased expression of PCP4L1 mRNA	CTD	PMID:33711761
Pcp4l1	Rat	chloroprene	decreases expression	EXP		6480464	Chloroprene results in decreased expression of PCP4L1 mRNA	CTD	PMID:23125180
Pcp4l1	Rat	chlorpyrifos	decreases expression	EXP		6480464	Chlorpyrifos results in decreased expression of PCP4L1 mRNA	CTD	PMID:18668222
Pcp4l1	Rat	choline	multiple interactions	ISO	Pcp4l1 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of PCP4L1 mRNA	CTD	PMID:20938992
Pcp4l1	Rat	dextran sulfate	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Dextran Sulfate results in decreased expression of PCP4L1 mRNA	CTD	PMID:35093514
Pcp4l1	Rat	dibenz[a,h]anthracene	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	1 more ...	CTD	PMID:26377693
Pcp4l1	Rat	dichloroacetic acid	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Dichloroacetic Acid results in decreased expression of PCP4L1 mRNA	CTD	PMID:28962523
Pcp4l1	Rat	dorsomorphin	multiple interactions	ISO	PCP4L1 (Homo sapiens)	6480464	[NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Pcp4l1	Rat	endosulfan	decreases expression	EXP		6480464	Endosulfan results in decreased expression of PCP4L1 mRNA	CTD	PMID:29391264
Pcp4l1	Rat	ethanol	multiple interactions	ISO	Pcp4l1 (Mus musculus)	6480464	Ethanol affects the expression of and affects the splicing of PCP4L1 mRNA	CTD	PMID:30319688
Pcp4l1	Rat	folic acid	multiple interactions	ISO	Pcp4l1 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of PCP4L1 mRNA	CTD	PMID:20938992
Pcp4l1	Rat	furan	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	furan results in decreased expression of PCP4L1 mRNA	CTD	PMID:24183702
Pcp4l1	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of PCP4L1 mRNA	CTD	PMID:33387578
Pcp4l1	Rat	hydrogen peroxide	multiple interactions	ISO	PCP4L1 (Homo sapiens)	6480464	[Hydrogen Peroxide co-treated with Theophylline] results in increased expression of PCP4L1 protein	CTD	PMID:18951874
Pcp4l1	Rat	indole-3-methanol	multiple interactions	EXP		6480464	[indole-3-carbinol co-treated with Diethylnitrosamine] results in increased expression of PCP4L1 mRNA	CTD	PMID:22129741
Pcp4l1	Rat	L-methionine	multiple interactions	ISO	Pcp4l1 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of PCP4L1 mRNA	CTD	PMID:20938992
Pcp4l1	Rat	lead(0)	affects expression	ISO	PCP4L1 (Homo sapiens)	6480464	Lead affects the expression of PCP4L1 mRNA	CTD	PMID:28903495
Pcp4l1	Rat	manganese(II) chloride	decreases expression	EXP		6480464	manganese chloride results in decreased expression of PCP4L1 mRNA	CTD	PMID:28801915
Pcp4l1	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of PCP4L1 mRNA	CTD	PMID:30047161
Pcp4l1	Rat	Monobutylphthalate	increases expression	EXP		6480464	monobutyl phthalate results in increased expression of PCP4L1 mRNA	CTD	PMID:29162477
Pcp4l1	Rat	N-nitrosodiethylamine	multiple interactions	EXP		6480464	[indole-3-carbinol co-treated with Diethylnitrosamine] results in increased expression of PCP4L1 mRNA	CTD	PMID:22129741
Pcp4l1	Rat	N-nitrosomorpholine	increases expression	EXP		6480464	N-nitrosomorpholine results in increased expression of PCP4L1 mRNA	CTD	PMID:19716841
Pcp4l1	Rat	nevirapine	decreases expression	EXP		6480464	Nevirapine results in decreased expression of PCP4L1 mRNA	CTD	PMID:23947594
