Ipo8 (importin 8) - Rat Genome Database

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Gene: Ipo8 (importin 8) Rattus norvegicus
Analyze
Symbol: Ipo8
Name: importin 8
RGD ID: 1593688
Description: Predicted to enable nuclear import signal receptor activity. Predicted to be involved in protein import into nucleus. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol and nuclear envelope. Orthologous to human IPO8 (importin 8); INTERACTS WITH amphetamine; (1->4)-beta-D-glucan (ortholog); 1,2-dimethylhydrazine (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AABR07062570.1; importin-8; LOC686774; similar to Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,460,583 - 183,529,259 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4183,460,583 - 183,524,519 (-)EnsemblGRCr8
mRatBN7.24181,729,216 - 181,793,672 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4181,729,220 - 181,793,161 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4187,999,563 - 188,064,053 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04183,784,091 - 183,848,583 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04182,404,583 - 182,469,077 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd4185,770,622 - 185,834,727 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive4183,408,192 - 183,472,297 (-)NCBILyon_Normotensive
Lyon_Hypertensive4183,903,712 - 183,967,816 (-)NCBILyon_Hypertensive
F344_StmMcwi4183,118,215 - 183,182,323 (-)NCBIF344_StmMcwi
Rnor_6.04183,228,688 - 183,295,253 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,229,985 - 183,293,999 (-)NCBIrn6Rnor6.0
Rnor_5.04247,359,871 - 247,424,869 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera4170,197,109 - 170,259,830 (-)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA)
nuclear envelope  (IBA)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25968067  


Genomics

Comparative Map Data
Ipo8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,460,583 - 183,529,259 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4183,460,583 - 183,524,519 (-)EnsemblGRCr8
mRatBN7.24181,729,216 - 181,793,672 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4181,729,220 - 181,793,161 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4187,999,563 - 188,064,053 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04183,784,091 - 183,848,583 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04182,404,583 - 182,469,077 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd4185,770,622 - 185,834,727 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive4183,408,192 - 183,472,297 (-)NCBILyon_Normotensive
Lyon_Hypertensive4183,903,712 - 183,967,816 (-)NCBILyon_Hypertensive
F344_StmMcwi4183,118,215 - 183,182,323 (-)NCBIF344_StmMcwi
Rnor_6.04183,228,688 - 183,295,253 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,229,985 - 183,293,999 (-)NCBIrn6Rnor6.0
Rnor_5.04247,359,871 - 247,424,869 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera4170,197,109 - 170,259,830 (-)NCBICelera
Cytogenetic Map4q44NCBI
IPO8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,628,988 - 30,695,869 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,628,981 - 30,695,883 (-)Ensemblhg38GRCh38
GRCh371230,781,922 - 30,848,803 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361230,673,189 - 30,740,018 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341230,673,189 - 30,740,018NCBI
Celera1235,924,748 - 35,991,765 (-)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1230,547,280 - 30,614,305 (-)NCBIHuRef
CHM1_11230,746,941 - 30,813,955 (-)NCBICHM1_1
T2T-CHM13v2.01230,503,650 - 30,570,532 (-)NCBIT2T-CHM13v2.0
Ipo8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396148,672,181 - 148,732,977 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6148,672,181 - 148,732,965 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386148,770,683 - 148,832,931 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6148,770,683 - 148,831,467 (-)Ensemblmm10GRCm38
MGSCv376148,719,206 - 148,779,989 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366148,727,854 - 148,788,637 (-)NCBIMGSCv36mm8
Celera6151,807,825 - 151,869,431 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.57NCBI
Ipo8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555054,490,598 - 4,575,213 (+)Ensembl
ChiLan1.0NW_0049555054,490,738 - 4,574,969 (+)NCBIChiLan1.0ChiLan1.0
IPO8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21066,086,749 - 66,157,526 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11266,086,888 - 66,153,912 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01255,588,898 - 55,655,894 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11258,216,536 - 58,282,985 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1258,216,536 - 58,282,985 (+)EnsemblpanPan2panpan1.1
IPO8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12717,568,938 - 17,640,719 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2717,568,937 - 17,638,842 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2728,778,208 - 28,849,711 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02717,751,925 - 17,823,426 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2717,751,905 - 17,823,419 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12717,561,215 - 17,632,884 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02717,592,139 - 17,663,736 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02728,930,300 - 29,001,855 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ipo8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494578,176,690 - 78,242,056 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366075,009,972 - 5,159,341 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IPO8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl543,099,749 - 43,182,803 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1543,099,749 - 43,182,807 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2546,786,263 - 46,869,197 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IPO8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11130,314,477 - 30,381,306 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1130,314,201 - 30,381,241 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660694,617,262 - 4,684,748 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ipo8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247785,099,647 - 5,195,012 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247785,099,360 - 5,196,880 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ipo8
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v166,411,036 - 6,470,212 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:83
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000070949
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat

Markers in Region
RH128008  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24181,729,442 - 181,729,642 (+)MAPPERmRatBN7.2
Rnor_6.04183,223,146 - 183,223,345NCBIRnor6.0
Rnor_5.04247,354,495 - 247,354,694UniSTSRnor5.0
Celera4170,197,336 - 170,197,535UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 52 67 138 95 11 51 36 32 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000079695   ⟹   ENSRNOP00000073839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4183,460,583 - 183,524,519 (-)Ensembl
mRatBN7.2 Ensembl4181,729,220 - 181,793,161 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154355   ⟹   ENSRNOP00000102417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4183,461,820 - 183,524,519 (-)Ensembl
RefSeq Acc Id: NM_001400882   ⟹   NP_001387811
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,460,583 - 183,524,519 (-)NCBI
mRatBN7.24181,729,216 - 181,793,165 (-)NCBI
Dahl_SR_JrHsd4185,770,622 - 185,834,727 (-)NCBI
Lyon_Normotensive4183,408,192 - 183,472,297 (-)NCBI
Lyon_Hypertensive4183,903,712 - 183,967,816 (-)NCBI
F344_StmMcwi4183,118,215 - 183,182,323 (-)NCBI
RefSeq Acc Id: XM_039108919   ⟹   XP_038964847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,460,583 - 183,529,252 (-)NCBI
mRatBN7.24181,729,216 - 181,793,672 (-)NCBI
RefSeq Acc Id: XM_063286698   ⟹   XP_063142768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,460,583 - 183,529,259 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387811 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964847 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142768 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073839
  ENSRNOP00000073839.2
  ENSRNOP00000102417.1
RefSeq Acc Id: XP_038964847   ⟸   XM_039108919
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000073839   ⟸   ENSRNOT00000079695
RefSeq Acc Id: NP_001387811   ⟸   NM_001400882
- UniProtKB: A0A0G2K6J6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142768   ⟸   XM_063286698
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000102417   ⟸   ENSRNOT00000154355
Protein Domains
Importin N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K6J6-F1-model_v2 AlphaFold A0A0G2K6J6 1-966 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593688 AgrOrtholog
BioCyc Gene G2FUF-42376 BioCyc
Ensembl Genes ENSRNOG00000056041 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079695 ENTREZGENE
  ENSRNOT00000079695.3 UniProtKB/TrEMBL
  ENSRNOT00000154355.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
  XPO2_central UniProtKB/TrEMBL
NCBI Gene 686774 ENTREZGENE
PANTHER IMPORTIN-7, 8, 11 UniProtKB/TrEMBL
  IMPORTIN-8 UniProtKB/TrEMBL
Pfam Cse1 UniProtKB/TrEMBL
  IBN_N UniProtKB/TrEMBL
  TPR_IPO11 UniProtKB/TrEMBL
PhenoGen Ipo8 PhenoGen
PROSITE IMPORTIN_B_NT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056041 RatGTEx
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0G2K6J6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LLV8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Ipo8  importin 8  AABR07062570.1    Data merged from RGD:15009922 737654 PROVISIONAL
2019-11-08 AABR07062570.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2019-08-08 Ipo8  importin 8  LOC686774  similar to Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC686774  similar to Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)      Symbol and Name status set to provisional 70820 PROVISIONAL