Nid2-ps16 (nidogen 2, pseudogene 15) - Rat Genome Database

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Gene: Nid2-ps16 (nidogen 2, pseudogene 15) Rattus norvegicus
Analyze
Symbol: Nid2-ps16
Name: nidogen 2, pseudogene 15
RGD ID: 1593261
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC302022; LOC108349516; LOC302022; LOC363417; LOC503326; LOC503391; similar to nidogen 2; similar to nidogen 2 protein; similar to Nidogen-2 precursor (NID-2) (Osteonidogen); uncharacterized LOC108349516; uncharacterized protein LOC108349516; uncharacterized protein LOC302022
Related Functional Gene: Nid2  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8324,770,986 - 24,781,770 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl324,770,883 - 24,772,327 (+)EnsemblGRCr8
mRatBN7.234,086,903 - 4,097,689 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl34,086,582 - 4,113,617 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx36,960,397 - 7,398,652 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0315,435,845 - 16,529,799 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0313,742,277 - 14,793,629 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01239,104 - 56,035 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01233,164 - 56,028 (-)NCBIRnor_5.0Rnor_5.0rn5
Cytogenetic Map3p13NCBI
JBrowse:




References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in Nid2-ps16
87 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 29 61 132 89 11 28 36 32 10 10

Sequence


Ensembl Acc Id: ENSRNOT00000103997   ⟹   ENSRNOP00000092206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl324,770,883 - 24,772,327 (+)Ensembl
mRatBN7.2 Ensembl34,086,582 - 4,113,617 (+)Ensembl
RefSeq Acc Id: NR_172213
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8324,770,986 - 24,781,770 (+)NCBI
mRatBN7.234,086,903 - 4,097,689 (+)NCBI
Protein Sequences
GenBank Protein AAI62000 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092206.1
Ensembl Acc Id: ENSRNOP00000092206   ⟸   ENSRNOT00000103997

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50594 BioCyc
Ensembl Genes ENSRNOG00000064527 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000103997.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9036094 IMAGE-MGC_LOAD
MGC_CLONE MGC:187847 IMAGE-MGC_LOAD
NCBI Gene 302022 ENTREZGENE
PhenoGen Nid2-ps16 PhenoGen
RatGTEx ENSRNOG00000064527 RatGTEx
UniProt B1WC46_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Nid2-ps16  nidogen 2, pseudogene 15  LOC302022  similar to nidogen 2 protein  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC302022  similar to nidogen 2 protein  LOC108349516  uncharacterized LOC108349516  Data merged from RGD:11461805 737654 PROVISIONAL
2016-08-02 LOC108349516  uncharacterized LOC108349516      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-07-29 LOC302022  similar to nidogen 2 protein  LOC503326  similar to nidogen 2  Data merged from RGD:1595653 737654 PROVISIONAL
2015-07-29 LOC302022  similar to nidogen 2 protein  LOC503391  similar to nidogen 2  Data merged from RGD:1595621 737654 PROVISIONAL
2015-07-29 LOC302022  similar to nidogen 2 protein  LOC363417  similar to Nidogen-2 precursor (NID-2) (Osteonidogen)  Data merged from RGD:1589731 737654 PROVISIONAL
2006-11-20 LOC503326  similar to nidogen 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC503391  similar to nidogen 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC302022  similar to nidogen 2 protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC363417  similar to Nidogen-2 precursor (NID-2) (Osteonidogen)      Symbol and Name status set to provisional 70820 PROVISIONAL