Pcp4l1	Rat	nitrates	multiple interactions	ISO	Pcp4l1 (Mus musculus)	6480464	[Particulate Matter results in increased abundance of Nitrates] which results in increased expression of PCP4L1 mRNA	CTD	PMID:35964746
Pcp4l1	Rat	orphenadrine	affects expression	EXP		6480464	Orphenadrine affects the expression of PCP4L1 mRNA	CTD	PMID:23665939
Pcp4l1	Rat	ozone	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Ozone results in decreased expression of PCP4L1 mRNA	CTD	PMID:12763052 and PMID:33026818
Pcp4l1	Rat	ozone	multiple interactions	ISO	Pcp4l1 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of PCP4L1 mRNA and [Air Pollutants results in increased abundance of Ozone] which results in decreased expression of PCP4L1 mRNA	CTD	PMID:34911549
Pcp4l1	Rat	panobinostat	multiple interactions	ISO	PCP4L1 (Homo sapiens)	6480464	[NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of PCP4L1 mRNA	CTD	PMID:27188386
Pcp4l1	Rat	paracetamol	affects expression	ISO	Pcp4l1 (Mus musculus)	6480464	Acetaminophen affects the expression of PCP4L1 mRNA	CTD	PMID:17562736
Pcp4l1	Rat	paraquat	decreases expression	EXP		6480464	Paraquat results in decreased expression of PCP4L1 mRNA	CTD	PMID:32680482
Pcp4l1	Rat	parathion	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Parathion results in increased expression of PCP4L1 mRNA	CTD	PMID:34813904
Pcp4l1	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Pcp4l1 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Pectins] results in decreased expression of PCP4L1 mRNA	CTD	PMID:36331819
Pcp4l1	Rat	phenobarbital	multiple interactions	ISO	Pcp4l1 (Mus musculus)	6480464	NR1I3 protein affects the reaction [Phenobarbital results in increased expression of PCP4L1 mRNA]	CTD	PMID:19482888
Pcp4l1	Rat	phenobarbital	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Phenobarbital results in decreased expression of PCP4L1 mRNA	CTD	PMID:23091169
Pcp4l1	Rat	phenobarbital	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Phenobarbital results in increased expression of PCP4L1 mRNA	CTD	PMID:19482888
Pcp4l1	Rat	pirinixic acid	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	pirinixic acid results in decreased expression of PCP4L1 mRNA	CTD	PMID:23811191
Pcp4l1	Rat	pregnenolone 16alpha-carbonitrile	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Pregnenolone Carbonitrile results in decreased expression of PCP4L1 mRNA	CTD	PMID:28903501
Pcp4l1	Rat	rac-lactic acid	increases expression	ISO	PCP4L1 (Homo sapiens)	6480464	Lactic Acid results in increased expression of PCP4L1 mRNA	CTD	PMID:30851411
Pcp4l1	Rat	rotenone	affects expression	EXP		6480464	Rotenone affects the expression of PCP4L1 mRNA	CTD	PMID:28374803
Pcp4l1	Rat	SB 431542	multiple interactions	ISO	PCP4L1 (Homo sapiens)	6480464	[NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Pcp4l1	Rat	sevoflurane	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Sevoflurane results in increased expression of PCP4L1 protein	CTD	PMID:35249202
Pcp4l1	Rat	silver atom	affects expression	ISO	Pcp4l1 (Mus musculus)	6480464	Silver affects the expression of PCP4L1 mRNA	CTD	PMID:27131904
Pcp4l1	Rat	silver(0)	affects expression	ISO	Pcp4l1 (Mus musculus)	6480464	Silver affects the expression of PCP4L1 mRNA	CTD	PMID:27131904
