Cimip4 (ciliary microtubule inner protein 4) - Rat Genome Database

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Gene: Cimip4 (ciliary microtubule inner protein 4) Rattus norvegicus
Analyze
Symbol: Cimip4
Name: ciliary microtubule inner protein 4
RGD ID: 1592508
Description: Predicted to be located in sperm flagellum. Orthologous to human CIMIP4 (ciliary microtubule inner protein 4); INTERACTS WITH bisphenol A; methoxychlor; 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC686841; LOC686841; similar to Protein EAN57; testis expressed 33; testis-expressed protein 33; Tex33; uncharacterized protein LOC686841
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,808,669 - 111,825,522 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7111,808,670 - 111,825,412 (-)EnsemblGRCr8
mRatBN7.27109,928,165 - 109,944,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,928,173 - 109,947,072 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7111,677,816 - 111,694,547 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,901,349 - 113,918,080 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,869,965 - 113,886,792 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,598,061 - 119,613,175 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07119,588,352 - 119,603,850 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera7106,266,605 - 106,282,947 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
sperm flagellum  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:31904090  


Genomics

Comparative Map Data
Cimip4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,808,669 - 111,825,522 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7111,808,670 - 111,825,412 (-)EnsemblGRCr8
mRatBN7.27109,928,165 - 109,944,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,928,173 - 109,947,072 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7111,677,816 - 111,694,547 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,901,349 - 113,918,080 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,869,965 - 113,886,792 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,598,061 - 119,613,175 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07119,588,352 - 119,603,850 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera7106,266,605 - 106,282,947 (-)NCBICelera
Cytogenetic Map7q34NCBI
CIMIP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,991,125 - 37,007,851 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,991,120 - 37,007,851 (-)Ensemblhg38GRCh38
GRCh372237,387,166 - 37,403,892 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,717,117 - 35,733,785 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2221,188,499 - 21,205,213 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,352,225 - 20,369,005 (-)NCBIHuRef
CHM1_12237,346,670 - 37,363,356 (-)NCBICHM1_1
T2T-CHM13v2.02237,450,704 - 37,467,442 (-)NCBIT2T-CHM13v2.0
Cimip4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,262,600 - 78,280,112 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,262,600 - 78,280,112 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381578,378,400 - 78,395,912 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,378,400 - 78,395,912 (-)Ensemblmm10GRCm38
MGSCv371578,208,830 - 78,226,342 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361578,205,655 - 78,223,157 (-)NCBIMGSCv36mm8
Celera1579,841,109 - 79,858,612 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.45NCBI
Cimip4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,508,325 - 23,525,720 (-)Ensembl
ChiLan1.0NW_00495541323,508,531 - 23,525,964 (-)NCBIChiLan1.0ChiLan1.0
CIMIP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,845,074 - 46,864,787 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,536,521 - 49,553,369 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,905,387 - 17,922,201 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,740,255 - 35,758,056 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,740,255 - 35,758,056 (-)EnsemblpanPan2panpan1.1
CIMIP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,495,451 - 27,510,203 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,494,157 - 27,510,199 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1027,444,054 - 27,464,694 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01028,281,562 - 28,302,285 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,281,567 - 28,303,956 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,003,123 - 28,023,733 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,311,699 - 28,332,334 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,489,679 - 28,510,930 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cimip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,884,063 - 10,893,924 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364923,887,052 - 3,904,337 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIMIP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,764,497 - 10,776,172 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1510,768,056 - 10,776,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,363,878 - 8,375,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CIMIP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,693,013 - 19,714,116 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,693,067 - 19,705,317 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045106,149,322 - 106,169,643 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cimip4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,777,119 - 10,799,420 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475210,774,915 - 10,797,904 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Cimip4
62 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
BF394079  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27109,946,410 - 109,946,519 (+)MAPPERmRatBN7.2
Rnor_6.07119,614,671 - 119,614,779NCBIRnor6.0
Rnor_5.07119,605,346 - 119,605,454UniSTSRnor5.0
RGSC_v3.47116,347,331 - 116,347,439UniSTSRGSC3.4
Celera7106,284,443 - 106,284,551UniSTS
RH 3.4 Map7817.4UniSTS
AW529441  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr87111,808,725 - 111,809,078 (+)Marker Load Pipeline
mRatBN7.27109,928,228 - 109,928,581 (+)MAPPERmRatBN7.2
Rnor_6.07119,598,118 - 119,598,470NCBIRnor6.0
Rnor_5.07119,588,409 - 119,588,761UniSTSRnor5.0
RGSC_v3.47116,299,800 - 116,300,152UniSTSRGSC3.4
Celera7106,266,662 - 106,267,014UniSTS
RH 3.4 Map7814.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
3 1 18 1 19 7 7 13 9 4 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000084127   ⟹   ENSRNOP00000071794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,928,173 - 109,936,793 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105257   ⟹   ENSRNOP00000077888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,928,173 - 109,940,209 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113683   ⟹   ENSRNOP00000085941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7111,808,670 - 111,825,412 (-)Ensembl
mRatBN7.2 Ensembl7109,928,173 - 109,944,915 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118890   ⟹   ENSRNOP00000077875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,928,173 - 109,947,072 (-)Ensembl
RefSeq Acc Id: NM_001044289   ⟹   NP_001037754
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,808,669 - 111,825,412 (-)NCBI
mRatBN7.27109,928,172 - 109,944,915 (-)NCBI
Rnor_6.07119,598,061 - 119,613,175 (-)NCBI
Rnor_5.07119,588,352 - 119,603,850 (-)NCBI
Celera7106,266,605 - 106,282,947 (-)RGD
Sequence:
RefSeq Acc Id: XM_039079912   ⟹   XP_038935840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,808,669 - 111,825,522 (-)NCBI
mRatBN7.27109,928,165 - 109,944,994 (-)NCBI
RefSeq Acc Id: XM_039079913   ⟹   XP_038935841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,808,669 - 111,818,535 (-)NCBI
mRatBN7.27109,928,165 - 109,938,032 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001037754 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935840 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935841 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79191 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085941
  ENSRNOP00000085941.1
RefSeq Acc Id: NP_001037754   ⟸   NM_001044289
- UniProtKB: Q6AY51 (UniProtKB/TrEMBL),   A0A0G2K1D1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038935840   ⟸   XM_039079912
- Peptide Label: isoform X1
- UniProtKB: Q6AY51 (UniProtKB/TrEMBL),   A0A0G2K1D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935841   ⟸   XM_039079913
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K1D1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000071794   ⟸   ENSRNOT00000084127
Ensembl Acc Id: ENSRNOP00000077888   ⟸   ENSRNOT00000105257
Ensembl Acc Id: ENSRNOP00000085941   ⟸   ENSRNOT00000113683
Ensembl Acc Id: ENSRNOP00000077875   ⟸   ENSRNOT00000118890

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K1D1-F1-model_v2 AlphaFold A0A0G2K1D1 1-247 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592508 AgrOrtholog
BioCyc Gene G2FUF-32834 BioCyc
Ensembl Genes ENSRNOG00000063601 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000113683 ENTREZGENE
  ENSRNOT00000113683.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7131327 IMAGE-MGC_LOAD
InterPro TEX33_prot UniProtKB/TrEMBL
KEGG Report rno:686841 UniProtKB/TrEMBL
MGC_CLONE MGC:94240 IMAGE-MGC_LOAD
NCBI Gene 686841 ENTREZGENE
PANTHER PTHR31702 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 33 UniProtKB/TrEMBL
Pfam TEX33 UniProtKB/TrEMBL
PhenoGen Cimip4 PhenoGen
RatGTEx ENSRNOG00000063601 RatGTEx
UniProt A0A0G2K1D1 ENTREZGENE
  Q6AY51 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-05 Cimip4  ciliary microtubule inner protein 4  Tex33  testis expressed 33  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-16 Tex33  testis expressed 33  LOC686841  similar to Protein EAN57  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC686841  similar to Protein EAN57      Symbol and Name status set to provisional 70820 PROVISIONAL