Tceal9 (transcription elongation factor A like 9)

Gene: Tceal9 (transcription elongation factor A like 9) Rattus norvegicus

Analyze

Symbol:

Tceal9

Name:

transcription elongation factor A like 9

RGD ID:

1592975

Description:

Predicted to enable WW domain binding activity. Orthologous to human TCEAL9 (transcription elongation factor A like 9); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-acetamidofluorene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC680354; MGC188857; RGD1560111; similar to WW domain binding protein 5; transcription elongation factor A protein-like 9; Wbp5; WW domain binding protein 5; WW domain-binding protein 5

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	104,037,274 - 104,039,345 (+)	NCBI		GRCr8
mRatBN7.2	X	99,245,645 - 99,247,720 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	99,228,458 - 99,247,763 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	101,375,072 - 101,377,143 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	104,885,679 - 104,887,750 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	102,442,727 - 102,444,798 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	106,791,333 - 106,794,667 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	106,791,333 - 106,794,657 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	106,336,493 - 106,338,637 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	123,554,560 - 123,556,844 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	99,898,412 - 99,900,388 (-)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

Pelizaeus-Merzbacher disease (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-acetamidofluorene (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (EXP)

antimycin A (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

choline (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

gemcitabine (ISO)

gentamycin (EXP)

glafenine (EXP)

indole-3-methanol (EXP)

inulin (ISO)

isobutanol (ISO)

L-methionine (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (EXP,ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

p-toluidine (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

tungsten (ISO)

valproic acid (ISO)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9171351	PMID:12477932

Genomics

Comparative Map Data

Tceal9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	104,037,274 - 104,039,345 (+)	NCBI		GRCr8
mRatBN7.2	X	99,245,645 - 99,247,720 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	99,228,458 - 99,247,763 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	101,375,072 - 101,377,143 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	104,885,679 - 104,887,750 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	102,442,727 - 102,444,798 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	106,791,333 - 106,794,667 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	106,791,333 - 106,794,657 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	106,336,493 - 106,338,637 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	123,554,560 - 123,556,844 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	99,898,412 - 99,900,388 (-)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

TCEAL9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	103,356,506 - 103,358,462 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	103,356,489 - 103,358,462 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	102,611,434 - 102,613,390 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	102,498,036 - 102,500,053 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	102,417,524 - 102,419,540	NCBI
Celera	X	103,050,382 - 103,052,399 (+)	NCBI		Celera
Cytogenetic Map	X	q22.2	NCBI
HuRef	X	92,274,289 - 92,276,306 (+)	NCBI		HuRef
CHM1_1	X	102,504,370 - 102,506,387 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	101,803,512 - 101,805,468 (+)	NCBI		T2T-CHM13v2.0

Tceal9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	135,145,829 - 135,147,888 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	135,145,828 - 135,147,888 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	136,245,080 - 136,247,139 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	136,245,079 - 136,247,139 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	132,779,619 - 132,781,678 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	131,591,489 - 131,593,492 (+)	NCBI		MGSCv36	mm8
MGSCv36	X	115,618,169 - 115,620,107 (+)	NCBI		MGSCv36	mm8
Celera	X	119,561,572 - 119,563,882 (+)	NCBI		Celera
Cytogenetic Map	X	F1	NCBI
cM Map	X	57.53	NCBI

Tceal9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955548	505,592 - 507,360 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955548	505,524 - 507,210 (+)	NCBI	ChiLan1.0	ChiLan1.0

TCEAL9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	102,969,341 - 102,971,313 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	102,972,936 - 102,974,918 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	92,586,692 - 92,588,678 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	102,965,282 - 102,967,281 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	102,966,500 - 102,966,814 (+)	Ensembl	panpan1.1		panPan2

TCEAL9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	76,728,984 - 76,729,303 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	76,728,990 - 76,729,303 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	62,957,479 - 62,957,848 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	78,347,356 - 78,347,727 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	75,824,687 - 75,825,056 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	77,516,547 - 77,516,916 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	77,278,464 - 77,278,833 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101972486
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	61,546,850 - 61,549,022 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936547	7,867,398 - 7,869,414 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCEAL9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	84,277,034 - 84,279,367 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	84,276,985 - 84,279,377 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	98,065,178 - 98,067,415 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCEAL9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	91,262,159 - 91,264,154 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	91,263,369 - 91,263,686 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	16,119,437 - 16,121,637 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tceal9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624954	498,649 - 500,353 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624954	498,031 - 500,335 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tceal9
6 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	331
Count of miRNA genes:	195
Interacting mature miRNAs:	220
Transcripts:	ENSRNOT00000050302
Prediction methods:	Microtar, Miranda, Pita, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	41304447	112935181	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	65612192	120568734	Rat
724551	Glom1	Glomerulus QTL 1	2.8	0.0004	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	X	75294106	120294106	Rat

Markers in Region

RH140123

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	X	106,336,856 - 106,337,075	NCBI	Rnor5.0
Rnor_5.0	11	49,208,193 - 49,208,412	NCBI	Rnor5.0
Rnor_5.0	11	49,909,565 - 49,909,784	NCBI	Rnor5.0
RGSC_v3.4	X	123,556,271 - 123,556,489	UniSTS	RGSC3.4
RGSC_v3.4	11	44,667,989 - 44,668,207	UniSTS	RGSC3.4
Celera	X	99,898,767 - 99,898,985	UniSTS
Celera	11	43,500,005 - 43,500,223	UniSTS
Cytogenetic Map	11	q12	UniSTS
Cytogenetic Map	X	q35	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	52	36	19	36	8	10	74	35	41	11	8
Low			5	5		5		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000050302 ⟹ ENSRNOP00000050036

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	99,245,684 - 99,247,763 (+)	Ensembl
Rnor_6.0 Ensembl	X	106,791,333 - 106,794,657 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110789 ⟹ ENSRNOP00000079799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	99,228,458 - 99,247,712 (+)	Ensembl

RefSeq Acc Id:

NM_001127502 ⟹ NP_001120974

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	104,037,274 - 104,039,345 (+)	NCBI
mRatBN7.2	X	99,245,649 - 99,247,720 (+)	NCBI
Rnor_6.0	X	106,791,333 - 106,794,660 (+)	NCBI
Rnor_5.0	X	106,336,493 - 106,338,637 (-)	NCBI
RGSC_v3.4	X	123,554,560 - 123,556,844 (+)	RGD
Celera	X	99,898,412 - 99,900,388 (-)	RGD

Sequence:

show sequence

ACTGGTGACGTAGATCTCATGTGACCAGGAGTCGACGTGTGCAGAAATCCTGCTAGTCTGGTCC
TTGTTTCCATCTGGGTACCAGCTCCCTTCAGCCTTGCAGGCGGTGGTGTGAGAGGCCAGCGGCA
AGAGGAGAAAGCTTGCTTGAATTCAGCAGGTTTGTTTTTTGTACCGCTCCAGCCTAAAATAAGT
AGGAAAAAGAGATCGACCAGATCCGTACCTGGGAGCCGCAAAGAAGGAAGAGAAGCATACACAA
GATGAAACCCTGCCAAAAAATGGAAGGAAACCTAGAAAAGGAGAATGAGCCAAAGCCTGAGGAA
GAGCCAAAGCCTGAGGAGAAGCCAGAGGAGGGGGAGGAACCAGACGAGGAGGAAAAATCAGAAG
AAACTTTTCGGGAGAGGCTGATTCAGTCTCTTCAGGATTTTAAGGAGGATATACACAACAGGCA
TCTGAGCAGTGAAGATATGTTTAGAGACGTGGATGAGCTAGATGAGATCAGGAGAGTGAGAAAC
AAACTAATAGTGATGCGTTGGAAGGCCAATCGAAGCCATCCTTACCCCTATTTAATGTAGCTTG
GCTTGGTTTCCTTTTTATCTGCTGTTACCATTGCAATCTAGCTTTCTTTTGATTAGCATTTTCC
TGCTAAGACCTTTGCCCATCTTCCTGCGTTGAATCTGTTGCTGTTAGTGGCTTTAGCGATCTCT
CTTGTTGTCTGTATCTTACTGTTGATTGTATTTGAACCAATCTATAAGTCTCTGGCTTTTAACC
GAAGAGCTTTACTGATTTGTAAAAAAAAAAATACAAACATGAGCTTCTGATGGGAAACAAAATG
AGAAAAGATTACAAAATAATATGGGAATATCATATTTTGAGAGACAGGAGTCCCTTTGTATGTT
ACATATATGCACATATAAACTTGTGAAAGATGAATGATTTTTCTTCTGCTTATTTGTATTTGCC
ATATTCCTAAAATGAACACGCATTATTCTTGCTAAAAATAATAAAGGTTTTATAACCAAAAAAA
AAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006257281 ⟹ XP_006257343

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	104,037,302 - 104,039,337 (+)	NCBI
mRatBN7.2	X	99,245,645 - 99,247,715 (+)	NCBI
Rnor_6.0	X	106,791,340 - 106,794,667 (+)	NCBI
Rnor_5.0	X	106,336,493 - 106,338,637 (-)	NCBI

Sequence:

show sequence

ACGTAGATCTCATGTGACCAGGAGTCGACGTGTGCAGAAATCCTGCTAGTCTGGTCCTTGTTTC
CATCTGGGTACCAGCTCCCTTCAGCCTTGCAGGCGGTGGTGTGAGAGGCCAGCGGCAAGAGGAG
ACAGCTTGCTTGAATTCAGCAGGTTTGTTTTTTGTACCGCTCCAGCCTAAAATAAGTAGGAAAA
AGAGATCGACCAGATCCGTACCTGTGTCCTCCTTGCTTCCTAGAAATAATTGCATTCCCATATT
CGGCAGGGAGCCGCAAAGAAGGAAGAGAAGCATACACAAGATGAAACCCTGCCAAAAAATGGAA
GGAAACCTAGAAAAGGAGAATGAGCCAAAGCCTGAGGAAGAGCCAAAGCCTGAGGAGAAGCCAG
AGGAGGGGGAGGAACCAGACGAGGAGGAAAAATCAGAAGAAACTTTTCGGGAGAGGCTGATTCA
GTCTCTTCAGGATTTTAAGGAGGATATACACAACAGGCATCTGAGCAGTGAAGATATGTTTAGA
GACGTGGATGAGCTAGATGAGATCAGGAGAGTGAGAAACAAACTAATAGTGATGCGTTGGAAGG
CCAATCGAAGCCATCCTTACCCCTATTTAATGTAGCTTGGCTTGGTTTCCTTTTTATCTGCTGT
TACCATTGCAATCTAGCTTTCTTTTGATTAGCATTTTCCTGCTAAGACCTTTGCCCATCTTCCT
GCGTTGAATCTGTTGCTGTTAGTGGCTTTAGCGATCTCTCTTGTTGTCTGTATCTTACTGTTGA
TTGTATTTGAACCAATCTATAAGTCTCTGGCTTTTAACCGAAGAGCTTTACTGATTTGTAAAAA
AAAAAATACAAACATGAGCTTCTGATGGGAAACAAAATGAGAAAAGATTACAAAATAATATGGG
AATATCATATTTTGAGAGACAGGAGTCCCTTTGTATGTTACATATATGCACATATAAACTTGTG
AAAGATGAATGATTTTTCTTCTGCTTATTTGTATTTGCCATATTCCTAAAATGAACACGCATTA
TTCTTGCTAAAAATAATAAAGGTTTTATAACTAAAAAG

hide sequence

RefSeq Acc Id:

XM_008773438 ⟹ XP_008771660

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	104,037,302 - 104,039,337 (+)	NCBI
mRatBN7.2	X	99,245,645 - 99,247,715 (+)	NCBI
Rnor_6.0	X	106,791,340 - 106,794,667 (+)	NCBI

Sequence:

show sequence

ACGTAGATCTCATGTGACCAGGAGTCGACGTGTGCAGAAATCCTGCTAGTCTGGTCCTTGTTTC
CATCTGGGTACCAGCTCCCTTCAGCCTTGCAGGCGGTGGTGTGAGAGGCCAGCGGCAAGAGGAG
ACAGCTTGCTTGAATTCAGCAGGTTTGTTTTTTGTACCGCTCCAGCCTAAAATAAGTAGGAAAA
AGAGATCGACCAGATCCGTACCTGAAATAATTGCATTCCCATATTCGGCAGGGAGCCGCAAAGA
AGGAAGAGAAGCATACACAAGATGAAACCCTGCCAAAAAATGGAAGGAAACCTAGAAAAGGAGA
ATGAGCCAAAGCCTGAGGAAGAGCCAAAGCCTGAGGAGAAGCCAGAGGAGGGGGAGGAACCAGA
CGAGGAGGAAAAATCAGAAGAAACTTTTCGGGAGAGGCTGATTCAGTCTCTTCAGGATTTTAAG
GAGGATATACACAACAGGCATCTGAGCAGTGAAGATATGTTTAGAGACGTGGATGAGCTAGATG
AGATCAGGAGAGTGAGAAACAAACTAATAGTGATGCGTTGGAAGGCCAATCGAAGCCATCCTTA
CCCCTATTTAATGTAGCTTGGCTTGGTTTCCTTTTTATCTGCTGTTACCATTGCAATCTAGCTT
TCTTTTGATTAGCATTTTCCTGCTAAGACCTTTGCCCATCTTCCTGCGTTGAATCTGTTGCTGT
TAGTGGCTTTAGCGATCTCTCTTGTTGTCTGTATCTTACTGTTGATTGTATTTGAACCAATCTA
TAAGTCTCTGGCTTTTAACCGAAGAGCTTTACTGATTTGTAAAAAAAAAAATACAAACATGAGC
TTCTGATGGGAAACAAAATGAGAAAAGATTACAAAATAATATGGGAATATCATATTTTGAGAGA
CAGGAGTCCCTTTGTATGTTACATATATGCACATATAAACTTGTGAAAGATGAATGATTTTTCT
TCTGCTTATTTGTATTTGCCATATTCCTAAAATGAACACGCATTATTCTTGCTAAAAATAATAA
AGGTTTTATAACTAAAAAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001120974	(Get FASTA)	NCBI Sequence Viewer
	XP_006257343	(Get FASTA)	NCBI Sequence Viewer
	XP_008771660	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66897	(Get FASTA)	NCBI Sequence Viewer
	EDL85804	(Get FASTA)	NCBI Sequence Viewer
	EDL85805	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050036
	ENSRNOP00000050036.3
	ENSRNOP00000079799.1

RefSeq Acc Id:	NP_001120974 ⟸ NM_001127502
- UniProtKB:	B2RYT6 (UniProtKB/TrEMBL), A0A8I5ZNB4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKPCQKMEGNLEKENEPKPEEEPKPEEKPEEGEEPDEEEKSEETFRERLIQSLQDFKEDIHNRH LSSEDMFRDVDELDEIRRVRNKLIVMRWKANRSHPYPYLM hide sequence

RefSeq Acc Id:	XP_006257343 ⟸ XM_006257281
- Peptide Label:	isoform X1
- UniProtKB:	B2RYT6 (UniProtKB/TrEMBL), A0A8I5ZNB4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKPCQKMEGNLEKENEPKPEEEPKPEEKPEEGEEPDEEEKSEETFRERLIQSLQDFKEDIHNRH LSSEDMFRDVDELDEIRRVRNKLIVMRWKANRSHPYPYLM hide sequence

RefSeq Acc Id:	XP_008771660 ⟸ XM_008773438
- Peptide Label:	isoform X1
- UniProtKB:	B2RYT6 (UniProtKB/TrEMBL), A0A8I5ZNB4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKPCQKMEGNLEKENEPKPEEEPKPEEKPEEGEEPDEEEKSEETFRERLIQSLQDFKEDIHNRH LSSEDMFRDVDELDEIRRVRNKLIVMRWKANRSHPYPYLM hide sequence

RefSeq Acc Id:

ENSRNOP00000050036 ⟸ ENSRNOT00000050302

RefSeq Acc Id:

ENSRNOP00000079799 ⟸ ENSRNOT00000110789

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RYT6-F1-model_v2	AlphaFold	B2RYT6	1-104	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701942

Promoter ID:

EPDNEW_R12466

Type:

initiation region

Name:

Tceal9_1

Description:

transcription elongation factor A like 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	106,791,387 - 106,791,447	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1592975	AgrOrtholog
BioCyc Gene	G2FUF-1629	BioCyc
Ensembl Genes	ENSRNOG00000034198	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000050302	ENTREZGENE
	ENSRNOT00000050302.5	UniProtKB/TrEMBL
	ENSRNOT00000110789.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6921863	IMAGE-MGC_LOAD
InterPro	TF_A-like/BEX-like	UniProtKB/TrEMBL
KEGG Report	rno:680354	UniProtKB/TrEMBL
MGC_CLONE	MGC:188857	IMAGE-MGC_LOAD
NCBI Gene	680354	ENTREZGENE
Pfam	BEX	UniProtKB/TrEMBL
PhenoGen	Tceal9	PhenoGen
RatGTEx	ENSRNOG00000034198	RatGTEx
UniProt	A0A8I5ZNB4	ENTREZGENE, UniProtKB/TrEMBL
	B2RYT6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-19	Tceal9	transcription elongation factor A like 9	Wbp5	WW domain binding protein 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Wbp5	WW domain binding protein 5	LOC680354	similar to WW domain binding protein 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC680354	similar to WW domain binding protein 5			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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