Caprin2 (caprin family member 2) - Rat Genome Database

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Gene: Caprin2 (caprin family member 2) Rattus norvegicus
Analyze
Symbol: Caprin2
Name: caprin family member 2
RGD ID: 1593683
Description: Predicted to enable signaling receptor binding activity. Predicted to be involved in several processes, including positive regulation of canonical Wnt signaling pathway; positive regulation of dendritic spine morphogenesis; and positive regulation of transcription by RNA polymerase II. Predicted to be located in several cellular components, including centrosome; mitochondrion; and nucleoplasm. Predicted to be part of receptor complex. Predicted to be active in cytoplasm. Orthologous to human CAPRIN2 (caprin family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; paracetamol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adiponectin r; Adir; caprin-2; cytoplasmic activation/proliferation-associated protein 2; LOC686779; Rng140; similar to C1q domain containing 1 isoform 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,537,935 - 183,592,162 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4183,537,430 - 183,592,809 (-)EnsemblGRCr8
mRatBN7.24181,806,105 - 181,860,754 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4181,806,575 - 181,860,830 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4188,077,467 - 188,135,699 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04183,861,997 - 183,920,226 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04182,482,491 - 182,540,722 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd4185,848,150 - 185,906,342 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive4183,485,720 - 183,543,911 (-)NCBILyon_Normotensive
Lyon_Hypertensive4183,981,239 - 184,039,431 (-)NCBILyon_Hypertensive
F344_StmMcwi4183,195,746 - 183,253,940 (-)NCBIF344_StmMcwi
Rnor_6.04183,304,993 - 183,374,195 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,305,813 - 183,374,195 (-)Ensemblrn6Rnor6.0
Rnor_5.04247,436,446 - 247,504,605 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera4170,272,780 - 170,329,622 (-)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
cytosol  (ISO)
mitochondrion  (ISO)
plasma membrane  (IEA)
receptor complex  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14593112   PMID:18762581   PMID:20516077   PMID:26559902   PMID:29279858   PMID:35051932  


Genomics

Comparative Map Data
Caprin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,537,935 - 183,592,162 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4183,537,430 - 183,592,809 (-)EnsemblGRCr8
mRatBN7.24181,806,105 - 181,860,754 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4181,806,575 - 181,860,830 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4188,077,467 - 188,135,699 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04183,861,997 - 183,920,226 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04182,482,491 - 182,540,722 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd4185,848,150 - 185,906,342 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive4183,485,720 - 183,543,911 (-)NCBILyon_Normotensive
Lyon_Hypertensive4183,981,239 - 184,039,431 (-)NCBILyon_Hypertensive
F344_StmMcwi4183,195,746 - 183,253,940 (-)NCBIF344_StmMcwi
Rnor_6.04183,304,993 - 183,374,195 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,305,813 - 183,374,195 (-)Ensemblrn6Rnor6.0
Rnor_5.04247,436,446 - 247,504,605 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera4170,272,780 - 170,329,622 (-)NCBICelera
Cytogenetic Map4q44NCBI
CAPRIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,709,553 - 30,754,951 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,709,512 - 30,823,302 (-)Ensemblhg38GRCh38
GRCh371230,862,487 - 30,907,885 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361230,753,753 - 30,798,715 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1236,005,312 - 36,050,258 (-)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1230,627,850 - 30,672,786 (-)NCBIHuRef
CHM1_11230,827,509 - 30,872,472 (-)NCBICHM1_1
T2T-CHM13v2.01230,584,217 - 30,698,047 (-)NCBIT2T-CHM13v2.0
Caprin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396148,743,990 - 148,797,756 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6148,743,990 - 148,797,735 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386148,842,492 - 148,896,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6148,842,492 - 148,896,237 (-)Ensemblmm10GRCm38
MGSCv376148,791,034 - 148,844,648 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366148,799,658 - 148,853,407 (-)NCBIMGSCv36mm8
Celera6151,880,474 - 151,934,157 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.62NCBI
Caprin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555054,431,415 - 4,477,495 (+)Ensembl
ChiLan1.0NW_0049555054,431,921 - 4,477,434 (+)NCBIChiLan1.0ChiLan1.0
CAPRIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21066,031,586 - 66,076,987 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11266,027,966 - 66,073,380 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01255,529,976 - 55,575,375 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11258,157,568 - 58,202,690 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1258,157,568 - 58,202,690 (+)EnsemblpanPan2panpan1.1
CAPRIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12717,518,966 - 17,560,866 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2717,517,155 - 17,560,511 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2728,857,745 - 28,900,747 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02717,700,516 - 17,743,641 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2717,700,477 - 17,743,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12717,509,755 - 17,552,938 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02717,540,916 - 17,584,108 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,010,138 - 29,053,645 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Caprin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494578,118,412 - 78,162,571 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366074,950,765 - 4,995,936 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366074,951,658 - 4,995,936 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAPRIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl543,044,266 - 43,087,748 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1543,042,910 - 43,087,644 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2546,881,431 - 46,926,382 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAPRIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11130,394,936 - 30,440,888 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1130,394,899 - 30,439,876 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660694,554,765 - 4,603,659 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Caprin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247785,027,406 - 5,080,859 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247785,026,854 - 5,080,741 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Caprin2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v166,484,047 - 6,537,618 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:244
Count of miRNA genes:143
Interacting mature miRNAs:154
Transcripts:ENSRNOT00000070907, ENSRNOT00000073927, ENSRNOT00000074740
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 91 59 6 355 191 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001401070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT867373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LT963081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000070907   ⟹   ENSRNOP00000065469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4183,537,935 - 183,592,102 (-)Ensembl
mRatBN7.2 Ensembl4181,806,575 - 181,860,830 (-)Ensembl
Rnor_6.0 Ensembl4183,347,456 - 183,374,195 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000073927   ⟹   ENSRNOP00000064956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4183,537,935 - 183,591,167 (-)Ensembl
mRatBN7.2 Ensembl4181,806,575 - 181,860,830 (-)Ensembl
Rnor_6.0 Ensembl4183,305,813 - 183,374,195 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000074740   ⟹   ENSRNOP00000064535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4183,537,935 - 183,592,102 (-)Ensembl
mRatBN7.2 Ensembl4181,806,575 - 181,860,830 (-)Ensembl
Rnor_6.0 Ensembl4183,305,813 - 183,374,195 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097069   ⟹   ENSRNOP00000084248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4183,537,935 - 183,592,102 (-)Ensembl
mRatBN7.2 Ensembl4181,806,575 - 181,860,830 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130293   ⟹   ENSRNOP00000099753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4183,537,430 - 183,592,102 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000159367   ⟹   ENSRNOP00000109644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4183,537,935 - 183,592,809 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000173464   ⟹   ENSRNOP00000105840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4183,537,935 - 183,592,809 (-)Ensembl
RefSeq Acc Id: NM_001401070   ⟹   NP_001387999
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,592,102 (-)NCBI
mRatBN7.24181,806,581 - 181,860,753 (-)NCBI
Dahl_SR_JrHsd4185,848,150 - 185,906,342 (-)NCBI
Lyon_Normotensive4183,485,720 - 183,543,911 (-)NCBI
Lyon_Hypertensive4183,981,239 - 184,039,431 (-)NCBI
F344_StmMcwi4183,195,746 - 183,253,940 (-)NCBI
RefSeq Acc Id: XM_039108905   ⟹   XP_038964833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,591,930 (-)NCBI
mRatBN7.24181,806,105 - 181,860,585 (-)NCBI
RefSeq Acc Id: XM_039108906   ⟹   XP_038964834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,591,930 (-)NCBI
mRatBN7.24181,806,105 - 181,860,585 (-)NCBI
RefSeq Acc Id: XM_039108908   ⟹   XP_038964836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,591,930 (-)NCBI
mRatBN7.24181,806,925 - 181,860,584 (-)NCBI
RefSeq Acc Id: XM_039108910   ⟹   XP_038964838
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,591,930 (-)NCBI
mRatBN7.24181,806,925 - 181,860,584 (-)NCBI
RefSeq Acc Id: XM_039108911   ⟹   XP_038964839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,591,931 (-)NCBI
mRatBN7.24181,806,105 - 181,860,585 (-)NCBI
RefSeq Acc Id: XM_039108913   ⟹   XP_038964841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,591,930 (-)NCBI
mRatBN7.24181,806,925 - 181,860,584 (-)NCBI
RefSeq Acc Id: XM_039108916   ⟹   XP_038964844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,572,688 (-)NCBI
mRatBN7.24181,806,925 - 181,841,337 (-)NCBI
RefSeq Acc Id: XM_039108917   ⟹   XP_038964845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,572,701 (-)NCBI
mRatBN7.24181,806,925 - 181,841,349 (-)NCBI
RefSeq Acc Id: XM_039108918   ⟹   XP_038964846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,572,802 (-)NCBI
mRatBN7.24181,806,925 - 181,841,451 (-)NCBI
RefSeq Acc Id: XM_063286699   ⟹   XP_063142769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,591,930 (-)NCBI
RefSeq Acc Id: XM_063286700   ⟹   XP_063142770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,591,931 (-)NCBI
RefSeq Acc Id: XM_063286701   ⟹   XP_063142771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,592,162 (-)NCBI
RefSeq Acc Id: XM_063286702   ⟹   XP_063142772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,592,123 (-)NCBI
RefSeq Acc Id: XM_063286703   ⟹   XP_063142773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,592,162 (-)NCBI
RefSeq Acc Id: XM_063286704   ⟹   XP_063142774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,592,162 (-)NCBI
RefSeq Acc Id: XM_063286705   ⟹   XP_063142775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,591,930 (-)NCBI
RefSeq Acc Id: XM_063286706   ⟹   XP_063142776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,537,935 - 183,573,225 (-)NCBI
RefSeq Acc Id: XM_063286707   ⟹   XP_063142777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,553,390 - 183,591,931 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387999 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964833 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964834 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964836 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964838 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964839 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964841 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964844 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964845 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964846 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142769 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142770 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142771 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142772 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142773 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142774 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142775 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142776 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142777 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ALL27017 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064535.3
  ENSRNOP00000064956
  ENSRNOP00000064956.4
  ENSRNOP00000065469
  ENSRNOP00000065469.3
  ENSRNOP00000084248
  ENSRNOP00000084248.1
  ENSRNOP00000099753
  ENSRNOP00000099753.1
  ENSRNOP00000105840.1
  ENSRNOP00000109644
  ENSRNOP00000109644.1
GenBank Protein SOR70299 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000065469   ⟸   ENSRNOT00000070907
Ensembl Acc Id: ENSRNOP00000064956   ⟸   ENSRNOT00000073927
Ensembl Acc Id: ENSRNOP00000064535   ⟸   ENSRNOT00000074740
RefSeq Acc Id: XP_038964839   ⟸   XM_039108911
- Peptide Label: isoform X5
- UniProtKB: A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964834   ⟸   XM_039108906
- Peptide Label: isoform X2
- UniProtKB: A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964833   ⟸   XM_039108905
- Peptide Label: isoform X1
- UniProtKB: A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964838   ⟸   XM_039108910
- Peptide Label: isoform X4
- UniProtKB: M0R6B1 (UniProtKB/TrEMBL),   A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964841   ⟸   XM_039108913
- Peptide Label: isoform X7
- UniProtKB: M0R7N7 (UniProtKB/TrEMBL),   A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964836   ⟸   XM_039108908
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A0V8 (UniProtKB/TrEMBL),   A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964846   ⟸   XM_039108918
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038964845   ⟸   XM_039108917
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038964844   ⟸   XM_039108916
- Peptide Label: isoform X11
- UniProtKB: A0A0S1LIA8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084248   ⟸   ENSRNOT00000097069
RefSeq Acc Id: NP_001387999   ⟸   NM_001401070
- UniProtKB: M0R6B1 (UniProtKB/TrEMBL),   A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142774   ⟸   XM_063286704
- Peptide Label: isoform X7
- UniProtKB: M0R7N7 (UniProtKB/TrEMBL),   A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142771   ⟸   XM_063286701
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A0V8 (UniProtKB/TrEMBL),   A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142773   ⟸   XM_063286703
- Peptide Label: isoform X5
- UniProtKB: A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142772   ⟸   XM_063286702
- Peptide Label: isoform X9
- UniProtKB: A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142770   ⟸   XM_063286700
- Peptide Label: isoform X8
- UniProtKB: A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142775   ⟸   XM_063286705
- Peptide Label: isoform X7
- UniProtKB: M0R7N7 (UniProtKB/TrEMBL),   A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142769   ⟸   XM_063286699
- Peptide Label: isoform X6
- UniProtKB: A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142776   ⟸   XM_063286706
- Peptide Label: isoform X10
- UniProtKB: A0A0S1LIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142777   ⟸   XM_063286707
- Peptide Label: isoform X13
- UniProtKB: A6IN64 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109644   ⟸   ENSRNOT00000159367
Ensembl Acc Id: ENSRNOP00000105840   ⟸   ENSRNOT00000173464
Ensembl Acc Id: ENSRNOP00000099753   ⟸   ENSRNOT00000130293
Protein Domains
C1q   Caprin-1 dimerization   Cytoplasmic activation/proliferation-associated

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R6B1-F1-model_v2 AlphaFold M0R6B1 1-1028 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593683 AgrOrtholog
BioCyc Gene G2FUF-42374 BioCyc
Ensembl Genes ENSRNOG00000047319 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000070907 ENTREZGENE
  ENSRNOT00000070907.4 UniProtKB/TrEMBL
  ENSRNOT00000073927 ENTREZGENE
  ENSRNOT00000073927.5 UniProtKB/TrEMBL
  ENSRNOT00000074740.5 UniProtKB/TrEMBL
  ENSRNOT00000097069 ENTREZGENE
  ENSRNOT00000097069.2 UniProtKB/TrEMBL
  ENSRNOT00000130293 ENTREZGENE
  ENSRNOT00000130293.1 UniProtKB/TrEMBL
  ENSRNOT00000159367 ENTREZGENE
  ENSRNOT00000159367.1 UniProtKB/TrEMBL
  ENSRNOT00000173464.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/TrEMBL
  Caprin UniProtKB/TrEMBL
  Caprin-1_C UniProtKB/TrEMBL
  Caprin-1_dimer UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
NCBI Gene 686779 ENTREZGENE
PANTHER CAPRIN-2 UniProtKB/TrEMBL
  PTHR22922 UniProtKB/TrEMBL
Pfam C1q UniProtKB/TrEMBL
  Caprin-1_C UniProtKB/TrEMBL
  Caprin-1_dimer UniProtKB/TrEMBL
PhenoGen Caprin2 PhenoGen
PRINTS COMPLEMNTC1Q UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047319 RatGTEx
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt A0A0S1LIA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0V8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L7N2_RAT UniProtKB/TrEMBL
  A0ABK0LMS0_RAT UniProtKB/TrEMBL
  A0ABK0M449_RAT UniProtKB/TrEMBL
  A6IN64 ENTREZGENE, UniProtKB/TrEMBL
  M0R577_RAT UniProtKB/TrEMBL
  M0R6B1 ENTREZGENE, UniProtKB/TrEMBL
  M0R7N7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-16 Caprin2  caprin family member 2  LOC686779  similar to C1q domain containing 1 isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC686779  similar to C1q domain containing 1 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL