Endou (endonuclease, poly(U)-specific) - Rat Genome Database

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Gene: Endou (endonuclease, poly(U)-specific) Rattus norvegicus
Analyze
Symbol: Endou
Name: endonuclease, poly(U)-specific
RGD ID: 1593011
Description: Predicted to enable RNA binding activity; RNA endonuclease activity; and serine-type peptidase activity. Predicted to be involved in female pregnancy; negative regulation of metabolic process; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ENDOU (endonuclease, poly(U) specific); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC680317; placental protein 11 related; poly(U)-specific endoribonuclease; Pp11r; similar to placental protein 11 related; uridylate-specific endoribonuclease
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87130,723,972 - 130,745,672 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7130,723,972 - 130,745,672 (-)EnsemblGRCr8
mRatBN7.27128,844,872 - 128,866,572 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7128,844,862 - 128,866,596 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7130,642,925 - 130,663,622 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07132,868,461 - 132,889,158 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07132,780,920 - 132,801,626 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07139,202,342 - 139,223,022 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,201,054 - 139,223,116 (-)Ensemblrn6Rnor6.0
Rnor_5.07139,393,949 - 139,414,672 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47136,423,018 - 136,443,640 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7125,337,357 - 125,358,109 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2350438   PMID:6755403   PMID:18936097  


Genomics

Comparative Map Data
Endou
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87130,723,972 - 130,745,672 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7130,723,972 - 130,745,672 (-)EnsemblGRCr8
mRatBN7.27128,844,872 - 128,866,572 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7128,844,862 - 128,866,596 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7130,642,925 - 130,663,622 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07132,868,461 - 132,889,158 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07132,780,920 - 132,801,626 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07139,202,342 - 139,223,022 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,201,054 - 139,223,116 (-)Ensemblrn6Rnor6.0
Rnor_5.07139,393,949 - 139,414,672 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47136,423,018 - 136,443,640 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7125,337,357 - 125,358,109 (-)NCBICelera
Cytogenetic Map7q36NCBI
ENDOU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,709,734 - 47,725,490 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,709,734 - 47,725,567 (-)Ensemblhg38GRCh38
GRCh371248,103,517 - 48,119,273 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,389,795 - 46,405,617 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1246,900,985 - 46,916,824 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1245,134,616 - 45,150,455 (-)NCBIHuRef
CHM1_11248,069,425 - 48,085,261 (-)NCBICHM1_1
T2T-CHM13v2.01247,671,053 - 47,686,808 (-)NCBIT2T-CHM13v2.0
Endou
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391597,608,896 - 97,629,286 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1597,608,896 - 97,629,220 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381597,711,015 - 97,731,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1597,711,015 - 97,731,339 (-)Ensemblmm10GRCm38
MGSCv371597,541,450 - 97,561,836 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361597,539,053 - 97,549,184 (-)NCBIMGSCv36mm8
Celera1599,839,086 - 99,859,430 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1553.7NCBI
Endou
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555006,632,743 - 6,646,657 (-)Ensembl
ChiLan1.0NW_0049555006,631,749 - 6,653,457 (-)NCBIChiLan1.0ChiLan1.0
ENDOU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21046,442,149 - 46,461,995 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11246,438,904 - 46,455,441 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01241,003,037 - 41,024,127 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11241,882,397 - 41,898,189 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1241,882,483 - 41,897,119 (+)EnsemblpanPan2panpan1.1
ENDOU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1277,025,752 - 7,044,499 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl277,028,263 - 7,043,475 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2739,264,472 - 39,285,264 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0277,089,458 - 7,111,515 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl277,095,266 - 7,112,880 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1277,026,214 - 7,048,208 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0277,061,761 - 7,083,534 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02739,551,602 - 39,573,616 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
ENDOU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl578,072,063 - 78,089,680 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1578,072,062 - 78,090,301 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ENDOU
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11143,930,671 - 43,946,795 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1143,930,687 - 43,941,205 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037202,436,176 - 202,451,262 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Endou
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248164,526,487 - 4,541,794 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248164,526,136 - 4,542,530 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Endou
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11270,528,620 - 270,548,283 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Endou
47 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:96
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000009416
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 120 74 73 42 47 42 6 288 147 11 94 75 87 31 4 4

Sequence


Ensembl Acc Id: ENSRNOT00000086559   ⟹   ENSRNOP00000073287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,723,972 - 130,745,672 (-)Ensembl
mRatBN7.2 Ensembl7128,844,862 - 128,866,596 (-)Ensembl
Rnor_6.0 Ensembl7139,201,054 - 139,223,116 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121295   ⟹   ENSRNOP00000106574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,723,972 - 130,744,680 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000124947   ⟹   ENSRNOP00000099832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,723,972 - 130,741,059 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000144366   ⟹   ENSRNOP00000099123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,723,972 - 130,744,352 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000145738   ⟹   ENSRNOP00000100427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,723,972 - 130,734,355 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157634   ⟹   ENSRNOP00000102624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,723,972 - 130,737,075 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000169266   ⟹   ENSRNOP00000106142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,723,972 - 130,741,348 (-)Ensembl
RefSeq Acc Id: NM_001191069   ⟹   NP_001177998
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,723,972 - 130,745,672 (-)NCBI
mRatBN7.27128,844,872 - 128,866,572 (-)NCBI
Rnor_6.07139,202,342 - 139,223,022 (-)NCBI
Rnor_5.07139,393,949 - 139,414,672 (-)NCBI
Celera7125,337,357 - 125,358,109 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001177998 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073287
  ENSRNOP00000073287.1
  ENSRNOP00000099123.1
  ENSRNOP00000099832.1
  ENSRNOP00000100427.1
  ENSRNOP00000102624.1
  ENSRNOP00000106142.1
  ENSRNOP00000106574.1
RefSeq Acc Id: NP_001177998   ⟸   NM_001191069
- Peptide Label: precursor
- UniProtKB: D3ZSZ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073287   ⟸   ENSRNOT00000086559
Ensembl Acc Id: ENSRNOP00000099123   ⟸   ENSRNOT00000144366
Ensembl Acc Id: ENSRNOP00000100427   ⟸   ENSRNOT00000145738
Ensembl Acc Id: ENSRNOP00000106142   ⟸   ENSRNOT00000169266
Ensembl Acc Id: ENSRNOP00000099832   ⟸   ENSRNOT00000124947
Ensembl Acc Id: ENSRNOP00000106574   ⟸   ENSRNOT00000121295
Ensembl Acc Id: ENSRNOP00000102624   ⟸   ENSRNOT00000157634
Protein Domains
EndoU   SMB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSZ1-F1-model_v2 AlphaFold D3ZSZ1 1-411 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695615
Promoter ID:EPDNEW_R6140
Type:single initiation site
Name:Endou_1
Description:endonuclease, poly-specific
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07139,223,093 - 139,223,153EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593011 AgrOrtholog
BioCyc Gene G2FUF-32186 BioCyc
Ensembl Genes ENSRNOG00000056446 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000086559 ENTREZGENE
  ENSRNOT00000086559.3 UniProtKB/TrEMBL
  ENSRNOT00000121295.1 UniProtKB/TrEMBL
  ENSRNOT00000124947.1 UniProtKB/TrEMBL
  ENSRNOT00000144366.1 UniProtKB/TrEMBL
  ENSRNOT00000145738.1 UniProtKB/TrEMBL
  ENSRNOT00000157634.1 UniProtKB/TrEMBL
  ENSRNOT00000169266.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.410.20 UniProtKB/TrEMBL
InterPro Endoribonuclease_XendoU UniProtKB/TrEMBL
  ENDOU UniProtKB/TrEMBL
  EndoU-like UniProtKB/TrEMBL
  Somatomedin_B UniProtKB/TrEMBL
  Somatomedin_B-like_dom UniProtKB/TrEMBL
  Somatomedin_B_chordata UniProtKB/TrEMBL
KEGG Report rno:680317 UniProtKB/TrEMBL
NCBI Gene 680317 ENTREZGENE
PANTHER POLY(U)-SPECIFIC ENDORIBONUCLEASE UniProtKB/TrEMBL
  PTHR12439 UniProtKB/TrEMBL
Pfam Somatomedin_B UniProtKB/TrEMBL
  XendoU UniProtKB/TrEMBL
PhenoGen Endou PhenoGen
PRINTS SOMATOMEDINB UniProtKB/TrEMBL
PROSITE ENDOU UniProtKB/TrEMBL
  SMB_1 UniProtKB/TrEMBL
  SMB_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056446 RatGTEx
SMART SM00201 UniProtKB/TrEMBL
Superfamily-SCOP SSF142877 UniProtKB/TrEMBL
  SSF90188 UniProtKB/TrEMBL
UniProt A0ABK0KXC2_RAT UniProtKB/TrEMBL
  A0ABK0L709_RAT UniProtKB/TrEMBL
  A0ABK0L875_RAT UniProtKB/TrEMBL
  A0ABK0LLD4_RAT UniProtKB/TrEMBL
  A0ABK0LMN6_RAT UniProtKB/TrEMBL
  A0ABK0LWL3_RAT UniProtKB/TrEMBL
  D3ZSZ1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-02-18 Endou  endonuclease, poly(U)-specific   Pp11r  placental protein 11 related  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Pp11r  placental protein 11 related  LOC680317  similar to placental protein 11 related  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680317  similar to placental protein 11 related      Symbol and Name status set to provisional 70820 PROVISIONAL