Rpl36al-ps4 (ribosomal protein L36A, pseudogene 4) - Rat Genome Database

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Gene: Rpl36al-ps4 (ribosomal protein L36A, pseudogene 4) Rattus norvegicus
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Symbol: Rpl36al-ps4
Name: ribosomal protein L36A, pseudogene 4
RGD ID: 1592934
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC680395; ribosomal protein L36a-like2; Rpl36a-ps4; Rpl36al2; similar to large subunit ribosomal protein L36a
Related Functional Gene: Rpl36a  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8159,637,473 - 9,637,876 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.2157,206,655 - 7,207,058 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx159,343,974 - 9,344,377 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01510,256,750 - 10,257,153 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0158,557,187 - 8,557,590 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0157,877,702 - 7,878,105 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01511,945,064 - 11,945,384 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4158,777,216 - 8,777,536 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera157,262,795 - 7,263,198 (+)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics

Variants

.
Variants in Rpl36al-ps4
3 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
1300142Bp191Blood pressure QTL 1913.14arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)15115177511Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_001053887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4158,777,216 - 8,777,536 (+)RGD

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14471 BioCyc
NCBI Gene 680395 ENTREZGENE
PhenoGen Rpl36al-ps4 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-07 Rpl36al-ps4  ribosomal protein L36A, pseudogene 4  Rpl36a-ps4  ribosomal protein L36a, pseudogene 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Rpl36a-ps4  ribosomal protein L36a, pseudogene 4  LOC100364953  ribosomal protein L36a-like  Data merged from RGD:2320013 1643240 APPROVED
2011-06-09 Rpl36a-ps4  ribosomal protein L36a, pseudogene 4  Rpl36al2  ribosomal protein L36a-like2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100364953  ribosomal protein L36a-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-04-21 Rpl36al2  ribosomal protein L36a-like2  LOC680395  similar to large subunit ribosomal protein L36a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC680395  similar to large subunit ribosomal protein L36a  LOC682278  similar to large subunit ribosomal protein L36a  Data merged from RGD:1585715 1643240 APPROVED
2006-11-20 LOC680395  similar to large subunit ribosomal protein L36a      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682278  similar to large subunit ribosomal protein L36a      Symbol and Name status set to provisional 70820 PROVISIONAL