Pcp4l1	Rat	sodium arsenite	decreases expression	ISO	PCP4L1 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of PCP4L1 mRNA	CTD	PMID:29301061
Pcp4l1	Rat	sodium arsenite	increases expression	ISO	PCP4L1 (Homo sapiens)	6480464	sodium arsenite results in increased expression of PCP4L1 mRNA	CTD	PMID:38568856
Pcp4l1	Rat	sulforaphane	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	sulforaphane results in increased expression of PCP4L1 mRNA	CTD	PMID:30529165
Pcp4l1	Rat	sunitinib	decreases expression	ISO	PCP4L1 (Homo sapiens)	6480464	Sunitinib results in decreased expression of PCP4L1 mRNA	CTD	PMID:31533062
Pcp4l1	Rat	testosterone	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Testosterone results in decreased expression of PCP4L1 mRNA	CTD	PMID:20844152
Pcp4l1	Rat	tetraphene	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	benz(a)anthracene results in increased expression of PCP4L1 mRNA	CTD	PMID:26377693
Pcp4l1	Rat	Theaflavin 3,3'-digallate	affects expression	ISO	PCP4L1 (Homo sapiens)	6480464	theaflavin-3 and 3'-digallate affects the expression of PCP4L1 mRNA	CTD	PMID:34925699
Pcp4l1	Rat	theophylline	multiple interactions	ISO	PCP4L1 (Homo sapiens)	6480464	[Hydrogen Peroxide co-treated with Theophylline] results in increased expression of PCP4L1 protein	CTD	PMID:18951874
Pcp4l1	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of PCP4L1 mRNA	CTD	PMID:34492290
Pcp4l1	Rat	titanium dioxide	decreases expression	ISO	Pcp4l1 (Mus musculus)	6480464	titanium dioxide results in decreased expression of PCP4L1 mRNA	CTD	PMID:23557971
Pcp4l1	Rat	titanium dioxide	decreases methylation	ISO	Pcp4l1 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of PCP4L1 gene	CTD	PMID:35295148
Pcp4l1	Rat	trichostatin A	increases expression	ISO	PCP4L1 (Homo sapiens)	6480464	trichostatin A results in increased expression of PCP4L1 mRNA	CTD	PMID:24935251
Pcp4l1	Rat	Triptolide	affects expression	ISO	Pcp4l1 (Mus musculus)	6480464	triptolide affects the expression of PCP4L1 mRNA	CTD	PMID:32835833
Pcp4l1	Rat	valproic acid	increases expression	ISO	Pcp4l1 (Mus musculus)	6480464	Valproic Acid results in increased expression of PCP4L1 mRNA	CTD	PMID:21427059
Pcp4l1	Rat	valproic acid	multiple interactions	ISO	PCP4L1 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of PCP4L1 mRNA	CTD	PMID:27188386
Pcp4l1	Rat	valproic acid	increases expression	ISO	PCP4L1 (Homo sapiens)	6480464	Valproic Acid results in increased expression of PCP4L1 mRNA	CTD	PMID:23179753 more ...
Pcp4l1	Rat	valproic acid	decreases methylation	ISO	PCP4L1 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of PCP4L1 gene	CTD	PMID:29154799
Pcp4l1	Rat	valproic acid	affects expression	ISO	PCP4L1 (Homo sapiens)	6480464	Valproic Acid affects the expression of PCP4L1 mRNA	CTD	PMID:25979313
Pcp4l1	Rat	vinclozolin	increases expression	EXP		6480464	vinclozolin results in increased expression of PCP4L1 mRNA	CTD	PMID:23034163
Pcp4l1	Rat	vinclozolin	increases methylation	EXP		6480464	vinclozolin results in increased methylation of PCP4L1 gene	CTD	PMID:31079544
Pcp4l1	Rat	vinclozolin	decreases methylation	EXP		6480464	vinclozolin results in decreased methylation of PCP4L1 gene	CTD	PMID:31682807

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932

Pcp4l1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,121,463 - 86,145,097 (-)	NCBI		GRCr8
mRatBN7.2	13	83,588,992 - 83,612,631 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,588,992 - 83,609,966 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	86,094,718 - 86,118,283 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,492,955 - 87,516,526 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,724,551 - 84,747,967 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,542,377 - 89,565,920 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,542,378 - 89,565,813 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	94,169,877 - 94,192,679 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	87,059,476 - 87,083,085 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	83,220,194 - 83,243,617 (-)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

PCP4L1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	161,258,745 - 161,285,450 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	161,258,745 - 161,285,450 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	161,228,535 - 161,255,240 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	159,495,141 - 159,521,864 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	134,295,731 - 134,322,384 (+)	NCBI		Celera
Cytogenetic Map	1	q23.3	NCBI
HuRef	1	132,585,466 - 132,612,114 (+)	NCBI		HuRef
CHM1_1	1	162,624,748 - 162,651,470 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	160,396,195 - 160,422,865 (+)	NCBI		T2T-CHM13v2.0

Pcp4l1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	171,000,833 - 171,023,837 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	171,000,831 - 171,023,837 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	171,173,264 - 171,196,268 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	171,173,262 - 171,196,268 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	173,103,395 - 173,126,399 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	173,009,934 - 173,042,355 (-)	NCBI		MGSCv36	mm8
Celera	1	173,621,388 - 173,644,321 (-)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.11	NCBI

Pcp4l1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	13,004,267 - 13,022,686 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	13,004,267 - 13,022,686 (+)	NCBI	ChiLan1.0	ChiLan1.0

PCP4L1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	88,568,411 - 88,593,565 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	88,258,694 - 88,283,850 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	136,670,879 - 136,696,039 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	140,582,726 - 140,607,520 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	140,582,726 - 140,607,520 (+)	Ensembl	panpan1.1		panPan2

PCP4L1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,221,334 - 21,242,578 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,222,253 - 21,243,195 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	21,296,228 - 21,317,391 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	21,339,195 - 21,360,343 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	21,340,108 - 21,360,423 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,236,310 - 21,257,456 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	21,642,402 - 21,663,571 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	22,050,868 - 22,072,046 (-)	NCBI		UU_Cfam_GSD_1.0

Pcp4l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	7,335,670 - 7,358,699 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936903	544,348 - 566,718 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936903	544,343 - 567,357 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCP4L1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,186,447 - 89,213,114 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	89,186,445 - 89,212,852 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	97,044,311 - 97,069,529 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCP4L1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	2,699,360 - 2,724,201 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	1,747,568 - 1,772,618 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pcp4l1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	123,047 - 139,600 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	123,047 - 139,584 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Pcp4l1
100 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	348
Count of miRNA genes:	200
Interacting mature miRNAs:	240
Transcripts:	ENSRNOT00000004347
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	66451204	106807694	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	74862117	85581182	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	46088046	91088046	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	59874408	85581182	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34663461	87525369	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	65103704	106807694	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	56056920	101056920	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	80753256	106807694	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	69060519	86800898	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	46197976	84753113	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	69060519	86800898	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	74023918	97213863	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	52362171	97362171	Rat
12879441	Bp396	Blood pressure QTL 396			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45699983	90699983	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	65103704	106807694	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	69060519	86800898	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	61825626	106807694	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	74862117	101339893	Rat

BE102416

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,589,587 - 83,589,758 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,542,973 - 89,543,143	NCBI	Rnor6.0
Rnor_5.0	13	94,170,473 - 94,170,643	UniSTS	Rnor5.0
RGSC_v3.4	13	87,060,072 - 87,060,242	UniSTS	RGSC3.4
Celera	13	83,220,790 - 83,220,960	UniSTS
RH 3.4 Map	13	552.3	UniSTS
Cytogenetic Map	13	q24	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001126093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC162039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004347 ⟹ ENSRNOP00000004347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	83,588,992 - 83,591,797 (-)	Ensembl
Rnor_6.0 Ensembl	13	89,542,378 - 89,565,813 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078402 ⟹ ENSRNOP00000075716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	89,543,509 - 89,545,182 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101106 ⟹ ENSRNOP00000097708

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	83,588,992 - 83,609,966 (-)	Ensembl

RefSeq Acc Id:

NM_001126093 ⟹ NP_001119565

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,121,463 - 86,144,899 (-)	NCBI
mRatBN7.2	13	83,588,992 - 83,612,430 (-)	NCBI
Rnor_6.0	13	89,542,377 - 89,565,813 (-)	NCBI
Rnor_5.0	13	94,169,877 - 94,192,679 (-)	NCBI
RGSC_v3.4	13	87,059,476 - 87,083,085 (-)	RGD
Celera	13	83,220,194 - 83,243,617 (-)	NCBI

Sequence:

show sequence

CCCTGAGCTACGCTGCAGCCTGAGCGCCTGGGGCAGCACGAAGCAGCAGCTCGTGCCGTGCACTCTCCCCTCCAAGACCGCTAGGGCCTCTGCCCCGGAGCCCAGCAACTCTCGGCCGTAGTCCACGC
ACGCATCTCCCAAGACCCCTTTGCCTCACCTGCGCCTGCCACGCCCCGTCCTGCCGCCGGGATGAGCGAGCTTAACACCAAAACACCTCCAGCAACCAGCCAGGCCTCTGACCCTGAGGAAAAAGGGA
AACCTGGCAGCATTAAGAAGGCCGAGGAGGAGGAAGAAATTGACATCGACTTGACGGCACCAGAGACAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTCCGGCGCTTCCAGAAGAGGAAAAAGGAT
TCCAGTTCCTGAATAACCAGACTTCCCCTTCACCCTTCTACTTCCTCTGTCCCCTCCACAGCTCTGACTCTCACGTGTCTCATCCCCTCATCCCTCTAGCCTGTCCCTGAGGCAAGCTTACCCTTTAT
ATATTCTTGTCTCAGGCTCTCTTAAGCCATCACAGTAGTAGAGGCACAAGGACATGAGAAGGCCAAGACTCTAGTTGTTAGTCACTAGGCTAAGAGTGGATCAGTCCATTTAGGAGAACTAAAGGTTC
TGAGGTTTGACTCTCCCCTTCACCTAGTGCTAAGGGGAAGAGGGGAAAGCCCTCAGAGTGCAGAGCCTCAAGGTGGGGCACATGTAGGCTTCTGCCAGTTGCACCATTAACACATCAGATGACACTTT
CAGGTCCTTCTGCACAGCCCCTCCCATCTCCGTGATTCAGCCTCAGTGCAGCTGCCCTTTCTCCCGGGGAAGACCTGAATCAAGAAGCTTGCAGAATGTGGGGGTGCATGCCTTTAGTCCCAGCACTT
GGAAGGCAGAGGCAGCTGGATCCTTGTGTGTTCAAGCCAGCCTGGGTGACATAGTGAATTCTAGGTTAGCCAAGGTTACAAAACAAAATAAAAACAAAAACAAAATAAAAAAACCCTGCCCATGCAAA
AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGGCAGCTCAATACATTAGTGCATGCTGAGTAGATTCCTGCCAAGGAAAGAAAACTGGGGCTGGTAGA
GACCAGGAAAAGCTTCCTTCAGGCTGAGGTCAGAGAAGCCAGAGATGGCAGAAGGTTCAGGCCAGGAGATGAAACTGAGAGATGTTTAGGAAGGAAAAAAAAAAAAAGCAGAGAAGGCCAAGATGTCT
GAAGCTATATGCTATCGTTGTTAACTAAATAGTACATGAGGGGCTCTCTGGCCTTTGCTAATCTGCCTACCTCTTTACCCGTCCCCATCTCTAGTCATCCCTAGAGCCATGTGAACCCAGTGACACCC
CTGTAGTTCTCAGCCACCCTACTGTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTTAATAATTATGACAATAAAAAAAGCCCTCAAATGGGGGCATTGAACCTCTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017598936 ⟹ XP_017454425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,121,463 - 86,145,097 (-)	NCBI
mRatBN7.2	13	83,588,992 - 83,612,631 (-)	NCBI
Rnor_6.0	13	89,543,431 - 89,565,920 (-)	NCBI

Sequence:

show sequence

CAGAGTTTCTATTGGTTGGGCTGGAAGCAGGGAACCGCAGCTCACTATAAAAGGTGGAGCCGGT
CAAGGCGCGGGGAGCTGCTGACAGGACCAGGTCAGAAGGGGCTCCCTGAGCTACGCTGCAGCCTGAGCGCCTGGGGCAGCACGAAGCAGCAGCTCGTGCCGTGCACTCTCCCCTCCAAGACCGCTAGG
GCCTCTGCCCCGGAGCCCAGCAACTCTCGGCCGTAGTCCACGCACGCATCTCCCAAGACCCCTTTGCCTCACCTGCGCCTGCCACGCCCCGTCCTGCCGCCGGGATGAGCGAGAGCAGAGTCCACACC
TTTGAGCTGCAGGGAAAACAAGAGCATTCGCTTAGGAACTGGCACCTACTGGCAAGTGAGGGAATGGAACATTGGAATACATCAGGCCCAGAGGAGGGAGTGGATGAAAGGAATACAAGAAGCTTAAC
ACCAAAACACCTCCAGCAACCAGCCAGGCCTCTGACCCTGAGGAAAAAGGGAAACCTGGCAGCATTAAGAAGGCCGAGGAGGAGGAAGAAATTGACATCGACTTGACGGCACCAGAGACAGAGAAGGC
CGCCCTTGCAATCCAGGGCAAGTTCCGGCGCTTCCAGAAGAGGAAAAAGGATTCCAGTTCCTGAATAACCAGACTTCCCCTTCACCCTTCTACTTCCTCTGTCCCCTCCACAGCTCTGACTCTCACGT
GTCTCATCCCCTCA

hide sequence

RefSeq Acc Id:

XM_063272605 ⟹ XP_063128675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,121,463 - 86,144,603 (-)	NCBI


Protein RefSeqs	NP_001119565	(Get FASTA)	NCBI Sequence Viewer
	XP_017454425	(Get FASTA)	NCBI Sequence Viewer
	XP_063128675	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI62039	(Get FASTA)	NCBI Sequence Viewer
	EDL94604	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004347
	ENSRNOP00000004347.4
	ENSRNOP00000097708
	ENSRNOP00000097708.1

RefSeq Acc Id:	NP_001119565 ⟸ NM_001126093
- UniProtKB:	B1WC83 (UniProtKB/TrEMBL), D4A945 (UniProtKB/TrEMBL), A0A8J8XIE2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSELNTKTPPATSQASDPEEKGKPGSIKKAEEEEEIDIDLTAPETEKAALAIQGKFRRFQKRKKDSSS hide sequence

RefSeq Acc Id:	XP_017454425 ⟸ XM_017598936
- Peptide Label:	isoform X1
- UniProtKB:	A6JFU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSESRVHTFELQGKQEHSLRNWHLLASEGMEHWNTSGPEEGVDERNTRSLTPKHLQQPARPLTLRKKGNLAALRRPRRRKKLTST hide sequence

Ensembl Acc Id:

ENSRNOP00000004347 ⟸ ENSRNOT00000004347

Ensembl Acc Id:

ENSRNOP00000075716 ⟸ ENSRNOT00000078402

Ensembl Acc Id:

ENSRNOP00000097708 ⟸ ENSRNOT00000101106

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2KBA5-F1-model_v2	AlphaFold	A0A0G2KBA5	1-68	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13698995

Promoter ID:

EPDNEW_R9520

Type:

single initiation site

Name:

Pcp4l1_1

Description:

Purkinje cell protein 4-like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	89,565,845 - 89,565,905	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-17386	BioCyc
Ensembl Genes	ENSRNOG00000003209	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004347	ENTREZGENE
	ENSRNOT00000004347.6	UniProtKB/TrEMBL
	ENSRNOT00000101106	ENTREZGENE
	ENSRNOT00000101106.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7099690	IMAGE-MGC_LOAD
InterPro	Calmodulin_Regulator_PCP4-like	UniProtKB/TrEMBL
KEGG Report	rno:685448	UniProtKB/TrEMBL
MGC_CLONE	MGC:187968	IMAGE-MGC_LOAD
NCBI Gene	685448	ENTREZGENE
PANTHER	IG-LIKE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PTHR15359:SF5	UniProtKB/TrEMBL
PhenoGen	Pcp4l1	PhenoGen
PROSITE	PS50096	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003209	RatGTEx
UniProt	A0A8I6AUS6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8J8XIE2	ENTREZGENE, UniProtKB/TrEMBL
	A6JFU7	ENTREZGENE, UniProtKB/TrEMBL
	B1WC83	ENTREZGENE, UniProtKB/TrEMBL
	D4A945	ENTREZGENE
UniProt Secondary	D4A945	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-07-08	Pcp4l1	Purkinje cell protein 4-like 1	LOC678810	hypothetical protein LOC678810	Data merged from RGD:1595605	1643240	APPROVED
2008-03-05	Pcp4l1	Purkinje cell protein 4-like 1	LOC685448	hypothetical protein LOC685448	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC685448	hypothetical protein LOC685448			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC678810	hypothetical protein LOC678810			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar