Diaph3 (diaphanous-related formin 3) - Rat Genome Database

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Gene: Diaph3 (diaphanous-related formin 3) Rattus norvegicus
Analyze
Symbol: Diaph3
Name: diaphanous-related formin 3
RGD ID: 1593287
Description: Predicted to enable actin binding activity; microtubule binding activity; and protein homodimerization activity. Involved in spermatogenesis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ESCRT I complex and filamentous actin. Predicted to be active in several cellular components, including cleavage furrow; cytoskeleton; and stereocilia tip-link density. Human ortholog(s) of this gene implicated in autosomal dominant auditory neuropathy 1. Orthologous to human DIAPH3 (diaphanous related formin 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Diap3; diaphanous homolog 3; diaphanous homolog 3 (Drosophila); DRF3; LOC290396; mDIA2; similar to Protein diaphanous homolog 3 (Diaphanous-related formin-3) (DRF3) (mDIA2) (p134mDIA2)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Diaph3Tn(sb-T2/Bart3)2.318Mcwi  
Genetic Models: F344-Diaph3Tn(sb-T2/Bart3)2.318Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81568,951,992 - 69,421,623 (-)NCBIGRCr8
mRatBN7.21562,543,375 - 63,013,060 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1562,543,375 - 63,012,975 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1566,656,922 - 67,116,561 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01567,742,429 - 68,202,078 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01564,634,100 - 65,103,658 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01569,928,507 - 70,400,077 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1570,039,424 - 70,399,924 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01573,538,942 - 74,007,617 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41568,905,784 - 69,267,707 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1562,058,201 - 62,525,728 (-)NCBICelera
Cytogenetic Map15q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Diaph3Ratautosomal dominant auditory neuropathy 1  ISODIAPH3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:15520414 more ...
Diaph3Ratchromosome 13q14 deletion syndrome  ISODIAPH3 (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 13q14 deletion syndromeClinVar 
Diaph3RatHearing Loss  ISODIAPH3 (Homo sapiens)8554872ClinVar Annotator: match by term: Hearing impairmentClinVarPMID:25741868 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Diaph3Ratautosomal dominant auditory neuropathy 1  ISODIAPH3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Diaph3Ratautosomal dominant auditory neuropathy 1  ISSDiaph3 (Mus musculus)13592920OMIM:609129MouseDO 
Diaph3Ratcongenital dyserythropoietic anemia  ISSDiaph3 (Mus musculus)13592920 MouseDO 
Object Symbol
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Qualifier
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Reference
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Original Reference(s)
Diaph3Ratautosomal dominant auditory neuropathy 1  ISODIAPH3 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Diaph3Rat(-)-epigallocatechin 3-gallate multiple interactionsISODIAPH3 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of DIAPH3 mRNACTDPMID:22079256
Diaph3Rat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of DIAPH3 mRNACTDPMID:30723492
Diaph3Rat17alpha-ethynylestradiol affects expressionISODiaph3 (Mus musculus)6480464Ethinyl Estradiol affects the expression of DIAPH3 mRNACTDPMID:17555576
Diaph3Rat17alpha-ethynylestradiol multiple interactionsISODiaph3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of DIAPH3 mRNACTDPMID:17942748
Diaph3Rat17alpha-ethynylestradiol increases expressionISODiaph3 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of DIAPH3 mRNACTDPMID:17942748
Diaph3Rat17beta-estradiol multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of DIAPH3 mRNACTDPMID:32741896
Diaph3Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of DIAPH3 mRNACTDPMID:32145629
Diaph3Rat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of DIAPH3 mRNACTDPMID:32741896
Diaph3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISODIAPH3 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of DIAPH3 mRNACTDPMID:22298810
Diaph3Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of DIAPH3 mRNACTDPMID:34747641
Diaph3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of DIAPH3 mRNACTDPMID:32109520
Diaph3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISODiaph3 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of DIAPH3 mRNACTDPMID:21570461 and PMID:26377647
Diaph3Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISODiaph3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of DIAPH3 mRNACTDPMID:17942748
Diaph3Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISODiaph3 (Mus musculus)64804642 more ...CTDPMID:38648751
Diaph3Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISODIAPH3 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of DIAPH3 mRNACTDPMID:28628672
Diaph3Rat4,4'-sulfonyldiphenol multiple interactionsISODIAPH3 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of DIAPH3 mRNACTDPMID:28628672
Diaph3Rat4,4'-sulfonyldiphenol decreases methylationISODIAPH3 (Homo sapiens)6480464bisphenol S results in decreased methylation of DIAPH3 geneCTDPMID:31601247
Diaph3Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of DIAPH3 mRNACTDPMID:24780913
Diaph3Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of DIAPH3 mRNACTDPMID:24780913 and PMID:25825206
Diaph3Ratacetamide increases expressionEXP 6480464acetamide results in increased expression of DIAPH3 mRNACTDPMID:31881176

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Biological Process
1 to 20 of 63 rows

  
Object Symbol
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Original Reference(s)
Diaph3Ratactin crosslink formation acts_upstream_of_or_withinIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratactin crosslink formation acts_upstream_of_or_withinISODiaph3 (Mus musculus)1624291 PMID:18835565RGDPMID:18835565
Diaph3Ratactin cytoskeleton organization involved_inISSUniProtKB:Q9Z2071600115GO_REF:0000024UniProtGO_REF:0000024
Diaph3Ratactin cytoskeleton organization involved_inIEAInterPro:IPR0104731600115GO_REF:0000002InterProGO_REF:0000002
Diaph3Ratactin cytoskeleton organization involved_inIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratactin cytoskeleton organization acts_upstream_of_or_withinISODiaph3 (Mus musculus)1624291 PMID:33036023RGDPMID:33036023
Diaph3Ratactin cytoskeleton organization involved_inISODiaph3 (Mus musculus)1624291 PMID:23558171RGDPMID:23558171
Diaph3Ratactin filament bundle assembly acts_upstream_of_or_withinISODiaph3 (Mus musculus)1624291MGI:5574347 PMID:18264091 and PMID:24239357RGDPMID:18264091 and PMID:24239357
Diaph3Ratactin filament bundle assembly acts_upstream_of_or_withinIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratactin filament organization acts_upstream_of_or_withinISODiaph3 (Mus musculus)1624291 PMID:28255013RGDPMID:28255013
Diaph3Ratactin filament organization acts_upstream_of_or_withinIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratactin filament polymerization involved_inIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratactin filament polymerization involved_inISODiaph3 (Mus musculus)1624291 PMID:23558171RGDPMID:23558171
Diaph3Ratactin filament polymerization acts_upstream_of_or_withinISODiaph3 (Mus musculus)1624291 PMID:23034183 and PMID:33036023RGDPMID:23034183 and PMID:33036023
Diaph3Ratactin filament polymerization involved_inIBAMGI:1194490 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Diaph3Ratactin filament polymerization involved_inISSUniProtKB:Q9Z2071600115GO_REF:0000024UniProtGO_REF:0000024
Diaph3Ratactin nucleation acts_upstream_of_or_withinISODiaph3 (Mus musculus)1624291 PMID:21278336RGDPMID:21278336
Diaph3Ratactin nucleation acts_upstream_of_or_withinIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratautophagosome-lysosome fusion acts_upstream_of_or_withinISODiaph3 (Mus musculus)1624291 PMID:33036023RGDPMID:33036023
Diaph3Ratautophagosome-lysosome fusion acts_upstream_of_or_withinIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
1 to 20 of 25 rows

