Pcdhgb2 (protocadherin gamma subfamily B, 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Pcdhgb2 (protocadherin gamma subfamily B, 2) Rattus norvegicus
Analyze
Symbol: Pcdhgb2
Name: protocadherin gamma subfamily B, 2
RGD ID: 1592968
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC680361; similar to protocadherin gamma subfamily B, 2
Latest Assembly: GRCr8 - GRCr8 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_5.01830,530,452 - 30,533,046 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41830,596,481 - 30,598,943 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1829,161,702 - 29,164,447 (+)NCBICelera
Cytogenetic Map18p11NCBI



References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_002725317   ⟹   XP_002725363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1829,161,702 - 29,164,447 (+)NCBI
RefSeq Acc Id: XM_574133   ⟹   XP_574133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.41830,596,481 - 30,598,943 (+)RGD
RefSeq Acc Id: XR_361321
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01830,530,452 - 30,533,046 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001419416 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_002725363   ⟸   XM_002725317
RefSeq Acc Id: XP_574133   ⟸   XM_574133
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
  Cadherin_CBD UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
  Protocadherin/Cadherin-CA UniProtKB/TrEMBL
NCBI Gene 680361 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PROTOCADHERIN GAMMA-B2 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
  Cadherin_C_2 UniProtKB/TrEMBL
  Cadherin_tail UniProtKB/TrEMBL
PhenoGen Pcdhgb2 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin-like UniProtKB/TrEMBL
UniProt A6J391 ENTREZGENE, UniProtKB/TrEMBL
  A6J392 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-07-30 Pcdhgb2  protocadherin gamma subfamily B, 2  Pcdhgb2  protocadherin gamma subfamily B, 2  Type changed (type changed from [pseudo] to [protein-coding]) 629549 APPROVED
2008-03-05 Pcdhgb2  protocadherin gamma subfamily B, 2  LOC680361  similar to protocadherin gamma subfamily B, 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680361  similar to protocadherin gamma subfamily B, 2      Symbol and Name status set to provisional 70820 PROVISIONAL