Gene: Ccdc169 (coiled-coil domain containing 169) Rattus norvegicus
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Symbol:
Ccdc169
Name:
coiled-coil domain containing 169
RGD ID:
1593170
Description:
Orthologous to human CCDC169 (coiled-coil domain containing 169); INTERACTS WITH acrylamide; bisphenol A; trichloroethene.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
coiled-coil domain-containing protein 169; hypothetical LOC499618; hypothetical protein LOC499618; LOC499618
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 141,471,762 - 141,501,325 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 2 141,471,810 - 141,501,325 (+) Ensembl GRCr8 mRatBN7.2 2 139,321,644 - 139,351,161 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 139,321,670 - 139,351,161 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 2 145,896,509 - 145,926,017 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 144,007,946 - 144,037,450 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 138,640,379 - 138,669,883 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 144,551,382 - 144,581,044 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 144,551,390 - 144,581,044 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 2 163,967,594 - 163,996,902 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 2 144,364,672 - 144,394,530 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 2 133,805,483 - 133,835,099 (+) NCBI Celera Cytogenetic Map 2 q26 NCBI
JBrowse:
Only show annotations with direct experimental evidence (0 objects hidden)
Ccdc169 Rat 1,2-dichloroethane increases expression ISO Ccdc169 (Mus musculus) 6480464 ethylene dichloride results in increased expression of CCDC169 mRNA CTD PMID:28189721 Ccdc169 Rat 4,4'-sulfonyldiphenol decreases expression ISO CCDC169 (Homo sapiens) 6480464 bisphenol S results in decreased expression of CCDC169 mRNA CTD PMID:30616060 Ccdc169 Rat 4,4'-sulfonyldiphenol decreases expression ISO Ccdc169 (Mus musculus) 6480464 bisphenol S results in decreased expression of CCDC169 mRNA CTD PMID:39298647 Ccdc169 Rat acrylamide decreases expression EXP 6480464 Acrylamide results in decreased expression of CCDC169 mRNA CTD PMID:28959563 Ccdc169 Rat Aflatoxin B2 alpha decreases methylation ISO CCDC169 (Homo sapiens) 6480464 aflatoxin B2 results in decreased methylation of CCDC169 intron CTD PMID:30157460 Ccdc169 Rat aldehydo-D-glucose multiple interactions ISO Ccdc169 (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] more ... CTD PMID:37567420 Ccdc169 Rat aldehydo-D-glucose increases expression ISO Ccdc169 (Mus musculus) 6480464 Glucose results in increased expression of CCDC169 mRNA CTD PMID:39922521 Ccdc169 Rat all-trans-retinoic acid decreases expression ISO CCDC169 (Homo sapiens) 6480464 Tretinoin results in decreased expression of CCDC169 mRNA CTD PMID:33167477 Ccdc169 Rat arsenite(3-) multiple interactions ISO CCDC169 (Homo sapiens) 6480464 arsenite inhibits the reaction [G3BP1 protein binds to CCDC169 mRNA] CTD PMID:32406909 Ccdc169 Rat benzo[a]pyrene affects methylation ISO CCDC169 (Homo sapiens) 6480464 Benzo(a)pyrene affects the methylation of CCDC169 promoter CTD PMID:27901495 Ccdc169 Rat benzo[a]pyrene increases methylation ISO Ccdc169 (Mus musculus) 6480464 Benzo(a)pyrene results in increased methylation of CCDC169 intron CTD PMID:27901495 Ccdc169 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of CCDC169 mRNA CTD PMID:25181051 Ccdc169 Rat bisphenol A increases methylation EXP 6480464 bisphenol A results in increased methylation of CCDC169 gene CTD PMID:28505145 Ccdc169 Rat cadmium atom multiple interactions ISO Ccdc169 (Mus musculus) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CCDC169 more ... CTD PMID:37236586 Ccdc169 Rat cadmium dichloride decreases expression ISO CCDC169 (Homo sapiens) 6480464 Cadmium Chloride results in decreased expression of CCDC169 mRNA CTD PMID:38382870 Ccdc169 Rat cadmium dichloride multiple interactions ISO Ccdc169 (Mus musculus) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CCDC169 more ... CTD PMID:37236586 Ccdc169 Rat D-glucose multiple interactions ISO Ccdc169 (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] more ... CTD PMID:37567420 Ccdc169 Rat D-glucose increases expression ISO Ccdc169 (Mus musculus) 6480464 Glucose results in increased expression of CCDC169 mRNA CTD PMID:39922521 Ccdc169 Rat dorsomorphin multiple interactions ISO CCDC169 (Homo sapiens) 6480464 [NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ... CTD PMID:27188386 Ccdc169 Rat fructose multiple interactions ISO Ccdc169 (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] more ... CTD PMID:37567420 Ccdc169 Rat glucose multiple interactions ISO Ccdc169 (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] more ... CTD PMID:37567420 Ccdc169 Rat glucose increases expression ISO Ccdc169 (Mus musculus) 6480464 Glucose results in increased expression of CCDC169 mRNA CTD PMID:39922521 Ccdc169 Rat methylmercury chloride decreases expression ISO CCDC169 (Homo sapiens) 6480464 methylmercuric chloride results in decreased expression of CCDC169 mRNA CTD PMID:23179753 Ccdc169 Rat methylmercury chloride multiple interactions ISO CCDC169 (Homo sapiens) 6480464 [NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ... CTD PMID:27188386 Ccdc169 Rat methylmercury chloride increases expression ISO CCDC169 (Homo sapiens) 6480464 methylmercuric chloride results in increased expression of CCDC169 mRNA CTD PMID:23179753|PMID:26272509|PMID:28001369 Ccdc169 Rat nickel sulfate decreases expression ISO CCDC169 (Homo sapiens) 6480464 nickel sulfate results in decreased expression of CCDC169 mRNA CTD PMID:22714537 Ccdc169 Rat propanal increases expression ISO CCDC169 (Homo sapiens) 6480464 propionaldehyde results in increased expression of CCDC169 mRNA CTD PMID:26079696 Ccdc169 Rat rotenone increases expression ISO CCDC169 (Homo sapiens) 6480464 Rotenone results in increased expression of CCDC169 mRNA CTD PMID:29955902 Ccdc169 Rat SB 431542 multiple interactions ISO CCDC169 (Homo sapiens) 6480464 [NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ... CTD PMID:27188386 Ccdc169 Rat sodium arsenite decreases expression ISO CCDC169 (Homo sapiens) 6480464 sodium arsenite results in decreased expression of CCDC169 mRNA CTD PMID:38568856 Ccdc169 Rat sunitinib decreases expression ISO CCDC169 (Homo sapiens) 6480464 Sunitinib results in decreased expression of CCDC169 mRNA CTD PMID:31533062 Ccdc169 Rat trichloroethene decreases expression EXP 6480464 Trichloroethylene results in decreased expression of CCDC169 mRNA CTD PMID:33387578 Ccdc169 Rat valproic acid increases expression ISO CCDC169 (Homo sapiens) 6480464 Valproic Acid results in increased expression of CCDC169 mRNA CTD PMID:24383497|PMID:28001369
References
Genomics
Comparative Map Data
Ccdc169 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 141,471,762 - 141,501,325 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 2 141,471,810 - 141,501,325 (+) Ensembl GRCr8 mRatBN7.2 2 139,321,644 - 139,351,161 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 139,321,670 - 139,351,161 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 2 145,896,509 - 145,926,017 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 144,007,946 - 144,037,450 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 138,640,379 - 138,669,883 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 144,551,382 - 144,581,044 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 144,551,390 - 144,581,044 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 2 163,967,594 - 163,996,902 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 2 144,364,672 - 144,394,530 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 2 133,805,483 - 133,835,099 (+) NCBI Celera Cytogenetic Map 2 q26 NCBI
CCDC169 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 13 36,222,004 - 36,297,814 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 13 36,222,008 - 36,297,840 (-) Ensembl hg38 GRCh38 GRCh37 13 36,796,141 - 36,871,951 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 13 35,699,176 - 35,769,948 (-) NCBI Build 36 Build 36 hg18 NCBI36 Celera 13 17,868,356 - 17,939,180 (-) NCBI Celera Cytogenetic Map 13 q13.3 NCBI HuRef 13 17,613,147 - 17,683,874 (-) NCBI HuRef CHM1_1 13 36,768,752 - 36,839,475 (-) NCBI CHM1_1 T2T-CHM13v2.0 13 35,441,522 - 35,517,321 (-) NCBI T2T-CHM13v2.0
Ccdc169 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 3 55,044,760 - 55,082,671 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 3 55,044,760 - 55,080,356 (+) Ensembl GRCm39 Ensembl GRCm39 GRCm38 3 55,137,339 - 55,175,250 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 3 55,137,339 - 55,172,935 (+) Ensembl mm10 GRCm38 MGSCv37 3 54,943,960 - 54,976,857 (+) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 3 55,225,268 - 55,260,831 (+) NCBI MGSCv36 mm8 Celera 3 54,857,817 - 54,890,721 (+) NCBI Celera Cytogenetic Map 3 C NCBI cM Map 3 26.53 NCBI
Ccdc169 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955431 9,794,447 - 9,856,653 (+) Ensembl ChiLan1.0 NW_004955431 9,794,294 - 9,852,944 (+) NCBI ChiLan1.0 ChiLan1.0
CCDC169 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 14 35,726,136 - 35,822,067 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 13 26,832,139 - 26,928,069 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 13 17,433,136 - 17,509,554 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 13 35,870,161 - 35,940,777 (-) NCBI PanPan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 13 35,870,170 - 35,940,777 (-) Ensembl panPan2 panpan1.1
CCDC169 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 25 4,290,543 - 4,334,981 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 25 4,324,096 - 4,367,105 (+) NCBI Dog10K_Boxer_Tasha Dog10K_Boxer_Tasha ROS_Cfam_1.0 25 4,391,994 - 4,436,493 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 UMICH_Zoey_3.1 25 4,299,360 - 4,343,851 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 25 4,296,130 - 4,339,155 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 25 4,360,313 - 4,403,394 (+) NCBI UU_Cfam_GSD_1.0 UU_Cfam_GSD_1.0
Ccdc169 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404945 165,489,818 - 165,536,454 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936472 30,413,605 - 30,462,330 (-) Ensembl SpeTri2.0 Ensembl SpeTri2.0 NW_004936472 30,413,870 - 30,462,309 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
CCDC169
CCDC169
Ccdc169
Ccdc169
miRNA Target Status (No longer updated)
Predicted Target Of
Count of predictions: 412 Count of miRNA genes: 222 Interacting mature miRNAs: 278 Transcripts: ENSRNOT00000019018 Prediction methods: Microtar, Miranda, Targetscan Result types: miRGate_prediction 
