Rufy2 (RUN and FYVE domain containing 2) - Rat Genome Database

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Pathways
Gene: Rufy2 (RUN and FYVE domain containing 2) Rattus norvegicus
Analyze
Symbol: Rufy2
Name: RUN and FYVE domain containing 2
RGD ID: 1592188
Description: Predicted to enable SH3 domain binding activity. Predicted to be active in cytoplasm. Orthologous to human RUFY2 (RUN and FYVE domain containing 2); INTERACTS WITH acrylamide; bisphenol A; bisphenol AF.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC100910755; LOC361837; LOC690777; RUN and FYVE domain-containing 2; RUN and FYVE domain-containing protein 2; RUN and FYVE domain-containing protein 2-like; similar to RUN and FYVE domain-containing 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82025,566,950 - 25,657,937 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2025,621,646 - 25,656,844 (-)EnsemblGRCr8
mRatBN7.22025,626,958 - 25,658,157 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,621,999 - 25,658,186 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2026,322,309 - 26,351,609 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02025,675,339 - 25,704,636 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02026,261,363 - 26,290,687 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,219,729 - 27,250,006 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,220,707 - 27,247,309 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl2027,181,195 - 27,208,041 (-)Ensemblrn6Rnor6.0
Rnor_5.02029,060,267 - 29,090,619 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42025,320,749 - 25,350,160 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2026,924,589 - 26,951,233 (-)NCBICelera
RGSC_v3.12025,333,674 - 25,363,932 (+)NCBI
Cytogenetic Map20q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11877430  


Genomics

Comparative Map Data
Rufy2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82025,566,950 - 25,657,937 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2025,621,646 - 25,656,844 (-)EnsemblGRCr8
mRatBN7.22025,626,958 - 25,658,157 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,621,999 - 25,658,186 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2026,322,309 - 26,351,609 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02025,675,339 - 25,704,636 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02026,261,363 - 26,290,687 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,219,729 - 27,250,006 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,220,707 - 27,247,309 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl2027,181,195 - 27,208,041 (-)Ensemblrn6Rnor6.0
Rnor_5.02029,060,267 - 29,090,619 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42025,320,749 - 25,350,160 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2026,924,589 - 26,951,233 (-)NCBICelera
RGSC_v3.12025,333,674 - 25,363,932 (+)NCBI
Cytogenetic Map20q11NCBI
RUFY2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381068,341,112 - 68,407,277 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1068,341,107 - 68,407,313 (-)Ensemblhg38GRCh38
GRCh371070,100,869 - 70,167,034 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361069,773,281 - 69,837,057 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341069,770,869 - 69,834,608NCBI
Celera1063,377,878 - 63,442,409 (-)NCBICelera
Cytogenetic Map10q21.3NCBI
HuRef1064,101,126 - 64,167,005 (-)NCBIHuRef
CHM1_11070,382,655 - 70,448,824 (-)NCBICHM1_1
T2T-CHM13v2.01069,210,323 - 69,276,503 (-)NCBIT2T-CHM13v2.0
Rufy2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,815,947 - 62,852,988 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,816,002 - 62,852,989 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381062,980,174 - 63,017,209 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,980,223 - 63,017,210 (+)Ensemblmm10GRCm38
MGSCv371062,442,971 - 62,481,490 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361062,375,680 - 62,407,118 (+)NCBIMGSCv36mm8
Celera1064,081,547 - 64,120,066 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.51NCBI
Rufy2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542520,632,271 - 20,658,610 (-)Ensembl
ChiLan1.0NW_00495542520,632,271 - 20,658,582 (-)NCBIChiLan1.0ChiLan1.0
RUFY2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2880,506,744 - 80,570,684 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11080,512,063 - 80,576,003 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01064,827,663 - 64,891,632 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11067,137,480 - 67,200,421 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1067,137,592 - 67,200,421 (-)EnsemblpanPan2panpan1.1