  
Object Symbol
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Reference
Notes
Source
Original Reference(s)
Diaph3Ratactin filament is_active_inIBAMGI:1927222 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Diaph3Ratactin filament bundle is_active_inIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratactin filament bundle is_active_inISODiaph3 (Mus musculus)1624291 PMID:16556604RGDPMID:16556604
Diaph3Ratcleavage furrow is_active_inIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratcleavage furrow is_active_inISODiaph3 (Mus musculus)1624291 PMID:20660154RGDPMID:20660154
Diaph3Ratcytoplasm located_inISODiaph3 (Mus musculus)1624291 PMID:19117945 and PMID:23558171RGDPMID:19117945 and PMID:23558171
Diaph3Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Diaph3Ratcytoplasm located_inIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Diaph3RatESCRT I complex part_ofIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3RatESCRT I complex part_ofISODiaph3 (Mus musculus)1624291 PMID:33036023RGDPMID:33036023
Diaph3Ratfilamentous actin part_ofIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratfilamentous actin part_ofISODiaph3 (Mus musculus)1624291 PMID:18835565RGDPMID:18835565
Diaph3Ratmicrotubule organizing center is_active_inIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratmicrotubule organizing center is_active_inISODiaph3 (Mus musculus)1624291 PMID:24069443RGDPMID:24069443
Diaph3Ratnucleus located_inIEAUniProtKB:Q9Z207 and ensembl:ENSMUSP000001294201600115GO_REF:0000107EnsemblGO_REF:0000107
Diaph3Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Diaph3Ratnucleus located_inISODiaph3 (Mus musculus)1624291 PMID:19117945 and PMID:23558171RGDPMID:19117945 and PMID:23558171
Diaph3Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Diaph3Ratribbon synapse is_active_inISODiaph3 (Mus musculus)1624291 PMID:23441200RGDPMID:23441200
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Molecular Function
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1 to 11 of 11 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Expression of the diaphanous-related formin proteins mDia1 and mDia2 in the rat testis. Mironova E and Millette CF, Dev Dyn. 2008 Aug;237(8):2170-6.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
PMID:19117945   PMID:20624953   PMID:23558171   PMID:25468996  



Diaph3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81568,951,992 - 69,421,623 (-)NCBIGRCr8
mRatBN7.21562,543,375 - 63,013,060 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1562,543,375 - 63,012,975 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1566,656,922 - 67,116,561 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01567,742,429 - 68,202,078 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01564,634,100 - 65,103,658 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01569,928,507 - 70,400,077 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1570,039,424 - 70,399,924 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01573,538,942 - 74,007,617 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41568,905,784 - 69,267,707 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1562,058,201 - 62,525,728 (-)NCBICelera
Cytogenetic Map15q12NCBI
DIAPH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381359,665,583 - 60,163,928 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1359,665,583 - 60,163,928 (-)EnsemblGRCh38hg38GRCh38
GRCh371360,239,717 - 60,738,062 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361359,137,718 - 59,636,120 (-)NCBINCBI36Build 36hg18NCBI36
Build 341359,246,300 - 59,485,300NCBI
Celera1341,197,875 - 41,696,297 (-)NCBICelera
Cytogenetic Map13q21.2NCBI
HuRef1341,255,633 - 41,428,315 (-)NCBIHuRef
HuRef1340,931,297 - 41,246,568 (-)NCBIHuRef
CHM1_11360,207,261 - 60,705,825 (-)NCBICHM1_1
T2T-CHM13v2.01358,885,077 - 59,383,567 (-)NCBIT2T-CHM13v2.0
Diaph3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391486,892,793 - 87,378,683 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1486,892,803 - 87,378,671 (-)EnsemblGRCm39 Ensembl
GRCm381486,655,357 - 87,141,247 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1486,655,367 - 87,141,235 (-)EnsemblGRCm38mm10GRCm38
MGSCv371487,056,130 - 87,540,921 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361485,488,070 - 85,972,861 (-)NCBIMGSCv36mm8
Celera1484,160,281 - 84,666,148 (-)NCBICelera
Cytogenetic Map14E1NCBI
cM Map1443.95NCBI
Diaph3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540444,653,501 - 45,105,966 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540444,653,308 - 45,106,943 (+)NCBIChiLan1.0ChiLan1.0
DIAPH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21461,191,418 - 61,681,129 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11359,783,100 - 60,272,789 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01340,846,270 - 41,335,920 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11359,568,025 - 60,056,893 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1359,676,307 - 60,056,672 (-)Ensemblpanpan1.1panPan2
DIAPH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12215,573,485 - 16,078,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2215,573,629 - 16,079,031 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2215,549,820 - 16,056,525 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02215,808,339 - 16,315,836 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2215,808,334 - 16,315,281 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12215,507,946 - 16,015,886 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02215,533,302 - 16,040,579 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02215,547,618 - 16,055,719 (-)NCBIUU_Cfam_GSD_1.0
Diaph3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945144,087,524 - 144,542,722 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367051,380,445 - 1,731,280 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367051,381,025 - 1,833,890 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DIAPH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1132,492,740 - 32,994,844 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11132,492,735 - 32,994,854 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21134,600,374 - 34,681,530 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DIAPH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1337,455,326 - 37,951,237 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660575,747,366 - 6,261,536 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Diaph3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474821,045,085 - 21,383,605 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474820,937,242 - 21,439,554 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Diaph3
1910 total Variants

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:19
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000012167
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat

1 to 10 of 24 rows
D15Rat125  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21562,725,486 - 62,725,621 (+)MAPPERmRatBN7.2
Rnor_6.01570,113,265 - 70,113,399NCBIRnor6.0
Rnor_5.01573,722,226 - 73,722,360UniSTSRnor5.0
RGSC_v3.41568,977,804 - 68,977,939RGDRGSC3.4
RGSC_v3.41568,977,805 - 68,977,939UniSTSRGSC3.4
RGSC_v3.11568,993,584 - 68,993,719RGD
Celera1562,240,269 - 62,240,403UniSTS
SHRSP x BN Map1540.2698RGD
SHRSP x BN Map1540.2698UniSTS
Cytogenetic Map15q12UniSTS
D15Rat150  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81568,990,914 - 68,991,125 (+)Marker Load Pipeline
Celera1562,096,879 - 62,097,089UniSTS
RH 3.4 Map15388.63UniSTS
RH 3.4 Map15388.63RGD
SHRSP x BN Map1539.1899RGD
SHRSP x BN Map1539.1899UniSTS
Cytogenetic Map15q12UniSTS
D15Got225  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21562,594,641 - 62,594,908 (+)MAPPERmRatBN7.2
Rnor_6.01569,980,584 - 69,980,850NCBIRnor6.0
Rnor_5.01573,591,185 - 73,591,451UniSTSRnor5.0
RGSC_v3.41568,846,714 - 68,846,980UniSTSRGSC3.4
Celera1562,109,148 - 62,109,414UniSTS
Cytogenetic Map15q12UniSTS
RH137283  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21562,543,430 - 62,543,642 (+)MAPPERmRatBN7.2
Rnor_6.01569,928,560 - 69,928,771NCBIRnor6.0
Rnor_5.01573,538,995 - 73,539,206UniSTSRnor5.0
RGSC_v3.41568,795,219 - 68,795,430UniSTSRGSC3.4
RGSC_v3.41568,587,986 - 68,588,197UniSTSRGSC3.4
Celera1562,058,254 - 62,058,465UniSTS
RH 3.4 Map15388.63UniSTS
Cytogenetic Map15q12UniSTS
UniSTS:237232  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21562,543,460 - 62,543,658 (+)MAPPERmRatBN7.2
Rnor_6.01569,928,590 - 69,928,787NCBIRnor6.0
Rnor_5.01573,539,025 - 73,539,222UniSTSRnor5.0
RGSC_v3.41568,587,970 - 68,588,167UniSTSRGSC3.4
RGSC_v3.41568,795,249 - 68,795,446UniSTSRGSC3.4
Celera1562,058,284 - 62,058,481UniSTS
Cytogenetic Map15q12UniSTS


This gene Diaph3 is modified in the following models/strains:




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000012167   ⟹   ENSRNOP00000012167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1562,543,378 - 63,012,975 (-)Ensembl
Rnor_6.0 Ensembl1570,039,424 - 70,349,983 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087940   ⟹   ENSRNOP00000074783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1570,349,804 - 70,399,924 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103316   ⟹   ENSRNOP00000082597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1562,543,375 - 62,608,052 (-)Ensembl
RefSeq Acc Id: NM_001305172   ⟹   NP_001292101
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81568,951,992 - 69,421,552 (-)NCBI
mRatBN7.21562,543,378 - 63,012,975 (-)NCBI
Rnor_6.01569,928,507 - 70,399,988 (-)NCBI
Celera1562,058,201 - 62,525,728 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063274159   ⟹   XP_063130229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81568,951,992 - 69,421,621 (-)NCBI
RefSeq Acc Id: XM_063274160   ⟹   XP_063130230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81568,951,992 - 69,420,954 (-)NCBI
RefSeq Acc Id: XM_063274162   ⟹   XP_063130232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81568,951,992 - 69,421,064 (-)NCBI
RefSeq Acc Id: XM_063274163   ⟹   XP_063130233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81568,951,992 - 69,421,623 (-)NCBI
RefSeq Acc Id: XM_063274164   ⟹   XP_063130234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81568,951,992 - 69,279,832 (-)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_001292101 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130229 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130230 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130232 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130233 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130234 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM02392 (Get FASTA)   NCBI Sequence Viewer  
  EDM02393 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012167
  ENSRNOP00000082597
GenBank Protein F1LVW7 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_001292101   ⟸   NM_001305172
- UniProtKB: F1LVW7 (UniProtKB/Swiss-Prot),   A0A0G2K8Y4 (UniProtKB/Swiss-Prot),   A0A3B4PZE1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012167   ⟸   ENSRNOT00000012167
Ensembl Acc Id: ENSRNOP00000074783   ⟸   ENSRNOT00000087940
Ensembl Acc Id: ENSRNOP00000082597   ⟸   ENSRNOT00000103316
RefSeq Acc Id: XP_063130233   ⟸   XM_063274163
- Peptide Label: isoform X3
- UniProtKB: A0A3B4PZE1 (UniProtKB/TrEMBL)
DAD   FH1   FH2   GBD/FH3

Name Modeler Protein Id AA Range Protein Structure
AF-F1LVW7-F1-model_v2 AlphaFold F1LVW7 1-1172 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13699856
Promoter ID:EPDNEW_R10378
Type:multiple initiation site
Name:Diaph3_1
Description:diaphanous-related formin 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01570,400,004 - 70,400,064EPDNEW


1 to 40 of 42 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-12934 BioCyc
Ensembl Genes ENSRNOG00000008986 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000012167 ENTREZGENE
  ENSRNOT00000103316 ENTREZGENE
Gene3D-CATH 1.10.20.40 UniProtKB/Swiss-Prot
  1.20.58.2220 UniProtKB/Swiss-Prot
  1.20.58.630 UniProtKB/Swiss-Prot
  1.25.10.10 UniProtKB/Swiss-Prot
  6.10.30.30 UniProtKB/Swiss-Prot
  Formin, FH3 diaphanous domain UniProtKB/Swiss-Prot
InterPro ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  DAD_dom UniProtKB/Swiss-Prot
  DIA_GBD_sf UniProtKB/Swiss-Prot
  FH2_Formin UniProtKB/Swiss-Prot
  FH2_Formin_sf UniProtKB/Swiss-Prot
  FH3_dom UniProtKB/Swiss-Prot
  Formin_Homology_Diaphanous_sf UniProtKB/Swiss-Prot
  GBD/FH3_dom UniProtKB/Swiss-Prot
  GTPase-bd UniProtKB/Swiss-Prot
KEGG Report rno:290396 UniProtKB/Swiss-Prot
NCBI Gene 290396 ENTREZGENE
PANTHER PROTEIN DIAPHANOUS UniProtKB/Swiss-Prot
  PTHR45691:SF9 UniProtKB/Swiss-Prot
Pfam Drf_FH3 UniProtKB/Swiss-Prot
  Drf_GBD UniProtKB/Swiss-Prot
  FH2 UniProtKB/Swiss-Prot
PhenoGen Diaph3 PhenoGen
PROSITE DAD UniProtKB/Swiss-Prot
  FH2 UniProtKB/Swiss-Prot
  GBD_FH3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008986 RatGTEx
SMART Drf_FH3 UniProtKB/Swiss-Prot
  Drf_GBD UniProtKB/Swiss-Prot
  FH2 UniProtKB/Swiss-Prot
Superfamily-SCOP Formin homology 2 domain (FH2 domain) UniProtKB/Swiss-Prot
  SSF48371 UniProtKB/Swiss-Prot
UniProt A0A0G2K8Y4 ENTREZGENE
  A0A3B4PZE1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZXD1_RAT UniProtKB/TrEMBL
1 to 40 of 42 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Diaph3  diaphanous homolog 3 (Drosophila)  Diap3  diaphanous homolog 3 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Diap3  diaphanous homolog 3 (Drosophila)  LOC290396  similar to Protein diaphanous homolog 3 (Diaphanous-related formin-3) (DRF3) (mDIA2) (p134mDIA2)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC290396  similar to Protein diaphanous homolog 3 (Diaphanous-related formin-3) (DRF3) (mDIA2) (p134mDIA2)      Symbol and Name status set to provisional 70820 PROVISIONAL