C4h12orf71 (similar to human chromosome 12 open reading frame 71) - Rat Genome Database

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Gene: C4h12orf71 (similar to human chromosome 12 open reading frame 71) Rattus norvegicus
Analyze
Symbol: C4h12orf71
Name: similar to human chromosome 12 open reading frame 71
RGD ID: 1592184
Description: Orthologous to human C12orf71 (chromosome 12 open reading frame 71); INTERACTS WITH benzo[a]pyrene (ortholog); fulvestrant (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC690783; hypothetical protein LOC690784; LOC690784; uncharacterized protein C12orf71 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,599,839 - 181,602,709 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4181,599,558 - 181,602,919 (-)EnsemblGRCr8
mRatBN7.24179,869,177 - 179,872,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,868,931 - 179,872,205 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4186,153,451 - 186,156,287 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04181,937,947 - 181,940,783 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04180,558,395 - 180,561,231 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04181,344,632 - 181,351,800 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,346,002 - 181,348,799 (-)Ensemblrn6Rnor6.0
Rnor_5.04245,494,840 - 245,499,194 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44184,553,392 - 184,556,190 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4168,362,511 - 168,365,309 (-)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
C4h12orf71
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,599,839 - 181,602,709 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4181,599,558 - 181,602,919 (-)EnsemblGRCr8
mRatBN7.24179,869,177 - 179,872,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,868,931 - 179,872,205 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4186,153,451 - 186,156,287 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04181,937,947 - 181,940,783 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04180,558,395 - 180,561,231 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04181,344,632 - 181,351,800 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,346,002 - 181,348,799 (-)Ensemblrn6Rnor6.0
Rnor_5.04245,494,840 - 245,499,194 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44184,553,392 - 184,556,190 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4168,362,511 - 168,365,309 (-)NCBICelera
Cytogenetic Map4q44NCBI
C12orf71
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381227,081,057 - 27,084,127 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1227,081,057 - 27,082,578 (-)Ensemblhg38GRCh38
GRCh371227,233,990 - 27,237,060 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,125,257 - 27,126,722 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1232,380,143 - 32,381,608 (-)NCBICelera
Cytogenetic Map12p11.23NCBI
HuRef1227,003,756 - 27,005,221 (-)NCBIHuRef
CHM1_11227,198,995 - 27,200,460 (-)NCBICHM1_1
T2T-CHM13v2.01226,953,119 - 26,956,189 (-)NCBIT2T-CHM13v2.0
1700034J05Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396146,852,799 - 146,855,937 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6146,851,827 - 146,855,920 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386146,951,301 - 146,954,439 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6146,950,329 - 146,954,422 (-)Ensemblmm10GRCm38
MGSCv376146,899,823 - 146,902,943 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366146,908,458 - 146,911,584 (-)NCBIMGSCv36mm8
MGSCv366147,674,251 - 147,675,728 (-)NCBIMGSCv36mm8
Celera6149,983,456 - 149,986,577 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.7NCBI
LOC102026077
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554574,101,646 - 4,104,511 (-)NCBIChiLan1.0ChiLan1.0
LOC100985183
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21069,730,620 - 69,737,432 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11269,727,018 - 69,733,820 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01259,228,775 - 59,232,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11261,844,221 - 61,847,290 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1261,844,221 - 61,847,289 (+)EnsemblpanPan2panpan1.1
C27H12orf71
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12720,123,722 - 20,126,260 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2720,124,468 - 20,126,257 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2726,274,039 - 26,276,590 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02720,317,618 - 20,320,164 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2720,317,493 - 20,320,161 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12720,124,171 - 20,126,725 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02720,151,974 - 20,154,540 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02726,430,998 - 26,433,548 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101974099
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494582,081,135 - 82,083,756 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365485,057 - 6,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C5H12orf71
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1546,146,572 - 46,148,690 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2549,708,395 - 49,711,760 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C11H12orf71
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11126,829,579 - 26,833,447 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1126,829,699 - 26,831,022 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
ChlSab1.1 Ensembl1126,829,699 - 26,831,022 (-)NCBIChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366697416,880 - 18,334 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C6H12orf71
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v164,619,441 - 4,622,267 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in C4h12orf71
44 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:287
Count of miRNA genes:189
Interacting mature miRNAs:215
Transcripts:ENSRNOT00000033743
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4176806581181925369Rat

Markers in Region
D4Got141  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24179,871,788 - 179,871,900 (+)MAPPERmRatBN7.2
Rnor_6.04181,348,613 - 181,348,724NCBIRnor6.0
Rnor_5.04245,498,821 - 245,498,932UniSTSRnor5.0
RGSC_v3.44184,556,003 - 184,556,115RGDRGSC3.4
RGSC_v3.44184,556,004 - 184,556,115UniSTSRGSC3.4
Celera4168,365,123 - 168,365,234UniSTS
RGSC_v3.14184,801,128 - 184,801,239RGD
RH 3.4 Map41083.9RGD
RH 3.4 Map41083.9UniSTS
Cytogenetic Map4q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
3 9 18 47 34 39 15 36 15 1 122 65 45 31 38 24 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000033743   ⟹   ENSRNOP00000031574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4181,599,558 - 181,602,919 (-)Ensembl
mRatBN7.2 Ensembl4179,868,931 - 179,872,205 (-)Ensembl
Rnor_6.0 Ensembl4181,346,002 - 181,348,799 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082879   ⟹   ENSRNOP00000074917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4181,346,520 - 181,348,038 (-)Ensembl
RefSeq Acc Id: NM_001044299   ⟹   NP_001037764
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,599,841 - 181,602,639 (-)NCBI
mRatBN7.24179,869,177 - 179,871,975 (-)NCBI
Rnor_6.04181,346,001 - 181,348,799 (-)NCBI
Rnor_5.04245,494,840 - 245,499,194 (-)NCBI
RGSC_v3.44184,553,392 - 184,556,190 (-)RGD
Celera4168,362,511 - 168,365,309 (-)RGD
Sequence:
RefSeq Acc Id: XM_008763426   ⟹   XP_008761648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,599,839 - 181,602,709 (-)NCBI
mRatBN7.24179,869,883 - 179,872,022 (-)NCBI
Rnor_6.04181,344,632 - 181,349,265 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108391   ⟹   XP_038964319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,599,839 - 181,602,709 (-)NCBI
mRatBN7.24179,869,883 - 179,872,022 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001037764 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761648 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964319 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH82012 (Get FASTA)   NCBI Sequence Viewer  
  EDM01403 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000031574
GenBank Protein Q66H53 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001037764   ⟸   NM_001044299
- UniProtKB: Q66H53 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008761648   ⟸   XM_008763426
- Peptide Label: isoform X1
- UniProtKB: A0A8L2UKV6 (UniProtKB/TrEMBL),   A6IN36 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074917   ⟸   ENSRNOT00000082879
Ensembl Acc Id: ENSRNOP00000031574   ⟸   ENSRNOT00000033743
RefSeq Acc Id: XP_038964319   ⟸   XM_039108391
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66H53-F1-model_v2 AlphaFold Q66H53 1-300 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693508
Promoter ID:EPDNEW_R4032
Type:initiation region
Name:LOC690784_1
Description:hypothetical protein LOC690783
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04181,348,840 - 181,348,900EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592184 AgrOrtholog
BioCyc Gene G2FUF-42421 BioCyc
Ensembl Genes ENSRNOG00000026864 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000033743 ENTREZGENE
IMAGE_CLONE IMAGE:7132059 IMAGE-MGC_LOAD
InterPro DUF4640 UniProtKB/Swiss-Prot
KEGG Report rno:690784 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94289 IMAGE-MGC_LOAD
NCBI Gene 690784 ENTREZGENE
PANTHER CHROMOSOME 12 OPEN READING FRAME 71 UniProtKB/Swiss-Prot
  PTHR36462 UniProtKB/Swiss-Prot
Pfam DUF4640 UniProtKB/Swiss-Prot
PhenoGen C4h12orf71 PhenoGen
RatGTEx ENSRNOG00000026864 RatGTEx
UniProt A0A8L2UKV6 ENTREZGENE, UniProtKB/TrEMBL
  A6IN36 ENTREZGENE, UniProtKB/TrEMBL
  CL071_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-19 C4h12orf71  similar to human chromosome 12 open reading frame 71  LOC690784  hypothetical protein LOC690784  Name and Symbol changed 629549 APPROVED
2020-02-11 LOC690784  hypothetical protein LOC690784  LOC690784  hypothetical protein LOC690783  Name changed 629549 APPROVED
2008-01-09 LOC690784  hypothetical protein LOC690783  LOC686529  hypothetical protein LOC686529  Data merged from RGD:1596369 1643240 APPROVED
2006-11-20 LOC690784  hypothetical protein LOC690783      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686529  hypothetical protein LOC686529      Symbol and Name status set to provisional 70820 PROVISIONAL