RUFY2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1419,570,153 - 19,622,037 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl419,572,121 - 19,621,905 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha419,702,525 - 19,754,450 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0419,840,339 - 19,892,528 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl419,840,339 - 19,892,499 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1419,722,465 - 19,774,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0419,944,610 - 19,996,602 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0420,287,888 - 20,339,883 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rufy2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721361,398,165 - 61,441,108 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365219,891,657 - 9,933,731 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365219,891,697 - 9,934,407 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RUFY2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1471,498,651 - 71,547,311 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11471,497,232 - 71,547,737 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21477,559,558 - 77,606,344 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RUFY2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1962,993,151 - 63,050,274 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl962,993,856 - 63,049,981 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604823,755,974 - 23,817,396 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rufy2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247542,709,727 - 2,743,436 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rufy2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11823,675,930 - 23,710,752 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rufy2
290 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:47
Interacting mature miRNAs:51
Transcripts:ENSRNOT00000037409
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
19 2 31 118 68 60 36 79 36 12 256 145 11 93 56 70 24 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001168586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000037409   ⟹   ENSRNOP00000035701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2025,626,545 - 25,656,844 (-)Ensembl
mRatBN7.2 Ensembl2025,628,826 - 25,655,501 (-)Ensembl
Rnor_6.0 Ensembl2027,220,707 - 27,247,309 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084720   ⟹   ENSRNOP00000073001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2025,622,544 - 25,656,774 (-)Ensembl
mRatBN7.2 Ensembl2025,623,841 - 25,658,164 (-)Ensembl
Rnor_6.0 Ensembl2027,181,195 - 27,208,041 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111186   ⟹   ENSRNOP00000089257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2025,635,666 - 25,656,844 (-)Ensembl
mRatBN7.2 Ensembl2025,621,999 - 25,658,186 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112698   ⟹   ENSRNOP00000081901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2025,635,666 - 25,656,844 (-)Ensembl
mRatBN7.2 Ensembl2025,621,999 - 25,658,168 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137024   ⟹   ENSRNOP00000110785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2025,621,646 - 25,656,844 (-)Ensembl
RefSeq Acc Id: NM_001168586   ⟹   NP_001162058
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,627,518 - 25,656,844 (-)NCBI
mRatBN7.22025,628,826 - 25,658,157 (-)NCBI
Rnor_6.02027,220,679 - 27,249,976 (-)NCBI
Rnor_5.02029,060,267 - 29,090,619 (-)NCBI
RGSC_v3.42025,320,749 - 25,350,160 (+)RGD
Celera2026,924,589 - 26,951,233 (-)RGD
Sequence:
RefSeq Acc Id: XM_039099096   ⟹   XP_038955024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,566,950 - 25,657,920 (-)NCBI
mRatBN7.22025,626,958 - 25,658,035 (-)NCBI
RefSeq Acc Id: XM_039099101   ⟹   XP_038955029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,634,615 - 25,657,926 (-)NCBI
mRatBN7.22025,636,574 - 25,658,076 (-)NCBI
RefSeq Acc Id: XM_039099102   ⟹   XP_038955030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,634,615 - 25,657,925 (-)NCBI
mRatBN7.22025,635,808 - 25,658,076 (-)NCBI
RefSeq Acc Id: XM_063279536   ⟹   XP_063135606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,566,950 - 25,657,920 (-)NCBI
RefSeq Acc Id: XM_063279537   ⟹   XP_063135607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,566,950 - 25,657,920 (-)NCBI
RefSeq Acc Id: XM_063279538   ⟹   XP_063135608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,566,950 - 25,657,920 (-)NCBI
RefSeq Acc Id: XM_063279539   ⟹   XP_063135609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,627,913 - 25,657,927 (-)NCBI
RefSeq Acc Id: XM_063279540   ⟹   XP_063135610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,566,950 - 25,656,913 (-)NCBI
RefSeq Acc Id: XM_063279541   ⟹   XP_063135611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,627,913 - 25,657,928 (-)NCBI
RefSeq Acc Id: XM_063279542   ⟹   XP_063135612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,627,913 - 25,657,929 (-)NCBI
RefSeq Acc Id: XM_063279543   ⟹   XP_063135613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,632,741 - 25,657,927 (-)NCBI
RefSeq Acc Id: XM_063279544   ⟹   XP_063135614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,634,615 - 25,657,937 (-)NCBI
RefSeq Acc Id: XM_063279545   ⟹   XP_063135615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,634,615 - 25,656,913 (-)NCBI
RefSeq Acc Id: XM_063279546   ⟹   XP_063135616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,634,615 - 25,656,913 (-)NCBI
RefSeq Acc Id: XM_063279547   ⟹   XP_063135617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,634,615 - 25,656,913 (-)NCBI
RefSeq Acc Id: XM_063279548   ⟹   XP_063135618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,634,615 - 25,656,913 (-)NCBI
RefSeq Acc Id: NP_001162058   ⟸   NM_001168586
- UniProtKB: A6JL02 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000035701   ⟸   ENSRNOT00000037409
RefSeq Acc Id: XP_038955024   ⟸   XM_039099096
- Peptide Label: isoform X1
- UniProtKB: A6JL02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955030   ⟸   XM_039099102
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038955029   ⟸   XM_039099101
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000073001   ⟸   ENSRNOT00000084720
Ensembl Acc Id: ENSRNOP00000081901   ⟸   ENSRNOT00000112698
Ensembl Acc Id: ENSRNOP00000089257   ⟸   ENSRNOT00000111186
RefSeq Acc Id: XP_063135608   ⟸   XM_063279538
- Peptide Label: isoform X1
- UniProtKB: A6JL02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135606   ⟸   XM_063279536
- Peptide Label: isoform X1
- UniProtKB: A6JL02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135607   ⟸   XM_063279537
- Peptide Label: isoform X1
- UniProtKB: A6JL02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135610   ⟸   XM_063279540
- Peptide Label: isoform X3
- UniProtKB: A6JL02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135612   ⟸   XM_063279542
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063135611   ⟸   XM_063279541
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063135609   ⟸   XM_063279539
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063135613   ⟸   XM_063279543
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063135614   ⟸   XM_063279544
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063135615   ⟸   XM_063279545
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GHY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135617   ⟸   XM_063279547
- Peptide Label: isoform X11
- UniProtKB: A0A8I6GHY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135618   ⟸   XM_063279548
- Peptide Label: isoform X12
- UniProtKB: A0A8I6GHY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135616   ⟸   XM_063279546
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZTG8 (UniProtKB/TrEMBL),   A0A8I6GHY0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110785   ⟸   ENSRNOT00000137024
Protein Domains
FYVE-type   RUN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSW9-F1-model_v2 AlphaFold D3ZSW9 1-605 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592188 AgrOrtholog
BioCyc Gene G2FUF-3809 BioCyc
Ensembl Genes ENSRNOG00000000390 Ensembl
  ENSRNOG00000059663 Ensembl
  ENSRNOG00000065563 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037409 ENTREZGENE
  ENSRNOT00000037409.8 UniProtKB/TrEMBL
  ENSRNOT00000084720 ENTREZGENE
  ENSRNOT00000084720.3 UniProtKB/TrEMBL
  ENSRNOT00000111186.2 UniProtKB/TrEMBL
  ENSRNOT00000112698 ENTREZGENE
  ENSRNOT00000112698.2 UniProtKB/TrEMBL
  ENSRNOT00000137024.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  1.20.58.900 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro RUFY1-3 UniProtKB/TrEMBL
  Run UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/TrEMBL
  RUN_RUFY2 UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene 690777 ENTREZGENE
PANTHER RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN UniProtKB/TrEMBL
Pfam FYVE UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
PhenoGen Rufy2 PhenoGen
PROSITE RUN UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000390 RatGTEx
  ENSRNOG00000059663 RatGTEx
  ENSRNOG00000065563 RatGTEx
SMART FYVE UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
Superfamily-SCOP SSF140741 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A0G2K4D6_RAT UniProtKB/TrEMBL
  A0A8I5ZTG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GHY0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M6B9_RAT UniProtKB/TrEMBL
  A6JL02 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSW9_RAT UniProtKB/TrEMBL
UniProt Secondary D4A6B6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Rufy2  RUN and FYVE domain containing 2  LOC100910755  RUN and FYVE domain-containing protein 2-like  Data merged from RGD:6497270 737654 PROVISIONAL
2013-05-24 Rufy2  RUN and FYVE domain containing 2  LOC687911  similar to RUN and FYVE domain-containing 2  Data merged from RGD:1594937 1643240 APPROVED
2012-07-05 LOC100910755  RUN and FYVE domain-containing protein 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-21 LOC690777  similar to RUN and FYVE domain-containing 2  Rufy2  RUN and FYVE domain-containing 2  Data merged from RGD:1304564 737654 APPROVED
2010-05-21 Rufy2  RUN and FYVE domain containing 2  LOC690777  similar to RUN and FYVE domain-containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rufy2  RUN and FYVE domain-containing 2   Rufy2_predicted  RUN and FYVE domain-containing 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC690777  similar to RUN and FYVE domain-containing 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC687911  similar to RUN and FYVE domain-containing 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Rufy2_predicted  RUN and FYVE domain-containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED